Terminally modified RNA
The invention relates to compositions and methods for the manufacture and optimization of modified mRNA molecules via optimization of their terminal architecture.
1. A method for reducing expression of a therapeutic polypeptide in human cells or human tissue, comprising contacting the cells or tissue with a messenger RNA (mRNA) comprising:
a. a 5′ untranslated region (UTR);
b. a region of linked nucleosides encoding the therapeutic polypeptide;
c. a 3′ UTR comprising at least one microRNA binding site which binds to at least one microRNA molecule differentially expressed in the cells or tissue; and
d. a 3′ tailing region of linked nucleosides
wherein each uridine in the mRNA is a modified uridine nucleoside, and
wherein expression of the therapeutic polypeptide is reduced in the cells or tissue expressing the microRNA molecule.
2. The method of claim 1 , wherein the modified uridine nucleoside is a 1-methyl-pseudouridine.
3. The method of claim 1 , wherein each cytidine in the mRNA is a 5-methyl cytidine.
4. The method of claim 1 , wherein the microRNA binding site comprises a sequence selected from the group consisting of: SEQ ID Nos: 1192-2212 and 3234-4254.
5. The method of claim 1 , wherein the microRNA binding site comprises a sequence selected from the group consisting of: SEQ ID Nos: 1250, 1255, 1308, 1311, 1374, 1375, 1404 and 1405.
6. The method of claim 1 , wherein the contacting occurs in vivo.
7. The method of claim 1 , wherein the UTR 3′ UTR comprises 1, 2, 3, 4 or 5 microRNA binding sites.
8. A method for targeting expression of a therapeutic polypeptide in cells or tissue, comprising administering a lipid nanoparticle (LNP) encapsulated mRNA to a human subject, wherein the mRNA comprises:
a. a 5′ UTR;
b. a region of linked nucleosides encoding the therapeutic polypeptide;
c. a 3′ UTR comprising at least one microRNA binding site which binds to at least one microRNA molecule differentially expressed in the cells or tissue; and
d. a 3′ tailing region of linked nucleosides
wherein each uridine in the mRNA is a modified uridine nucleoside, and
wherein expression of the therapeutic polypeptide is reduced in the cells or tissue expressing the microRNA molecule.
9. The method of claim 8 , wherein the modified uridine nucleoside is a 1-methyl-pseudouridine.
10. The method of claim 8 , wherein each cytidine in the mRNA is a 5-methyl cytidine.
11. The method of claim 8 , wherein the microRNA binding site comprises a sequence selected from the group consisting of: SEQ ID Nos: 1192-2212 and 3234-4254.
12. The method of claim 8 , wherein the microRNA binding site comprises a sequence selected from the group consisting of: SEQ ID Nos: 1250, 1255, 1308, 1311, 1374, 1375, 1404 and 1405.
13. The method of claim 8 , wherein the UTR 3′ UTR comprises 1, 2, 3, 4 or 5 microRNA binding sites.
14. The method of claim 8 , wherein the LNP comprises a cationic or ionizable lipid.
15. The method of claim 14 , wherein the LNP comprises a PEG lipid.
16. The method of claim 15 , wherein the LNP comprises 1-5% PEG-lipid.