US 7560529B2
· Gabibov et al.
· 2009
[cited by applicant]
US 9790490B2
· Zhang et al.
· 2017
[cited by applicant]
US 9840702B2
· Collingwood et al.
· 2017
[cited by applicant]
US 20180179523A1
· Collingwood et al.
· 2018
[cited by applicant]
US 20190032131A1
· Turk et al.
· 2019
[cited by applicant]
US 20240199691A1
· Beaudoin et al.
· 2024
[cited by applicant]
WO 2017127807A1
· 2017
[cited by applicant]
WO 2017184768A1
· 2017
[cited by applicant]
WO 2018195545A2
· 2018
[cited by applicant]
WO 2019138052A1
· 2019
[cited by applicant]
WO 20210937752A1
· 2021
[cited by applicant]
WO 2021222703A2
· 2021
[cited by applicant]
WO 2021257716A2
· 2021
[cited by applicant]
WO 2023027041A1
· 2023
[cited by applicant]
WO 2023097316A1
· 2023
[cited by applicant]
WO 2023145833A1
· 2023
[cited by applicant]
“SEQ ID No. 3 vs SEQ ID No. 109” Downloaded from <https://blast.ncbi.nlm.nih.gov/Blast.cgi> Apr. 3, 2024. (Year: 2016).
[cited by examiner]
“SEQ ID No. 6 vs SEQ ID No. 109” Downloaded from <https://blast.ncbi.nlm.nih.gov/Blast.cgi> Apr. 3, 2024. (Year: 2016).
[cited by examiner]
Cebrian-Serrano et al., “CRISPR-Cas orthologues and variants: optimizing the repertoire, specificity and delivery of genome engineering tools”, Mammalian Genome, 2017, vol. 28, No. 7, pp. 247-261.
[cited by applicant]
Geneseq, “Lachnospiraceae bacterium Cpfl gene (PL-LbCpfl-RR) encoded nuclease”, Nov. 2017, EBI Accession No. GS_PROT:BEK39676, 1 pages.
[cited by applicant]
Abudayyeh et al., “C2c2 is a single component programmable RNA-guided RNA-targeting CRISPR effector”, Science, vol. 353(6299), 2016.
[cited by applicant]
Bowie et al., “Deciphering the Message in Protein Sequences: Tolerance to Amino Acid Substitutions”, Science, vol. 247, 1990, pp. 1306-1310.
[cited by applicant]
East-Seletsky et al., “Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection”, Nature, vol. 538 (7624), 2016, pp. 270-273.
[cited by applicant]
Gao et al., “Engineered Cpf1 variants with altered PAM specificities increase genome targeting range”, Nat Biotechnol., vol. 35, No. 8, 2017, pp. 789-792.
[cited by applicant]
Gao et al., “Type V CRISPR-Cas Cas12a endonuclease employs a unique mechanism for crRNA-mediated target DNA recognition,” Cell Research, vol. 26, 2016, pp. 901-913.
[cited by applicant]
Gibson et al., “Enzymatic assembly of DNA molecules up to several hundred kilobases”, Nature Methods, vol. 6, No. 5, 2009, pp. 343-334.
[cited by applicant]
Gootenberg et al., “Nucleic acid detection with CRISPR-Cas13a/C2c2” Science, vol. 356(6336), 2017, pp. 438-442.
[cited by applicant]
Hur et al., “Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins,” Nature Biotechnology 34(8):807-808 (2016).
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2020/19168 dated Jul. 23, 2020 (13 pages).
[cited by applicant]
Jinek et al., “A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial 5 immunity”, Science, vol. 337, 2012, pp. 816-821.
[cited by applicant]
Kim et al., “CRISPR/Cpf1-mediated DNA-free plant genome editing,” Nature Commun., vol. 8(14406), 2017, pp. 1-7.
[cited by applicant]
Kim et al., “Generation of knockdown mice by Cpf1-mediated gene targeting,” Nature Biotechnology, vol. 34, No. 8, 2016, pp. 808-810.
[cited by applicant]
Kim et al., “In vivo high-throughput profiling of CRISPR-Cpf1 activity,” Nature Methods, vol. 14, No. 2, 2017, pp. 153-159.
[cited by applicant]
Kleinstiver et al., “Engineered CRISPR-Cas 12a variants with increased activities and improved targerting ranges for gene, epigenetic and base editing”, Nat. Biotechnol., vol. 37, 2019, pp. 276-282.
[cited by applicant]
Kleinstiver et al., “Genome-wide specificities of CRISPR-Cas Cpf1 nucleases in human cells,” Nature Biotechnology, vol. 34, No. 8, 2016, pp. 869-874.
[cited by applicant]
Schindele et al., “Engineering CRISPR/LbCas12a for highly efficient, temperature tolerant plant gene editing”, Plant Biotechnol J., vol. 18, No. 5, 2020, pp. 1118-1120.
[cited by applicant]
Wrenbeck et al., “Plasmid-based one-pot saturation mutagenesis”, Nat Methods, vol. 13, 2016, pp. 928-930.
[cited by applicant]
Yamano et al., “Crystal Structure of Cpf1 in Complex with Guide RNA and Target RNA,” Cell vol. 65, 2016, pp. 949-962.
[cited by applicant]
Zetsche et al., “Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System”, Cell, vol. 163, 2015, pp. 759-771.
[cited by applicant]
Zetsche et al., “Multiplex gene editing by CRISPR-Cpf1 using a single rRNA array,” Nature Biotechnology, vol. 35, No. 1, 2017, pp. 31-34.
[cited by applicant]
Yamano T., et al. “Structural basis for the canonical and non-canonical PAM recognition by CRISPR-Cpf1.” Molecular cell 67.4 (2017): 633-645.
[cited by applicant]
European Patent Office Extended European Search Report for Application No. 20760344.0, dated Feb. 26, 2024 (8 pages).
[cited by applicant]
Canadian Patent Office Action for application 3,130,087, dated Feb. 19, 2024 (3 pages).
[cited by applicant]
Japanese Patent Office Notification of Reasons for Rejection for Application No. 2021-548687, dated Aug. 4, 2023, 14 pages with translation.
[cited by applicant]
Chinese Patent Office Notification of First Office Action for Application No. 202080015167.9, dated Sep. 27, 2023, 17 pages with translation.
[cited by applicant]
Lu Yifan et al., LbCpf1 “Prokaryotic Expression, Purification of LbCpf1 Protein Gene and in Vitro Cleavage Activity Assay.” China Biotechnology 40.8 (2020): 41-48. With English Abstract.
[cited by applicant]
Zhang, Y., et al. “Highly efficient genome editing in plant protoplasts by ribonucleoprotein delivery of CRISPR-Cas12a nucleases.” Frontiers in Genome Editing 4 (2022): 780238.
[cited by applicant]
Australian Patent Office Examination Report No. 2 for Application No. 2020226864, dated Jun. 26, 2023 (9 pages).
[cited by applicant]
Carmignotto et al., “On the expression of recombinant Cas9 protein in
[cited by applicant]
Evans et al., “Concentration of proteins and removal of solutes,” Methods Enzymol., vol. 463:97-120 (2009), PMID: 19892169 (Year: 2009).
[cited by applicant]
Francis et al., “Strategies to Optimize Protein Expression in
[cited by applicant]
Hi Trap SP HP cation exchange columns Protocol, SP Sepharose™ High Performance Ion Exchange Medium Instructions 18-1060-26-AG, GE Life Sciences, 20 pages (2014) (Year: 2014).
[cited by applicant]
Livingstone et al., Protein sequence alignments, CABIOS, vol. 9(6):745-756 (1993) (Year: 1993).
[cited by applicant]
PET System manual (Novagen, pET System Manual 10th Edition, 68 pages, published May 2003 (Year: 2003).
[cited by applicant]
Rodrigues et al, Chapter 5: One-Step Isothermal Assembly of DNA Fragments, Synthetic Biology, Methods in Molecular Biology, vol. 1073:43-47 (2013) (Year: 2013).
[cited by applicant]
Spriestersbach et al., “Purification of His-Tagged Proteins,” Methods Enzymol., vol. 559:1-15, PMID: 26096499 (Epub May 4, 2015) ( Year: 2015).
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2021/030089 dated May 20, 2022 (25 pages).
[cited by applicant]
Studer, R.A. et al. “Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes.” Biochemical journal 449.3 (2013): 581-594.
[cited by applicant]
Australian Patent Office Examination Report No. 1 for application 2020226864, dated Jan. 19, 2023 (4 pages).
[cited by applicant]
Canadian Patent Office Action for application 3,130,087, dated Nov. 24, 2022 (6 pages).
[cited by applicant]
Dayhoff, Atlas of Protein Sequences and Structure, M. O. Dayhoff ed., 5 suppl. 3: 353-358 National Biomedical Research Foundation, Washington, D.C., USA, 1978, 8 pages.
[cited by applicant]
Gribskov, M. et al. “Sigma factors from
[cited by applicant]
Smith et al. Advances in Applied Mathematics 2: 4 82-489 (1981).
[cited by applicant]
Zhang, L., et al. “AsCas 12a ultra nuclease facilitates the rapid generation of therapeutic cell medicines.” Nature communications 12.1, 2021: 3908.
[cited by applicant]
Chinese Patent Office Notification of Second Office Action for Application No. 202080015167.9, dated Apr. 19, 2024, 10 pages with translation.
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2024/026464 dated Aug. 13, 2024 (16 pages).
[cited by applicant]
Mohr, M., et al. “The CRISPR-Cas12a platform for accurate genome editing, gene disruption, and efficient transgene integration in human immune cells.” ACS synthetic biology 12.2 (2023): 375-389.
[cited by applicant]