US 4135884A
· Shen
· 1979
[cited by applicant]
US 4305924A
· Piasio et al.
· 1981
[cited by applicant]
US 4444880A
· Tom
· 1984
[cited by applicant]
US 4943522A
· Eisinger et al.
· 1990
[cited by applicant]
US 5585089A
· Queen et al.
· 1996
[cited by applicant]
US 5622871A
· May et al.
· 1997
[cited by applicant]
US 5770460A
· Pawlak et al.
· 1998
[cited by applicant]
US 6187598B1
· May et al.
· 2001
[cited by applicant]
US 6485982B1
· Charlton
· 2002
[cited by applicant]
US 6565808B2
· Hudak et al.
· 2003
[cited by applicant]
US 6808710B1
· Wood et al.
· 2004
[cited by applicant]
US 6809687B2
· Yuanzhu
· 2004
[cited by applicant]
US 6824989B1
· Eisinger et al.
· 2004
[cited by applicant]
US 6835823B2
· Le et al.
· 2004
[cited by applicant]
US 7427605B2
· Davis et al.
· 2008
[cited by applicant]
US 8172901B2
· Altman et al.
· 2012
[cited by applicant]
US 8329660B2
· Kuchroo et al.
· 2012
[cited by applicant]
US 8673301B2
· Bonnichsen et al.
· 2014
[cited by applicant]
US 20020058037A1
· Noelle et al.
· 2002
[cited by applicant]
US 20040184954A1
· Guo et al.
· 2004
[cited by applicant]
US 20110009960A1
· Altman et al.
· 2011
[cited by applicant]
US 20120296352A1
· Altman et al.
· 2012
[cited by applicant]
US 20140127225A1
· Basi et al.
· 2014
[cited by applicant]
US 20160145355A1
· Saha et al.
· 2016
[cited by applicant]
US 20160166520A1
· Elias et al.
· 2016
[cited by applicant]
US 20190031785A1
· Schuetz
· 2019
[cited by examiner]
US 20210369709A1
· Rukazenkov et al.
· 2021
[cited by applicant]
US 20210395377A1
· Elias et al.
· 2021
[cited by applicant]
US 20220370608A1
· Penna et al.
· 2022
[cited by applicant]
US 20230046834A1
· Elias et al.
· 2023
[cited by applicant]
US 20230183323A1
· Elias et al.
· 2023
[cited by applicant]
US 20230406958A1
· Elias et al.
· 2023
[cited by applicant]
US 20240076407A1
· Elias et al.
· 2024
[cited by applicant]
CN 103987405A
· 2014
[cited by applicant]
CN 105092855A
· 2015
[cited by applicant]
CN 109575139A
· 2019
[cited by applicant]
JP 2018525347A
· 2018
[cited by applicant]
WO 9501995A1
· 1995
[cited by applicant]
WO 9623071A2
· 1996
[cited by applicant]
WO 9740068A1
· 1997
[cited by applicant]
WO 03063792A2
· 2003
[cited by applicant]
WO 2004106383A1
· 2004
[cited by applicant]
WO 2006089549A1
· 2006
[cited by applicant]
WO 2007027748A2
· 2007
[cited by applicant]
WO 2009092382A1
· 2009
[cited by applicant]
WO 2012051734A1
· 2012
[cited by applicant]
WO 2018129261A1
· 2018
[cited by applicant]
WO 2018188612A1
· 2018
[cited by applicant]
WO 2019009727A1
· 2019
[cited by applicant]
WO 2019036566A1
· 2019
[cited by applicant]
WO 2019040685A1
· 2019
[cited by applicant]
WO WO2019042153A1
· 2019
[cited by examiner]
WO WO2019060675A1
· 2019
[cited by examiner]
WO 2019062755A1
· 2019
[cited by applicant]
WO 2019070908A1
· 2019
[cited by applicant]
WO 2019090002A1
· 2019
[cited by applicant]
WO 2019157533A1
· 2019
[cited by applicant]
WO 2021102131A1
· 2021
[cited by applicant]
Islam and Khan, “Lung biopsy cells transcriptional landscape from COVID-19 patient stratified lung injury in SARS-COV-2 infection through impaired pulmonary surfactant metabolism” BioRxiv, May 8, 2020, https://doi.org/1…
[cited by examiner]
Diao et al., “Reduction and Functional Exhaustion of T Cells in Patients with Coronavirus Disease 2019 (COVID-19)”, MedRxiv, Feb. 20, 2020, https://doi.org/10.1101/2020.02.18.20024364 (Year: 2020).
[cited by examiner]
Libreros et al., “Induction of proinflammatory mediators by CHI3L1 is reduced by chitin treatment: decreased tumor metastasis in a breast cancer model”, Int. J. Cancer, 2012, 131:377-386 (Year: 2012).
[cited by examiner]
Kim et al., “Regulation of chitinase-3-like-1 in T cell elicits Th1 and cytotoxic responses to inhibit lung metastasis”, Nat Comm, 2018 , 9:503 (Year: 2018).
[cited by examiner]
Koopmans et al., “A novel bispecific antibody for EGFR-directed blockade of the PD-1/PD-L1 immune checkpoint”, Oncoimmunol, 2018, 7:8 (Year: 2018).
[cited by examiner]
Vivarella et al., “Immune-checkpoint inhibitors from cancer to COVID-19: A promising avenue for the treatment of patients with COVID-19”, Int J Oncol, 2021, 58:145-157 (Year: 2021).
[cited by examiner]
Pezeshki & Rezaei, “Immune checkpoint inhibition in COVID-19: risks and benefits”, Exp Opin Biol Ther, 2021, 21:9, 1173-1179 (Year: 2021).
[cited by examiner]
Kimura et al., “Identification of serum prognostic biomarkers of severe COVID-19 using a quantitative proteomic approach”, Sci Rep , 2021, 11:20638 (Year: 2021).
[cited by examiner]
Freeman, G. J., et al., “Engagement of the PD-1 Immunoinhibitory Receptor by a Novel B7 Family Member Leads to Negative Regulation of Lymphocyte Activation”, Journal of Experimental Medicine, vol. 192, No. 7, Oct. 2, 20…
[cited by examiner]
Houston, D. R., et al., “Structure and Ligand-induced Conformational Change of the 39-kDa Glycoprotein from Human Articular Chondrocytes”, 2003, J Biol Chem, 278:32, p. 30206-30212 (Year: 2003).
[cited by examiner]
Libreros, S., et al., “CHI3L1 plays a role in cancer through enhanced production of pro-inflammatory/pro-tumorigenic and angiogenic factors”, Immunol Res (2013) 57:99-105 (Year: 2013).
[cited by examiner]
McDermott & Atkins, “PD-1 as a potential target in cancer therapy”, Cancer Med, 2013; 2(5): 662-673 (Year: 2013).
[cited by examiner]
Schreiber et al., “3D-Epitope-Explorer (3DEX): Localization of Conformational Epitopes within Three-Dimensional Structures of Proteins”, 2005, Journal of Computational Chemistry, 42-44:60596 (Year: 2005).
[cited by examiner]
Almagro and Fransson, “Humanization of antibodies”, 2008, Fronteirs in Bioscience 13,1619-1633 (Year: 2008).
[cited by examiner]
Gershoni, J. M., et al., “Epitope Mapping The First Step in Developing Epitope-Based Vaccines”, 2007, Biodrugs, 21(3): 145-156 (Year: 2007).
[cited by examiner]
Blythe, M. J. and Flower, D. R., “Benchmarking B cell epitope prediction: Underperformance of existing methods”, 2005, Protein Science, 14:246-248 (Year: 2005).
[cited by examiner]
International Search Report and Written Opinion received in International Application No. PCT/US2020/031710, mailed on Sep. 9, 2020, 15 pages.
[cited by applicant]
“International Search Report and Written Opinion received for Application No. PCT/US2023/081359, mailed on Jun. 13, 2024”, 16 pages.
[cited by applicant]
“Extended European Search Report and Search Opinion received for EP Patent Application No. 19882794.1, mailed Aug. 11, 2022”, 8 pages.
[cited by applicant]
“Extended European Search Report received for EP Patent Application No. 18736054.0, mailed on Nov. 13, 2020”, Nov. 13, 2020, 14 pages.
[cited by applicant]
“Extended European Search Report received for European Application No. EP20889751.2, mailed on Apr. 29, 2024”, 10 pages.
[cited by applicant]
“Extended European Search Report received in European Patent Application No. 18848101.4, mailed on Apr. 13, 2021”, 10 pages.
[cited by applicant]
“International Search Report and Written Opinion for PCT/US2019/060288 mailed Feb. 10, 2020”, Feb. 10, 2020, 13 Pages.
[cited by applicant]
“International Search Report and Written Opinion received for PCT Patent Application No. PCT/US2018/047633, mailed on Dec. 13, 2018”, 13 pages.
[cited by applicant]
“International Search Report and Written Opinion received for PCT Patent Application No. PCT/US2020/061267, mailed on Mar. 12, 2021”, 12 pages.
[cited by applicant]
“International Search Report and Written Opinion received for PCT Patent Application No. PCT/US2021/033085, mailed on Nov. 4, 2021”, 14 pages.
[cited by applicant]
“Invitation to Pay Additional Fees received for Application No. PCT/US2023/081359, mailed on Apr. 30, 2024”, 3 pages.
[cited by applicant]
“Partial Supplementary European Search Report received for EP Patent Application No. 18736054.0, mailed on Aug. 10, 2020”, 15 pages.
[cited by applicant]
“Partial Supplementary European Search Report received for European Patent Application No. 20889751.2, Mailed on Jan. 19, 2024”, 11 pages.
[cited by applicant]
Abaza , et al., “Effects of Amino Acid Substitutions Outside an Antigenic Site on Protein Binding to Monoclonal Antibodies of Predetermined Specificity Obtained by Peptide Immunization: Demonstration with Region 94-100 …
[cited by applicant]
Almagro , et al., “Humanization of antibodies”, Frontiers in Bioscience, vol. 13, 2008, pp. 1619-1633.
[cited by applicant]
Becerra-Flores , et al., “SARS-COV-2 Viral Spike G614 Mutation Exhibits Higher Case Fatality Rate”, International Journal of Clinical Practice, vol. 74, 2020, pp. 1-4.
[cited by applicant]
Brinkmann , et al., “The Making of Bispecific Antibodies”, Monoclonal antibodies (MAbs), vol. 9, No. 2, Jan. 10, 2017, pp. 182-212.
[cited by applicant]
Canet , et al., “Modeling Human Nonalcoholic Steatohepatitis-Associated Changes in Drug Transporter Expression Using Experimental Rodent Models”, Drug Metabolism and Disposition vol. 42, No. 4,, Apr. 2014, pp. 586-595.
[cited by applicant]
Carter , et al., “Engineering antibodies for imaging and therapy”, Current Opinion in Biotechnology, 1997, pp. 449-454.
[cited by applicant]
Chames , et al., “Therapeutic antibodies: successes, limitations and hopes for the future”, British J. of Pharmacology, vol. 157, 2009, pp. 220-233.
[cited by applicant]
Choi , et al., “High Serum YKL-40 is a Poor Prognostic Marker in Patients With Advanced Non-Small Cell Lung Cancer”, Acta Oncologica, vol. 49, Issue 6, 2010, pp. 861-864.
[cited by applicant]
Choi , et al., “Human Regulatory T Cells Kill Tumor Cells Through Granzyme-dependent Cytotoxicity Upon Retargeting With a Bispecific Antibody”, Cancer Immunology Research, vol. 1, No. 3, 2013, pp. 163-167.
[cited by applicant]
Chupp , et al., “A Chitinase-Like Protein in the Lung and Circulation of Patients with Severe Asthma”, The New England Journal of Medicine, vol. 357, No. 20, 2007, pp. 2016-2027.
[cited by applicant]
Colman, P.M. , “Effects of amino acid sequence changes on antibody-antigen interactions”, Research in Immunology, vol. 145,, 1994, pp. 33-36.
[cited by applicant]
Dixon , “Evaluation of the CASP2 docking section”, Proteins, Suppl 1, 1997, pp. 198-204.
[cited by applicant]
Farrell , et al., “Nonalcoholic Fatty Liver Disease: From Steatosis to Cirrhosis”, Hepatology, vol. 43, Feb. 2006, pp. S99-S112.
[cited by applicant]
Gura, T , “Systems for identifying new drugs are often faulty”, Science, vol. 278, 1997, pp. 1041-1042.
[cited by applicant]
Gussow, et al., “Humanization of Monoclonal Antibodies”, Methods in Enzymology, vol. 203, 1991, pp. 99-121.
[cited by applicant]
Junker , et al., “Expression of Ykl-40 by Peritumoral Macrophages in Human Small Cell Lung Cancer”, Lung Cancer vol. 48, No. 2, 2005, pp. 223-231.
[cited by applicant]
Kaiser, Jocelyn , “First Pass at Cancer Genome Reveals Complex Landscape”, Science, vol. 313, 2006, p. 1370.
[cited by applicant]
Kim , et al., “Suppression of metastasis through inhibition of chitinase 3-like 1 expression by miR-125a-3p-mediated up-regulation of USFI”, Theranosti CS, vol. 8, No. 16, Jan. 1, 2018, pp. 4409-4428.
[cited by applicant]
Kouklis , et al., “In vitro assembly properties of vimentin mutagenized at the-site tail motif”, J Cell Science, vol. 106, No. 3, 1993, pp. 919-928.
[cited by applicant]
Kumagai , et al., “Serum YKL-40 as a marker of liver fibrosis in patients with non-alcoholic fatty liver disease”, Scientific Reports, vol. 6: 35282, 2016, 10 pages.
[cited by applicant]
Kzhyshkowska, Julia , et al., “Role of chitinase-like proteins in cancer”, Biological Chemistry, vol. 397, No. 3, Retrieved from the Internet: URL:http://dx.doi.org/10.1515/hsz-2015-0269>, Mar. 1, 2016, pp. 231-247.
[cited by applicant]
Lazerow, et al., “Drug-Induced Liver Disease 2004”, Curr. Opin. Gastroenterol., vol. 21, No. 3, May 2005, pp. 283-292.
[cited by applicant]
Lee , et al., “Role of Breast Regression Protein 39 (BRP-39)/Chitinase 3-Like-1 in Th2 and IL-13-Induced Tissue Responses and Apoptosis”, J. Exp. Med., vol. 206, No. 5, DOI: 10.1084/jem.20081271, May 11, 2009, pp. 1149-…
[cited by applicant]
Lensink , et al., “Docking and scoring protein complexes: CAPRI 3rd Edition”, Proteins, vol. 69, 2007, pp. 704-718.
[cited by applicant]
Li , et al., “SARS-CoV-2 Viremia is Associated with Distinct Proteomic Pathways and Predicts COVID-19 Outcomes”, The Journal of clinical investigation, vol. 131, No. 13, e148635, 2021, pp. 1-12.
[cited by applicant]
Lin , et al., “Chitinase-3-like protein 1 as a predictor for the progression or regression of liver fibrosis”, Hepatoma Research, vol. 4, No. 8, Retrieved from the Internet: URL:https://oaepublishstorage.blob.core.windo…
[cited by applicant]
Lorenz , et al., “Steroid and Lipid Conjugates of siRNAs to Enhance Cellular Uptake and Gene Silencing in Liver cells”, Bioorganic & Medicinal Chemistry Letters, vol. 14, Issue 19, Oct. 4, 2004, pp. 4975-4977.
[cited by applicant]
Lu , et al., “Fab-scFv Fusion Protein: An Efficient Approach to Production of Bispecific Antibody Fragments”, Journal of Immunological Methods, vol. 267, No. 2, 2002, pp. 213-226.
[cited by applicant]
Ma, et al., “CHI3L1 Enhances Melanoma Lung Metastasis via Regulation of T Cell Co-Stimulators and CTLA-4/B7 Axis”, Frontiers in Immunology, vol. 13, Dec. 21, 2022, 16 pages.
[cited by applicant]
Ma , et al., “RIG-Like Helicase Regulation of Chitinase 3-Like 1 Axis and Pulmonary Metastasis”, Scientific Reports vol. 6, Article No. 26299, May 20, 2016, pp. 1-13.
[cited by applicant]
Ma, et al., “Role of Chitinase 3-Like-1 and Semaphorin 7a in Pulmonary Melanoma Metastasis”, Cancer Research, vol. 75, No. 3, Feb. 1, 2015, pp. 487-496.
[cited by applicant]
Mariuzza , et al., “The Structural Basis of Antigen-Antibody Recognition”, Annual review of Biophysics and Biophysical Chemistry, vol. 16, 1987, pp. 139-159.
[cited by applicant]
Merchant , et al., “Monovalent antibody design and mechanism of action of onartuzumab, a MET antagonist with anti-tumor activity as a therapeutic agent”, PNAS vol. 110, No. 32,, 2013, pp. E2987-E2996.
[cited by applicant]
Palekar , et al., “Clinical Model for Distinguishing Nonalcoholic Steatohepatitis from Simple Steatosis in Patients with Nonalcoholic Fatty Liver Disease”, Liver Int., vol. 26, No. 2, Mar. 2006, pp. 151-156.
[cited by applicant]
“International Search Report and Written Opinion received for PCT Patent Application No. PCT/US2018/012494, mailed on May 2, 2018”, 10 Pages.
[cited by applicant]
Pitt , et al., “Resistance Mechanisms to Immune-Checkpoint Blockade in Cancer: Tumor-Intrinsic and -Extrinsic Factors”, 2016, pp. 1255-1269.
[cited by applicant]
Rudikoff , et al., “Single amino acid substitution altering antigen-binding specificity”, PNAS, vol. 79, 1982, pp. 1979-1983.
[cited by applicant]
Schreier , et al., “Allotypic differences in murine u genes”, Nucleic Acids Research, vol. 14, No. 5, 1986, pp. 2381-2389.
[cited by applicant]
Sohn , et al., “The Chitinase-like Proteins Breast RegressionProtein-39 and YKL-40 Regulate Hyperoxia-inducedAcute Lung Injury”, American Journal of Respiratory and Critical Care Medicine, vol. 182, No. 7, Jun. 17, 2010…
[cited by applicant]
Yanqi, YE , et al., “Synergistic Transcutaneous Immunotherapy Enhances Antitumor Immune Responses through Delivery of Checkpoint Inhibitors”, ACS Nano, vol. 9, Retrieved from the Internet: URL:https://pubs.acs.org/doi/p…
[cited by applicant]
Steenbakkers , et al., “Localization of MHC Class II/Human Cartilage Glycoprotein-39 Complexes in Synovia of Rheumatoid Arthritis Patients Using Complex-Specific Monoclonal Antibodies”, The Journal of Immunology, vol. 1…
[cited by applicant]
Straub , et al., “Cassette mutagenesis of a potential substrate recognition region of cytochrome P450 2C2”, Journal of Biological Chemistry, vol. 268, No. 29, 1993, pp. 21997-22003.
[cited by applicant]
Sujith, Dassanayaka , et al., “Abstract 16699: Chitinase-3-like-1 Reduces Reparative Inflammatory Cells and Exacerbates Cardiac Dysfunction After Myocardial Infarction I Circulation”, Circulation, Retrieved from the Int…
[cited by applicant]
Tame, Jeremy R.H, “Scoring Functions: A View from the Bench”, Journal of Computer—Aided Molecular Desugn, vol. 13, 1999, pp. 99-108.
[cited by applicant]
Thom , et al., “Elevated Pretreatment Serum Concentration of YKL-40—An Independent Prognostic Biomarker for Poor Survival in Patients With Metastatic Nonsmall Cell Lung Cancer”, Cancer, vol. 116, No. 17 DOI: 10.1002/cnc…
[cited by applicant]
Tomar , et al., “Identification of SARS-CoV-2 E Channel Blockers from a Repurposed Drug Library”, Pharmaceuticals, vol. 14, No. 604, Jun. 23, 2021, 10 pages.
[cited by applicant]
Winkler , et al., “Changing The Antigen Binding Specificity by Single Point Mutations of an Anti-p24 {HIV-1) Antibody”, The Journal of Immunology; vol. 165; Issue 8, 2000, pp. 4505-4514.
[cited by applicant]
Xia, et al., “Inhibition of SARS-CoV-2 (previously 2019-nCoV) Infection by a Highly Potent Pan Coronavirus Fusion Inhibitor Targeting its Spike Protein that Harbors a High Capacity to Mediate Membrane Fusion”, Cell Rese…
[cited by applicant]
Yang, Zhou , et al., “Chitinase 3-Like 1 Suppresses Injury and Promotes Fibroproliferative Responses in Mammalian Lung Fibrosis”, Science Translational Medicine, vol. 6, No. 240, Retrieved from the Internet: URL:https:/…
[cited by applicant]
“Extended European Search Report received for EP Patent Application No. 20801507.3, mailed on Dec. 6, 2022”, 10 pages.
[cited by applicant]
Dahlén , et al., “Bispecific Antibodies in Cancer Immunotherapy”, Therapeutic Advances in Vaccines and Immunotherapy, vol. 6, No. 1, 2018, pp. 3-17.
[cited by applicant]
Faibish, M. , et al., “A YKL-40—Neutralizing Antibody Blocks Tumor Angiogenesis and Progression: A Potential Therapeutic Agent in Cancers”, Molecular Cancer Therapeutics, vol. 10, No. 5, Feb. 25, 2011, pp. 742-751.
[cited by applicant]
Hellmann , et al., “Nivolumab plus Ipilimumab in Advanced Non-Small-Cell Lung Cancer”, The New England Journal of Medicine, Sep. 28, 2019, 4 pages.
[cited by applicant]
Paz-Ares , et al., “Pembrolizumab plus Chemotherapy for Squamous Non-Small-Cell Lung Cancer”, The New England Journal of Medicine, vol. 379, 2018, pp. 2040-2051.
[cited by applicant]
Schoenfeld , et al., “Clinical and Molecular Correlates of PD-L1 Expression in Patients with Lung Adenocarcinomas”, Annals of Oncology, vol. 31, No. 5, 2020, pp. 599-608.
[cited by applicant]