Imaging systems with micro optical element arrays and methods of specimen imaging
Disclosed herein are systems for imaging of samples using an array of micro optical elements and methods of their use. In some embodiments, an optical chip comprising an array of micro optical elements moves relative to an imaging window and a detector in order to scan over a sample to produce an image. A focal plane can reside within a sample or on its surface during imaging. Detecting optics are used to detect back-emitted light collected by an array of micro optical elements that is generated by an illumination beam impinging on a sample. In some embodiments, an imaging system has a large field of view and a large optical chip such that an entire surface of a sample can be imaged quickly. In some embodiments, a sample is accessible by a user during imaging due to the sample being exposed while disposed on or over an imaging window.
1. A method of generating tagged images of tissue samples, the method comprising:
producing, by a processor, a set of tagged images, wherein each image of the set of tagged images (i) was acquired with an imaging system comprising a micro optical element array, (ii) corresponds to a respective area of a tissue sample and (iii) is tagged with at least one of:
respective location data that indicates a location on the tissue sample when the tissue specimen was within a body or anatomical structure, and
respective specimen orientation information that indicates an orientation of the tissue sample relative to the imaging system when the image was taken.
2. The method of claim 1 , wherein producing the set of tagged images comprises, for each image in the set of tagged images, operating, by the processor, a controller to scan the micro optical element array along a scan pattern while providing illumination light to the tissue sample through the micro optical element array and collecting back-emitted light from the tissue sample at a detector through the micro optical element array.
3. The method of claim 2 , wherein producing the set of tagged images occurs in less than 10 minutes.
4. The method of claim 1 , comprising analyzing, by the processor, at least one of the set of tagged images for identification of disease for purposes of tissue removal and/or preservation in a surgical procedure.
5. The method of claim 4 , wherein the analyzing occurs automatically, by the processor, to each image in the set of tagged images.
6. The method of claim 1 , wherein producing the set of tagged images comprises, for each of the tagged images in the set:
providing, by the processor, one or more graphical user interfaces to a user on a display of the imaging system;
receiving, by the processor, one or more user selections input into the one or more graphical user interfaces;
determining, by the processor, the at least one of the respective location data and the respective specimen orientation information based on the one or more user selections; and
associating, by the processor, each image of a set of untagged images of the tissue sample with the at least one of the respective location data and the respective specimen orientation information thereby forming the set of tagged images.
7. The method of claim 6 , wherein the one or more user selections are entered on a touchscreen monitor of the imaging system.
8. The method of claim 6 , wherein associating comprises storing, by the processor, the at least one of the respective location data and the respective specimen orientation information in metadata of each of the tagged images.
9. The method of claim 6 , wherein associating comprises storing, by the processor, the at least one of the respective location data and the respective specimen orientation information in a database corresponding to the set of tagged images.
10. The method of claim 6 , wherein:
(i) the at least one of the respective location data and the respective specimen orientation information is both the respective location data and the respective specimen orientation information,
(ii) the respective location data is determined based on one of the one or more user selections input into one of the one or more graphical user interfaces that comprises a graphical representation of an anatomical structure, and
(iii) the respective specimen orientation information is determined based on another of the one or more user selections input into another of the one or more graphical user interfaces that comprises a graphical representation of one or more anatomical planes.
11. The method of claim 10 , wherein the anatomical structure is a human breast.
12. The method of claim 6 , comprising:
displaying, by the processor, an annotation graphical user interface of the one or more graphical user interfaces; and
receiving, by the processor, via the annotation graphical user interface, one or more subsequent user inputs, wherein the one or more subsequent user inputs comprises graphical or data field information including graphical or textual annotations to a displayed image.
13. The method of claim 12 , wherein the subsequent user input comprises graphical or data field information including graphical information delineating a region of interest.
14. The method of claim 1 , wherein the tissue sample is a freshly resected cancerous tissue sample.
15. The method of claim 1 , wherein the tissue sample has a thickness that is within a range of 0.5 mm-10 cm.
16. The method of claim 1 , wherein the imaging system is in an operating room.
17. The method of claim 16 , wherein the method is performed intraoperatively.
18. The method of claim 1 , wherein the processor is comprised in the imaging system.
19. The method of claim 1 , comprising sending, by the processor, the set of tagged images to a remote receiving device external to the imaging system.
20. The method of claim 19 , wherein the remote receiving device is a radiology PACS, a pathology PACS, or a laboratory information system.
21. A system for tagging images of tissue samples, the system comprising:
a processor; and
a memory having instructions stored thereon, wherein the instructions, when executed by the processor, cause the processor to:
produce a set of tagged images, wherein each image of the set of tagged images (i) was acquired with an imaging system comprising a micro optical element array, (ii) corresponds to a respective area of the tissue sample and (iii) is tagged with at least one of:
respective location data that indicates a location on the tissue sample when the tissue specimen was within a body or anatomical structure, and
respective specimen orientation information that indicates an orientation of the tissue sample relative to the imaging system when the image was taken.
22. The system of claim 21 , wherein the instructions, when executed by the processor, cause the processor to, for each of the tagged images in the set:
provide one or more graphical user interfaces to a user on a display of the imaging system;
receive one or more user selections input into the one or more graphical user interfaces;
determine the at least one of the respective location data and the respective specimen orientation information based on the one or more user selections; and
associate each image of a set of untagged images of the tissue sample with the at least one of the respective location data and the respective specimen orientation information thereby forming the set of tagged images.