Structural rectal atlas deformation features for characterizing intra-wall and peri-wall chemoradiation response on magnetic resonance imaging (MRI)
The present disclosure, in some embodiments, relates to a non-transitory computer-readable medium storing computer-executable instructions. The computer readable medium is configured to cause a processor to access an image volume of a rectum comprising a rectal tumor. A forward mapping is generated based on non-rigidly registering a healthy rectal atlas to the image volume. The forward mapping is inverted to generate an inverse mapping from the image volume to the healthy rectal atlas. Based on the inverse mapping, a plurality of deformation vectors, associated with a deformation within a rectal wall of the rectum, are determined. Magnitude based deformation features and orientation based deformation features are computed from the plurality of deformation vectors. One or more of the magnitude based deformation features and one or more of the orientation based deformation features are utilized to determine a response of a patient to a chemoradiation treatment.
1. A non-transitory computer-readable medium storing computer-executable instructions that, when executed, cause a processor to perform operations, comprising:
accessing an image volume of a rectum comprising a rectal tumor;
generating a forward mapping based on non-rigidly registering a healthy rectal atlas to the image volume;
inverting the forward mapping to generate an inverse mapping from the image volume to the healthy rectal atlas;
determining, based on the inverse mapping, a plurality of deformation vectors associated with a deformation within a rectal wall of the rectum;
computing magnitude based deformation features from the plurality of deformation vectors;
computing orientation based deformation features from the plurality of deformation vectors; and
utilizing one or more of the magnitude based deformation features and one or more of the orientation based deformation features to determine a response of a patient to a chemoradiation treatment.
2. The non-transitory computer-readable medium of claim 1 , wherein the image volume is obtained prior to the chemoradiation treatment.
3. The non-transitory computer-readable medium of claim 1 , wherein the image volume is obtained after the chemoradiation treatment.
4. The non-transitory computer-readable medium of claim 1 , wherein the rectal wall comprises a plurality of deformations and the deformation is a largest deformation of the plurality of deformations.
5. The non-transitory computer-readable medium of claim 1 , further comprising:
determining a set of relevant magnitude based deformation features from the magnitude based deformation features, the set of relevant magnitude based deformation features being less than the magnitude based deformation features; and
utilizing the set of relevant magnitude based deformation features and the one or more of the orientation based deformation features to determine a prognosis associated with tumor regression.
6. The non-transitory computer-readable medium of claim 1 , further comprising:
determining a plurality of deformation angles corresponding to the plurality of deformation vectors;
placing the plurality of deformation angles into a plurality of bins; and
determining an orientation based deformation feature of the orientation based deformation features based on one or more of the plurality of deformation angles within one the plurality of bins.
7. The non-transitory computer-readable medium of claim 6 , further comprising:
determining the deformation angles with respect to a lumen centroid of the rectum.
8. The non-transitory computer-readable medium of claim 6 , wherein the plurality of bins respectively correspond to different ranges of angles between 0° and 180°.
9. The non-transitory computer-readable medium of claim 6 , wherein the plurality of bins comprise a first bin with one or more first deformation angles indicating the deformation is increasing in size and a second bin with one or more second deformation angles indicating that the deformation is decreasing in size.
10. The non-transitory computer-readable medium of claim 1 , wherein the orientation based deformation features describe a direction of a change in size of the rectal tumor.
11. A non-transitory computer-readable medium storing computer-executable instructions that, when executed, cause a processor to perform operations, comprising:
accessing an image volume of a rectum having a rectal wall, wherein the rectal wall comprises a plurality of deformations;
generating a forward mapping based on non-rigidly registering a healthy rectal atlas to the image volume;
inverting the forward mapping to generate an inverse mapping from the image volume to the healthy rectal atlas;
determining a plurality of deformation vectors for a plurality of voxels within the inverse mapping, the plurality of deformation vectors describing a deformation within the rectal wall that is a largest deformation of the plurality of deformations;
computing magnitude based deformation features and orientation based deformation features from the plurality of deformation vectors; and
utilizing one or more of the magnitude based deformation features and one or more of the orientation based deformation features to determine a magnitude and a direction of a change in the deformation.
12. The non-transitory computer-readable medium of claim 11 , further comprising:
determining a set of relevant magnitude based deformation features from the magnitude based deformation features, the set of relevant magnitude based deformation features being less than the magnitude based deformation features; and
utilizing the set of relevant magnitude based deformation features and the one or more of the orientation based deformation features to determine a prognosis associated with tumor regression.
13. The non-transitory computer-readable medium of claim 11 , further comprising:
utilizing one or more of the magnitude based deformation features and one or more of the orientation based deformation features to determine a response of a patient to chemoradiation treatment.
14. The non-transitory computer-readable medium of claim 11 , further comprising:
determining a plurality of deformation angles corresponding to the plurality of deformation vectors;
placing the plurality of deformation angles into a plurality of bins; and
determining an orientation based deformation feature of the orientation based deformation features based on one or more of the plurality of deformation angles within one the plurality of bins.
15. The non-transitory computer-readable medium of claim 14 , further comprising:
determining the deformation angles with respect to a lumen centroid of the rectum.
16. The non-transitory computer-readable medium of claim 11 , wherein the magnitude based deformation features comprise one or more of a median, variance, kurtosis, and skewness.
17. The non-transitory computer-readable medium of claim 11 , wherein the image volume is a Magnetic Resonance Imaging (MRI) image volume.
18. A method of performing a prognosis of medical treatment, comprising:
accessing an image volume of a rectum having a rectal wall, wherein the rectal wall comprises a plurality of deformations;
generating a forward mapping based on non-rigidly registering a healthy rectal atlas to the image volume;
inverting the forward mapping to generate an inverse mapping from the image volume to the healthy rectal atlas;
determining, based on the inverse mapping, a plurality of deformation vectors describing a deformation within the rectal wall, wherein the deformation is a largest deformation of the plurality of deformations;
computing magnitude based deformation features and orientation based deformation features from the plurality of deformation vectors; and
utilizing one or more of the magnitude based deformation features and one or more of the orientation based deformation features to determine a magnitude and direction of a change in the deformation due to a chemotherapy treatment.
19. The method of claim 18 , further comprising:
obtaining the image volume prior to the chemotherapy treatment.
20. The method of claim 18 , further comprising:
obtaining the image volume after the chemotherapy treatment.