IP Library Granted Patent US 12,060,366
Granted Patent B2
US 12,060,366 · App. 17/255,772 · Granted Aug 13, 2024

Bispecific degraders

Inventors: Nathanael Gray (Boston, MA); Tinghu Zhang (Brookline, MA); Eric Fischer (Chestnut Hill, MA); Alyssa Verano (Allston, MA); Zhixiang He (Brookline, MA); Guangyan Du (Jamaica Plain, MA); Katherine Donovan (Boston, MA); Radoslaw Nowak (Boston, MA); Jing Ting Christine Yuan (Brookline, MA)
Assignee: Dana-Farber Cancer Institute, Inc.
C07D495/14A61K47/545A61K47/55A61P35/00
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Quick Facts
Patent No.
US 12,060,366
App. No.
17/255,772
Granted
Aug 13, 2024
Kind
B2
Abstract

Disclosed are degraders, pharmaceutical compositions containing them, and methods of making and using the degraders to treat diseases and disorders characterized by aberrant protein activity that can be targeted by cereblon.

Claims (37)

1. A compound having a structure represented by formula (I):

wherein A represents A 1 :

wherein X and X 1 independently represent C or N, provided that one of X and X 1 represents N; wherein R 1 is absent if X 1 represents N, and if X 1 represents C, R 1 represents H, or wherein R 1 together with R 2 and the other atoms to which they are bound form an optionally substituted 5- or 6-membered carbocyclic group or an optionally substituted 5- or 6-membered heterocyclic group;

R 2 represents H, halo, optionally substituted C1-C4 alkoxy, optionally substituted aryl, optionally substituted heteroaryl, or NR 6 R 7 , wherein each of R 6 and R 7 independently represents H or a substituent, or R 2 together with R 1 and the other atoms to which they are bound form an optionally substituted 5- or 6-membered carbocyclic group or an optionally substituted 5- or 6-membered heterocyclic group;

if X represents N, R 3 is absent, and if X represents C, R 3 independently represents H, halo, amine, optionally substituted amine, optionally substituted C1-C4 alkoxy, NR 6 R 7 , or , wherein L represents a linker,

wherein the linker is an alkylene chain or a polyethylene glycol chain, either of which may be interrupted by, and/or terminate (at either or both termini) in at least one of —O—, —S—, —N(R′)—, —C≡C—, —C(O)—, —C(O)O—, —OC(O)—, —OC(O)O—, —C(NOR′)—, —C(O)N(R′)—, —C(O)N(R′)C(O)—, —C(O)N(R′)C(O)N(R′)—, —N(R′)C(O)—, —N(R′)C(O)N(R′)—, —N(R′)C(O)O—, —OC(O)N(R′)—, —C(NR′)—, —N(R′)C(NR′)—, —C(NR′)N(R′)—, —N(R′)C(NR′)N(R′)—, —OB(Me)O—, —S(O) 2 —, —OS(O)—, —S(O)O—, —S(O)—, —OS(O) 2 —, —S(O) 2 O—, —N(R′)S(O) 2 —, —S(O) 2 N(R′)—, —N(R′)S(O)—, —S(O)N(R′)—, —N(R′)S(O) 2 N(R′)—, —N(R′)S(O)N(R′)—, C3-C12 carbocyclene, 3- to 12-membered heterocyclene, 5- to 12-membered heteroarylene or any combination thereof, wherein R′ is H or C1-C6 alkyl, wherein the interrupting and the one or both terminating groups may be the same or different, and

TL represents

or

 or wherein R 2 and R 3 , or R 3 and R 4 , together with the atoms to which they are bound form an optionally substituted 5- or 6-membered carbocyclic group or an optionally substituted 5- or 6-membered heterocyclic group;

R 4 , and R 5 each independently represents H, halo, optionally substituted amine, optionally substituted C1-C4 alkoxy, optionally substituted aryl, optionally substituted heteroaryl, NR 6 R 7 , or , or wherein R 4 and R 5 , together with the atoms to which they are bound form an optionally substituted 5- or 6-membered carbocyclic group or an optionally substituted 5- or 6-membered heterocyclic group, provided that one of R 3 , R 4 and R 5 represents ;

or a pharmaceutically acceptable salt or stereoisomer thereof.

2. The compound of claim 1 , wherein R 3 represents , and the compound of formula (I) is represented by formula (Ia-1):

or a pharmaceutically acceptable salt or stereoisomer thereof.

3. The compound of claim 2 , wherein each of R 1 , R 2 , R 4 and R 5 represents H.

4. The compound of claim 1 , wherein R 4 is , and the compound of formula (I) is represented by formula (Ia-2):

or a pharmaceutically acceptable salt or stereoisomer thereof.

5. The compound of claim 4 , wherein each of R 1 , R 2 , R 3 and R 5 represents H.

6. The compound of claim 1 , wherein R 5 is , and the compound of formula (I) is represented by formula (Ia-3):

or a pharmaceutically acceptable salt or stereoisomer thereof.

7. The compound of claim 6 , wherein each of R 1 , R 2 , R 3 , and R 4 represents H.

8. The compound of claim 1 , wherein the targeting ligand has a structure of:

9. A compound which is

or a pharmaceutically acceptable salt or stereoisomer thereof.

10. A pharmaceutical composition, comprising a therapeutically effective amount of the compound of claim 1 or pharmaceutically acceptable salt or stereoisomer thereof, and a pharmaceutically acceptable carrier.

11. The pharmaceutical composition of claim 10 , which is in the form of a capsule.

12. A method of treating a cancer characterized by aberrant bromodomain-containing protein 2 (BRD2), BRD3, or BRD4 activity, comprising administering to a subject in need thereof a therapeutically effective amount of the compound of claim 1 or a pharmaceutically acceptable salt or stereoisomer thereof.

13. The method of claim 12 , wherein the cancer is multiple myeloma.

14. The compound of claim 1 , wherein the targeting ligand has a structure of:

15. The compound of claim 1 , wherein the targeting ligand has a structure of:

16. The compound of claim 9 , which is

 or a pharmaceutically acceptable salt or stereoisomer thereof.

17. The compound of claim 9 , which is

or a pharmaceutically acceptable salt or stereoisomer thereof.

18. The compound of claim 9 , which is

or a pharmaceutically acceptable salt or stereoisomer thereof.

19. A pharmaceutical composition, comprising a therapeutically effective amount of the compound of claim 9 pharmaceutically acceptable salt or stereoisomer thereof, and a pharmaceutically acceptable carrier.

20. A method of treating a cancer characterized by aberrant bromodomain-containing protein 2 (BRD2), BRD3, or BRD4 activity, comprising administering to a subject in need thereof a therapeutically effective amount of the compound of claim 9 or a pharmaceutically acceptable salt or stereoisomer thereof.

Assignments (2)
CONFIRMATORY LICENSE Recorded Oct 12, 2022
From: DANA-FARBER CANCER INST
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 061660/0977 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 25, 2022
From: GRAY, NATHANAEL; ZHANG, TINGHU; FISCHER, ERIC; VERANO, ALYSSA; HE, ZHIXIANG; DU, GUANGYAN; DONOVAN, KATHERINE; NOWAK, RADOSLAW
To: DANA-FARBER CANCER INSTITUTE, INC.
Reel/Frame 059398/0010 →
Continuity (2)
Provisional Application 62692197 · Jun 29, 2018
Related Publication 20210300941A1 · Sep 30, 2021