IP Library Granted Patent US 11,938,137
Granted Patent B2
US 11,938,137 · App. 17/586,515 · Granted Mar 26, 2024

Lipid prodrugs of mycophenolic acid and uses thereof

Inventors: Daniel Kenneth Bonner (Sharon, MA); Ketki Karanam (Newton, MA); Sifei Han (Clayton, AU); Luojuan Hu (Clayton, AU); Christopher John Hamilton Porter (Clayton, AU); Tim Quach (Clayton, AU); Rishab R. Shyam (Arlington, MA); Jamie Simpson (Chestnut Hill, MA); Natalie Trevaskis (Clayton, AU)
Assignees: PureTech LYT, Inc.; Monash University
A61K31/5377A61K47/542A61P37/06C07D413/12
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Quick Facts
Patent No.
US 11,938,137
App. No.
17/586,515
Granted
Mar 26, 2024
Kind
B2
Abstract

The present invention provides lymphatic system-directing lipid prodrugs, pharmaceutical compositions thereof, methods of producing such prodrugs and compositions, and methods of improving the bioavailability or other properties of a therapeutic agent that comprises part of the lipid prodrug. The present invention also provides methods of treating a disease, disorder, or condition such as those disclosed herein, comprising administering to a patient in need thereof a disclosed lipid prodrug or a pharmaceutical composition thereof.

Claims (49)

1. A method of treating an autoimmune disease, disorder, or condition, organ transplant rejection, graft-versus-host disease, or implant rejection in a patient in need thereof, comprising administering to the patient an effective amount of a compound of Formula VI:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 and R 2 are each independently hydrogen, an acid-labile group, a lipid, or —C(O)R 3 ;

each R 3 is independently a saturated or unsaturated, straight or branched, optionally substituted C 1-37 hydrocarbon chain;

X is —O—, —NR—, —S—, —O(C 1-6 aliphatic)—O—, —O(C 1-6 aliphatic)—S—, —O(C 1-6 aliphatic)—NR—, —S(C 1-6 aliphatic)—O—, —S(C 1-6 aliphatic)—S—, —S(C 1-6 aliphatic)—NR—, —NR(C 1-6 aliphatic)—O—, —NR(C 1-6 aliphatic)—S—, or —NR(C 1-6 aliphatic)—NR—, wherein 0-2 methylene units of the C 1-6 aliphatic group are independently and optionally replaced with —O—, —NR—, or —S— and the C 1-6 aliphatic group is independently and optionally substituted with 1, 2, or 3 deuterium or halogen atoms;

each R is independently hydrogen or an optionally substituted group selected from C 1-6 aliphatic, a 3-8 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, an 8-10 membered bicyclic aromatic carbocyclic ring, a 4-8 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an 8-10 membered bicyclic heteroaromatic ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur;

Y is absent or is —C(O)—, —C(NR)—, or —C(S)—;

L is a covalent bond or a saturated or unsaturated, straight or branched, optionally substituted bivalent C 1-30 hydrocarbon chain, wherein 0-8 methylene units of L are independently replaced by -Cy-, —O—, —NR—, —S—, —OC(O)—, —C(O)O—, —C(O)—, —S(O)—, —S(O) 2 —, —C(S)—, —NRS(O) 2 —, —S(O) 2 NR—, —NRC(O)—, —C(O)NR—, —OC(O)NR—, —NRC(O)O—, or an amino acid; and wherein 1 methylene unit of L is optionally replaced with -M-; or L is

wherein either the right-hand side or left-hand side of L is attached to A;

each -Cy- is independently an optionally substituted 3-6 membered bivalent saturated, partially unsaturated, or aromatic ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur;

each R 4 and R 5 is independently hydrogen, deuterium, halogen, —CN, —OR, —NR 2 , —SR, a 3-8 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, an 8-10 membered bicyclic aromatic carbocyclic ring, a 4-8 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an 8-10 membered bicyclic heteroaromatic ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a C 1-6 aliphatic group optionally substituted with —CN, —OR, —NR 2 , —SR, a 3-8 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, an 8-10 membered bicyclic aromatic carbocyclic ring, a 4-8 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an 8-10 membered bicyclic heteroaromatic ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or the C 1-6 aliphatic is optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms; or

two instances of R 4 or R 5 attached to the same carbon atom, taken together with the carbon atom to which they are attached, form a 3-6 membered saturated monocyclic carbocyclic ring or 3-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur;

-M- is a self-immolative group;

n is 0-18;

each m is independently 0-6;

A is a therapeutic agent selected from mycophenolic acid or a derivative, analogue, or prodrug thereof;

the autoimmune disease, disorder, or condition is Behcet's disease, pemphigus vulgaris, refractory incomplete systemic lupus erythematosus, retroperitoneal fibrosis, idiopathic thrombocytopenic purpura (ITP), scleroderma (systemic sclerosis or SSc), pemphigus vulgaris, granulomatosis with polyangiitis, immunoglobulin A nephropathy, small vessel vasculitis, retroperitoneal fibrosis, or psoriasis; and

the organ transplant is selected from a skin, liver, heart, kidney, pancreas, thymus, small intestine, large intestine, uterus, a vascularized composite allograft (VCA), bone marrow, allogenic blood and marrow transplant (BMT), cornea, or lung transplant.

2. The method according to claim 1 , wherein R 1 and R 2 are —C(O)R 3 and each R 3 is independently a saturated or unsaturated, unbranched C 2-37 hydrocarbon chain.

3. The method according to claim 1 , wherein X is —O— and Y is —C(O)—.

4. The method according to claim 1 , wherein L is a covalent bond or a saturated or unsaturated, straight or branched, optionally substituted bivalent C 6-20 hydrocarbon chain, wherein 0-8 methylene units of L are independently replaced by -Cy-, —O—, —NR—, —S—, —OC(O)—, —C(O)O—, —C(O)—, —S(O)—, —S(O) 2 —, —C(S)—, —NRS(O) 2 —, —S(O) 2 NR—, —NRC(O)—, —C(O)NR—, —OC(O)NR—, —NRC(O)O—, or an amino acid selected from

and wherein 1 methylene unit of L is optionally replaced with -M-; or L is

wherein either the right-hand side or left-hand side of L is attached to A.

5. The method according to claim 1 , wherein L is a saturated bivalent C 3-25 hydrocarbon chain optionally substituted with 1, 2, 3, or 4 groups selected from deuterium, halogen, —CN, a 3-6 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, a 4-6 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a C 1-6 aliphatic group optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms; wherein 0-4 methylene units of L are independently replaced by —O—, —OC(O)—, —C(O)O—, or —C(O)—; and 1 methylene unit of L is optionally replaced with -M-.

6. The method according to claim 1 , wherein -M- is:

wherein each R 6 is independently selected from hydrogen, deuterium, C 1-10 aliphatic, halogen, or —CN;

each R 7 is independently selected from hydrogen, deuterium, halogen, —CN, —OR, —NR 2 , —NO 2 , —SR, a 3-8 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, an 8-10 membered bicyclic aromatic carbocyclic ring, a 4-8 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an 8-10 membered bicyclic heteroaromatic ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or a C 1-6 aliphatic group optionally substituted with —CN, —OR, —NR 2 , —SR, a 3-8 membered saturated or partially unsaturated monocyclic carbocyclic ring, phenyl, an 8-10 membered bicyclic aromatic carbocyclic ring, a 4-8 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur, a 5-6 membered monocyclic heteroaromatic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or an 8-10 membered bicyclic heteroaromatic ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or the C 1-6 aliphatic is optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms;

each Z 1 is independently selected from —O—, —NR—, or —S—;

each Z 2 is independently selected from —O—, —NR—, —S—, —OC(O)—, —NRC(O)O—, or —OC(O)NR—

each Z 3 is independently selected from ═N— or ═C(R 7 )—; and

each Z 4 is independently selected from —O—, —NR—, —S—, —C(R 6 ) 2 —, or a covalent bond.

7. The method according to claim 6 , wherein -M- is selected from

8. The method according to claim 6 , wherein -M- is selected from

9. The method according to claim 1 , wherein each R 4 is independently hydrogen, deuterium, halogen, —CN, or C 1-4 aliphatic optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms; or two instances of R 4 attached to the same carbon atom, taken together with the carbon atom to which they are attached, form a 3-6 membered saturated monocyclic carbocyclic ring or 3-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur.

10. The method according to claim 1 , wherein each R 5 is independently hydrogen, deuterium, halogen, —CN, or C 1-4 aliphatic optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms; or two instances of R 5 attached to the same carbon atom, taken together with the carbon atom to which they are attached, form a 3-6 membered saturated monocyclic carbocyclic ring or 3-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, or sulfur.

11. The method according to claim 1 , wherein each R 4 and R 5 is independently hydrogen or C 1-4 alkyl optionally substituted with 1, 2, 3, 4, 5, or 6 deuterium or halogen atoms.

12. The method according to claim 1 , wherein the compound is of Formula VI-a or VI-b:

or a pharmaceutically acceptable salt thereof.

13. The method according to claim 1 , wherein said compound is of Formula VIII-a or VIII-b:

or a pharmaceutically acceptable salt thereof, wherein A is

14. The method according to claim 13 , wherein A is

and R is C 1-6 aliphatic or phenyl.

15. The method according to claim 1 , wherein the compound is of Formula XI-d:

or a pharmaceutically acceptable salt thereof.

16. The method according to claim 1 , further comprising the step of administering an additional therapeutic agent.

17. The method according to claim 1 , wherein the compound or pharmaceutically acceptable salt thereof is delivered selectively to B or T lymphocytes or modulates the activity of B or T lymphocytes.

18. The method according to claim 1 , wherein the compound or pharmaceutically acceptable salt thereof modulates the activity of one or more of B cells, dendritic cells, granulocytes, innate lymphoid cells (ILCs), megakaryocytes, monocytes/macrophages, myeloid-derived suppressor cells (MDSC), natural killer (NK) cells, platelets, red blood cells (RBCs), T cells, or thymocytes.

19. The method according to claim 1 , wherein the compound or pharmaceutically acceptable salt thereof exhibits increased delivery at a given dose, or more selective delivery at a given dose, to B or T lymphocytes as compared with a corresponding dose of a non-lipid prodrug form of mycophenolic acid, or a derivative, analogue, or prodrug thereof.

20. The method according to claim 1 , wherein a given dose of the compound or pharmaceutically acceptable salt thereof more effectively modulates the activity of one or more of B cells, dendritic cells, granulocytes, innate lymphoid cells (TLCs), megakaryocytes, monocytes/macrophages, myeloid-derived suppressor cells (MDSC), natural killer (NK) cells, platelets, red blood cells (RBCs), T cells, or thymocytes, as compared with a corresponding dose of a non-lipid prodrug form of mycophenolic acid, or a derivative, analogue, or prodrug thereof.

Assignments (7)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 13, 2024
From: PURETECH LYT, INC.
To: SEAPORT THERAPEUTICS, INC.
Reel/Frame 068585/0942 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2023
From: BONNER, DANIEL KENNETH; SIMPSON, JAMIE
To: ARIYA THERAPEUTICS, INC.
Reel/Frame 064565/0820 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2023
From: SHYAM, RISHAB R.
To: PURETECH HEALTH LLC
Reel/Frame 064566/0100 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2023
From: KARANAM, KETKI
To: PURETECH MANAGEMENT, INC.
Reel/Frame 064565/0685 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2023
From: PURETECH HEALTH LLC; PURETECH MANAGEMENT, INC.
To: ARIYA THERAPEUTICS, INC.
Reel/Frame 064566/0581 →
CHANGE OF NAME Recorded Aug 11, 2023
From: ARIYA THERAPEUTICS, INC.
To: PURETECH LYT, INC.
Reel/Frame 064572/0469 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 11, 2023
From: HAN, SIFEI; HU, LUOJUAN; PORTER, CHRISTOPHER JOHN HAMILTON; QUACH, TIM; TREVASKIS, NATALIE
To: MONASH UNIVERSITY
Reel/Frame 064566/0305 →
Continuity (5)
Continuation 16955162
Provisional Application 62768583 · Nov 16, 2018
Provisional Application 62724274 · Aug 29, 2018
Provisional Application 62607749 · Dec 19, 2017
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