Apparatus and method to quantify maize seed phenotypes
A maize ear scanning device and computer vision kernel counting pipeline is used to analyze a maize ear. The process of analyzing the maize ear comprises: placing the ear on a rotating motor, fastened at the top with a metal pin on the sliding portion of the scanner; starting the motor's rotation; capturing an image of rotating ear with camera; converting rotating ear video into flat image by extracting individual frames, cropping to center horizontal pixel row, and concatenating all pixel rows; and running computer vision pipeline on image to identify seed locations.
1. An apparatus for identifying characteristics of objects on a cylindrical body, the apparatus comprising:
a frame;
a first rail attached to the frame;
a second rail attached to the frame, wherein the second rail is parallel to the first rail, wherein the second rail is across the first rail;
a rack slidable along the first rail and the second rail, wherein the rack includes a first structure slidable along the first rail, wherein the rack includes a second structure slidable along the second rail, and wherein the rack comprises a third structure which is orthogonally connected to the first structure and the second structure;
a pedestal with a housing, wherein the pedestal is coupled to a base, which is attached to the frame;
a shaft to rotate the cylindrical body, wherein the shaft has a first end which is coupled to the third structure of the rack, wherein the shaft has a second end which is coupled to the pedestal such that the cylindrical body is to rotate between the third structure of the rack and the pedestal, and wherein the shaft moves away from the pedestal as the rack slides on the first rail and the second rail away from the pedestal;
a camera to capture images of the cylindrical body as it rotates; and
a processor communicatively coupled to the camera, wherein the processor is to:
convert the images into a two-dimensional image of the cylindrical body in its entirety; and
identify the objects on the cylindrical body from the two-dimensional image.
2. The apparatus of claim 1 , wherein the processor is to apply a computer vision pipeline to count the objects.
3. The apparatus of claim 1 , wherein the cylindrical body is a maize ear, and wherein the objects are seeds on the maize ear.
4. The apparatus of claim 3 , wherein the processor is to identify the objects including color of the seeds and position of the seeds in the maize ear.
5. The apparatus of claim 1 wherein the processor is to convert the images into the two-dimensional image by an operation which comprises:
extract individual frames from the images;
crop the individual frames to mine a picture of a row of objects on the cylindrical body for each individual frame; and
concatenate the picture, which is mined, of the row of objects to generate the two-dimensional image of the cylindrical body in its entirety.
6. The apparatus of claim 1 comprises a motor to rotate the shaft, wherein the motor is positioned in the pedestal.
7. The apparatus of claim 1 , wherein the processor is to:
control a speed of rotation of the cylindrical body; and
adjust a frame rate to capture the images of the cylindrical body according to the speed of rotation.
8. The apparatus of claim 1 , wherein the processor is in a cloud computing environment.
9. The apparatus of claim 5 , wherein the processor is to concatenate the picture of the row of objects sequentially.
10. The apparatus of claim 6 , wherein the motor is to rotate the shaft at a constant speed.
11. The apparatus of claim 1 , wherein the shaft is coupled to pillow block bearing.
12. The apparatus of claim 1 , wherein the shaft includes a pin to penetrate the cylindrical body, wherein the pin is mounted on a pillow block bearing.
13. The apparatus of claim 1 , wherein the shaft is long enough to couple two or more cylindrical body through the shaft.
14. The apparatus of claim 1 , wherein the camera is coupled to an orange filter to partially filter out non-green fluorescent protein wavelength.
15. The apparatus of claim 1 , wherein the cylindrical body is illuminated with a blue light.