IP Library Granted Patent US 12,241,901
Granted Patent B2
US 12,241,901 · App. 17/260,957 · Granted Mar 4, 2025

Systems and methods for accurate optical pH sensing of biofilms

Inventors: Eric J. Seibel (Seattle, WA); Leonard Y. Nelson (Seattle, WA); Manuja Sharma (Seattle, WA); Jasmine Graham (Seattle, WA)
Assignee: The University of Washington
G01N33/84G01N21/64G01N33/52
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Quick Facts
Patent No.
US 12,241,901
App. No.
17/260,957
Granted
Mar 4, 2025
Kind
B2
Abstract

Systems and methods for accurate optical pH sensing of biofilms are disclosed. In one embodiment, a method of measuring an extracellular pH level using multiple wavelengths emitted by a fluorescent substance includes: exciting the fluorescent substance at an excitation wavelength; measuring a first fluorescence intensity at a first wavelength of a fluorescence emission; and measuring a second fluorescence intensity at a second wavelength of the fluorescence emission. The second wavelength is different from the first wavelength. The method also includes determining the extracellular pH level based on the first fluorescence intensity at the first wavelength and the second fluorescence intensity at the second wavelength.

Claims (61)

1. A method of measuring an extracellular pH level using multiple wavelengths emitted by a fluorescent substance, the method comprising:

exciting the fluorescent substance at an excitation wavelength;

measuring a first fluorescence intensity at a first wavelength of a fluorescence emission;

measuring a second fluorescence intensity at a second wavelength of the fluorescence emission, wherein the second wavelength is different from the first wavelength; and

determining the extracellular pH level based on the first fluorescence intensity at the first wavelength and the second fluorescence intensity at the second wavelength,

wherein the fluorescent substance is a fluorescein, and

wherein the method further comprises:

calibrating the fluorescence emission of an anion component and a dianion component of the fluorescein by:

subtracting ambient emission from the anion component and the dianion component; and

dividing the anion component and the dianion component by a peak spectral intensity to normalize the anion component and the dianion component.

2. A method of measuring an extracellular pH level using multiple wavelengths emitted by a fluorescent substance, the method comprising:

exciting the fluorescent substance at an excitation wavelength;

measuring a first fluorescence intensity at a first wavelength of a fluorescence emission;

measuring a second fluorescence intensity at a second wavelength of the fluorescence emission, wherein the second wavelength is different from the first wavelength; and

determining the extracellular pH level based on the first fluorescence intensity at the first wavelength and the second fluorescence intensity at the second wavelength,

wherein the fluorescent substance is a fluorescein;

wherein the extracellular pH level is determined based on:

Measured Spectrum= A 1*(Anion Spectrum)+ A 2*(Dianion Spectrum)

where:

A1 and A2 are calibration constants,

Dianion Spectrum is measured at the first wavelength, and

Anion Spectrum is measured at the second wavelength.

3. The method of claim 2 , wherein the excitation wavelength is within a range of 404-430 nm.

4. The method of claim 3 , wherein the excitation wavelength is 420 nm.

5. The method of claim 2 , wherein the first fluorescence wavelength is within a range of 515 to 525 nm.

6. The method of claim 2 , wherein the second fluorescence wavelength is within a range of 545 to 555 nm.

7. The method of claim 2 , wherein the extracellular pH level is determined over a layer of bacteria developed on a tooth plaque or over surfaces used in food processing.

8. The method of claim 2 , wherein the extracellular pH level is determined in drinking water, irrigation water, or water recycled from washing vegetables.

9. The method of claim 2 , wherein the extracellular pH level is determined over a surface of a plant.

10. The method of claim 9 , wherein the plant is a vegetable plant.

11. A system for measuring an extracellular pH level using multiple wavelengths emitted by a fluorescent substance, the system comprising:

a source of light configured to emit excitation light toward a target biological surface that includes the fluorescent substance;

a first wavelength filter configured to bandpass a fluorescence emission at a first wavelength;

a second wavelength filter configured to bandpass the fluorescence emission at a second wavelength, wherein the second wavelength is different from the first wavelength;

a first light sensor configured to receive the fluorescence emission at the first wavelength;

a second light sensor configured to receive the fluorescence emission at the second wavelength; and

a controller configured to receive first output data from the first light sensor and second output data from the second light sensor, wherein the controller is further configured to determine the extracellular pH level based on:

Measured Spectrum= A 1*(Anion Spectrum)+ A 2*(Dianion Spectrum)

where:

A1 and A2 are calibration constants,

Dianion Spectrum is measured at the first wavelength, and

Anion Spectrum is measured at the second wavelength.

12. The system of claim 11 , wherein the excitation wavelength is within a range of 404-430 nm.

13. The system of claim 12 , wherein the excitation wavelength is 420 nm.

14. The system of claim 11 , wherein the first fluorescence wavelength is within a range of 515 to 525 nm.

15. The system of claim 11 , wherein the second fluorescence wavelength is within a range of 545 to 555 nm.

16. The system of claim 11 , wherein the extracellular pH level is determined over a layer of bacteria developed on a tooth plaque, in drinking water, or over a surface of a plant.

17. A method of measuring an extracellular pH level using multiple wavelengths emitted by a single fluorescent substance, the method comprising:

exciting the fluorescent substance at an excitation wavelength;

measuring a first fluorescence intensity at a first wavelength of a fluorescence emission, wherein the first fluorescence intensity has a first correlation with the extracellular pH level;

measuring a second fluorescence intensity at a second wavelength of the fluorescence emission, wherein the second wavelength is different from the first wavelength,

wherein the second fluorescence intensity has a second correlation with the extracellular pH level, and

wherein one of the first correlation and the second correlation is positive and

another of the first correlation and the second correlation is negative; and

determining the extracellular pH level based on the first fluorescence intensity at the first wavelength and the second fluorescence intensity at the second wavelength.

18. The method of claim 17 , wherein the extracellular pH level is determined based on:

Measured Spectrum= A 1*(Anion Spectrum)+ A 2*(Dianion Spectrum)

where:

A1 and A2 are calibration constants,

Dianion Spectrum is measured at the first wavelength, and

Anion Spectrum is measured at the second wavelength.

Assignments (4)
CONFIRMATORY LICENSE Recorded Nov 22, 2023
From: UNIVERSITY OF WASHINGTON
To: NATIONAL SCIENCE FOUNDATION
Reel/Frame 065662/0982 →
CONFIRMATORY LICENSE Recorded Oct 5, 2021
From: UNIVERSITY OF WASHINGTON
To: NATIONAL SCIENCE FOUNDATION
Reel/Frame 057711/0415 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 19, 2021
From: SEIBEL, ERIC J.; NELSON, LEONARD Y.; SHARMA, MANUJA; GRAHAM, JASMINE
To: UNIVERSITY OF WASHINGTON
Reel/Frame 056902/0876 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 15, 2021
From: SEIBEL, ERIC J.; NELSON, LEONARD Y.; SHARMA, MANUJA; GRAHAM, JASMINE
To: UNIVERSITY OF WASHINGTON
Reel/Frame 054938/0937 →
Continuity (2)
Provisional Application 62700873 · Jul 19, 2018
Related Publication 20210263051A1 · Aug 26, 2021
References Cited (21)
US 6834237B2 · Noergaard et al. · 2004 [cited by applicant]
US 7190457B2 · Tabacco et al. · 2007 [cited by applicant]
US 9377396B2 · Goldring et al. · 2016 [cited by applicant]
US 20030212265A1 · Tsien · 2003 [cited by examiner]
US 20060275847A1 · Goodyer · 2006 [cited by examiner]
US 20090035783A1 · Yang · 2009 [cited by applicant]
US 20090124690A1 · Alberte · 2009 [cited by examiner]
US 20100291618A1 · Robinson et al. · 2010 [cited by applicant]
US 20150241438A1 · Gee et al. · 2015 [cited by applicant]
US 20160139158A1 · Dzubay · 2016 [cited by examiner]
US 20160223558A1 · Strongin · 2016 [cited by examiner]
WO 2018081637A1 · 2018 [cited by applicant]
Zhang, Liang, et al. “Trimodal detection of early childhood caries using laser light scanning and fluorescence spectroscopy: clinical prototype.” Journal of biomedical optics 18.11 (2013): 111412. [cited by applicant]
Han, Junyan, et al. “A ratiometric pH reporter for imaging protein-dye conjugates in living cells.” Journal of the American Chemical Society 131.5 (2009): 1642-1643. [cited by applicant]
Kubista, M., et al., “Quantitative Spectral Analysis of Multicomponent Equilibria,” Analytica Chimica Acta 302(1):121-125, Feb. 1995. [cited by applicant]
Sharma, M., et al., “Optical pH Measurement System Using a Single Fluorescent Dye for Assessing Susceptibility to Dental Caries,” Journal of Biomedical Optics 24(1): 017001-1-017001-8, Jan. 2019. [cited by applicant]
Susuma, K., et al., “Purple-, Blue-, and Green-Emitting Multishell Alloyed Quantum Dots: Synthesis, Characterization, and Application for Ratiometric Extracellular pH Sensing,” Chemistry of Materials 29(17): 7330-7344, … [cited by applicant]
“TRITC Excitation Filter,” Thorlabs Inc., Sep. 16, 2009, 1 page. [cited by applicant]
International Search Report and Written Opinion, mailed Oct. 3, 2019 issued in corresponding International Application No. PCT/US2019/042665, filed Jul. 19, 2019, 13 pages. [cited by applicant]
Wolf, G., et al., “Optical and Spectroscopic Methods for Biofilm Examination and Monitoring,” Reviews in Environmental Science and Biotechnology 1:227-251, Sep. 2002. [cited by applicant]
Graham, J., et al., “Optical Measurement of Acidification of Human Dental Plaque in Vitro,” Proceedings of SPIE (Society of Photo Optical Instrumentation Engineers) 10473, Lasers in Dentistry XXIV: 104730A-1-104730A10, … [cited by applicant]