IP Library Granted Patent US 12,215,128
Granted Patent B2
US 12,215,128 · App. 17/261,313 · Granted Feb 4, 2025

(Pyridinylmethyl)butanediamine derivatives that chelate copper

Inventors: Nicholas Tonks (Cold Spring Harbor, NY); Navasona Krishnan (Hawthorn Woods, IL); Andreas Grill (Saint James, NY)
Assignees: Cold Spring Harbor Laboratory; Depymed, Inc.
C07J43/003C07D213/38C07D401/12
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Quick Facts
Patent No.
US 12,215,128
App. No.
17/261,313
Granted
Feb 4, 2025
Kind
B2
Abstract

Compounds of formula: are described herein. The compounds selectively complex copper and are therefore useful both abiotically for measuring and detecting small amounts of copper and, in biological systems, for treating diseases associated with inappropriate copper levels, such as Wilson's disease and gastric cancer.

Claims (29)

1. A compound of formula:

wherein R 1 , R 2 , R 3 and R 4 are chosen independently from hydrogen, (C 1 -C 6 )alkyl, (C 1 -C 6 )oxaalkyl, and (C 1 -C 6 )aminoalkyl, or two adjacent R 1 , R 2 , R 3 and R 4 may form a five-, six-, or seven-membered ring, said five-, six-, or seven-membered ring optionally substituted with one or two substituents chosen from halogen, cyano, hydroxy, (C 1 -C 6 )alkyl, (C 1 -C 6 )oxaalkyl, and (C 1 -C 6 )aminoalkyl;

A is a polycyclic ring system chosen from one of the following ring systems:

said rings optionally substituted with one or more substituents chosen from halogen, hydroxy, (C 1 -C 6 )alkyl, oxo, (C 1 -C 6 )oxaalkyl, carboxy, (C 1 -C 6 )alkoxycarbonyl, (C 1 -C 6 )alkoxycarbonyl(C 1 -C 6 )alkyl, carboxy(C 1 -C 6 )alkyl, amino, and (C 1 -C 6 )aminoalkyl;

n is zero or one; and

p is one or two;

with the proviso that, when R 1 , R 2 , R 3 , and R 4 are all hydrogen, p is one, and n is zero, the polycyclic ring system A is not a perhydrocyclopenta[a]phenanthrene of formula

 attached at the 3-position as shown, in which a substituent at 17 is —CH(CH 3 )CH 2 CH 2 COOH, —CH(CH 3 )CH 2 CH 2 COOCH 3 , —CH(CH 3 )CH 2 CH 2 CH(OSO 3 H)CH(CH 3 ) 2 ,

 regardless of the remaining substitutions of the ring.

2. A compound according to claim 1 wherein p is one and A is

3. A compound according to claim 2 wherein the polycyclic ring system A is a perhydrocyclopenta[a]phenanthrene of formula

substituted with hydroxyl at 6 or 7, in which a substituent at 17 is (C 3 -C 8 )alkyl.

4. A compound according to claim 1 wherein A is a polycyclic ring system chosen from naphthalene, tetralin, decalin, and anthracene.

5. A compound according to claim 4 wherein p is one.

6. A compound according to claim 4 wherein p is two.

7. A compound according to claim 1 wherein A is a polycyclic ring system chosen from quinoline, isoquinoline.

8. A compound according to claim 7 wherein p is one.

9. A compound according to claim 7 wherein p is two.

10. A compound according to claim 1 wherein p is one and A is

wherein dotted lines represent optional double bonds and Q 1 and Q 2 are independently chosen from carbon and nitrogen.

11. A compound according to claim 2 wherein said polycyclic ring system is substituted with one or more substituents chosen from hydroxy, methyl, oxo, amino, (C 1 -C 6 )aminoalkyl, (C 1 -C 6 )oxaalkyl, carboxy, methoxycarbonyl, methoxycarbonyl(C 1 -C 6 )alkyl, and carboxy(C 1 -C 6 )alkyl.

12. A compound according to claim 2 wherein said polycyclic ring system is unsubstituted.

13. A compound according to claim 1 wherein any adjacent pair of R 1 , R 2 , R 3 and R 4 , taken together, form a benzene ring.

14. A compound according to claim 1 wherein R 1 , R 2 , R 3 , and R 4 are all hydrogen.

15. A compound according to claim 1 wherein n is one.

16. A compound according to claim 1 wherein n is zero.

17. A compound according to claim 1 wherein A is other than quinoline or isoquinoline.

18. A method of chelating copper, comprising contacting a sample containing copper with a compound according to claim 1 , whereby a complex between said compound and copper is formed.

19. A pharmaceutical composition comprising a pharmaceutically acceptable vehicle and a compound according to claim 1 .

Assignments (3)
CONFIRMATORY LICENSE Recorded Nov 15, 2023
From: COLD SPRING HARBOR LABORATORY
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 065593/0618 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 19, 2021
From: GRILL, ANDREAS
To: DEPYMED, INC.
Reel/Frame 054953/0387 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 19, 2021
From: TONKS, NICHOLAS; KRISHNAN, NAVASONA
To: COLD SPRING HARBOR LABORATORY
Reel/Frame 054953/0453 →
Continuity (3)
Provisional Application 62700968 · Jul 20, 2018
Provisional Application 62855031 · May 31, 2019
Related Publication 20210261602A1 · Aug 26, 2021
References Cited (8)
US 9546194B2 · McLane et al. · 2017 [cited by applicant]
US 20150099727A1 · McLane · 2015 [cited by examiner]
WO 2019090331A1 · 2019 [cited by applicant]
J. G. Cannon, Chapter Nineteen in Burger's Medicinal Chemistry and Drug Discovery, Fifth Edition, vol. I: Principles and Practice, Wiley-Interscience 1995. (Year: 1995). [cited by examiner]
International Search Report and Written Opinion issued in PCT/US2019/042580 and mailed Nov. 5, 2019. [cited by applicant]
N. Krishnan et al., “DPM-1001 decreased copper levels and ameliorated deficits in a mouse of Wilson's disease”, Gene & Development, Jun. 26, 2018, vol. 32, pp. 944-952. [cited by applicant]
N. Wilson et al., “A lipophilic copper (II) complex as an optical probe for intracellular detection of NO”, Dalton Transactions, 2016, vol. 45, No. 45, pp. 18177-18182. [cited by applicant]
N. Krishnan et al., “A potent, selective and orally bioavailable inhibitor of the protein tyrosine phosphatase PTP1B improves insulin and leptin signaling in animal models”, JBC Papers in Press, Dec. 7, 2017, Manuscrtip… [cited by applicant]