HPK1 inhibitors and uses thereof
Provided herein is a compound represented by structural formula (I-0) or formula (II): or a pharmaceutically acceptable salt or a stereoisomer thereof useful for treating diseases (such as cancer) that are treatable by inhibiting HPK1 activity.
1 . A compound represented by structural formula (I-2):
or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
A is CR 2 or N;
(i) R is
wherein the bond connects with the pyrimidine ring;
each instance of R a is independently H, F, or Cl;
R a1 is independently H, C 1-4 alkyl, or C 1-4 hydroxyalkyl:
R a1 ′ is independently —(CHR aa ) k OH, —(CHR aa ) k CN, —(CHR aa ) k C(O)OR 11 , —(CHR aa ) k C(O)NR 11 R 12 , —(CHR aa ) k C(O)NR 11 OR 12 , —(CHR aa ) k C(O)NR 11 S(═O) 2 R 12 , —(CHR aa ) k S(═O) 2 R 11 , —(CHR aa ) k S(═O) 2 NR 11 R 12 , —(CHR aa ) k NR 11 S(═O) 2 R 12 , —(CHR aa ) k -5-6 membered heteroaryl, or —(CHR aa ) k P(═O)R 11 R 12 ;
R aa is independently H or C 1-3 alkyl optionally substituted with halogen;
R 1 is H, deuterium, halogen, OH, CN, NH 2 , NO 2 , C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)C 1-6 alkyl, C(O)OC 1-6 alkyl, NR 11 C(O)C 1-6 alkyl, phenyl, 5-6 membered heteroaryl, C 3-6 cycloalkyl, or 3-7 membered heterocyclyl, wherein the alkyl, alkenyl, alkynyl, alkoxy, phenyl, heteroaryl, cycloalkyl, or heterocyclyl represented by R 1 or in the group represented by R 1 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 alkoxy, C 1-4 haloalkyl, C 1-4 haloalkoxy, and NR 11 R 12 ; or
(ii) R and R 1 , together with the carbon atoms to which they are attached, form a ring represented below:
wherein the bonds connect with the pyrimidine ring;
each instance of R b is independently H, deuterium, halogen, OH, CN, NH 2 , NO 2 , COOH, C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)NR 11 OR 12 , C(O)NR 11 S(═O) 2 R 12 , C(O)C 1-6 alkyl, C(O)OR 11 , NR 11 C(O)R 12 , S(═O) 2 R 11 , S(═O) 2 NR 11 R 12 , NR 11 S(═O) 2 R 12 , P(═O)R 11 R 12 , C 3-6 cycloalkyl, 3-7 membered heterocyclyl, or 5-6 membered heteroaryl, wherein the alkyl, alkenyl, alkynyl, alkoxy, cycloalkyl, heterocyclyl, or heteroaryl represented by R b or in the group represented by R b is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)NR 11 OR 12 , C(O)NR 11 S(═O) 2 R 12 , C(O)OR 11 , NR 11 S(═O) 2 R 12 , P(═O)R 11 R 12 , S(═O) 2 R 11 , S(═O) 2 NR 11 R 12 , and 5-6 membered heteroaryl;
each instance of R c is independently phenyl, 5-6 membered monocyclic heterocyclyl having 1 to 3 heteroatoms selected from N and 0; 5-6 membered monocyclic heteroaryl having 1 to 3 heteroatoms selected from N and O; wherein the phenyl, heterocyclyl, or heteroaryl represented by R c is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, NR 11 R 12 , C(O)NR 11 R 12 , and P(O)di-C 1-6 alkyl;
each instance of R 2 is independently H, deuterium, halogen, OH, CN, NH 2 , NO 2 , C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 1-6 alkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)C 1-6 alkyl, C(O)OC 1-6 alkyl, NR 11 C(O)C 1-6 alkyl, P(═O)R 11 R 12 , S(═O) 2 R 11 , or S(═O) 2 NR 11 R 12 , wherein the alkyl, alkenyl, alkynyl, or alkoxy represented by R 2 or in the group represented by R 2 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, and NR 11 R 12 ;
R 3 is H, C 1-6 alkyl, C(O)C 1-6 alkyl, C 3-6 cycloalkyl, or 3-7 membered heterocyclyl, wherein the alkyl, cycloalkyl, or heterocyclyl represented by R 3 or in the group represented by R 3 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, C 3-6 cycloalkyl, 3-7 membered heterocyclyl, and NR 11 R 12 ;
each instance of R 11 and R 12 is independently H or C 1-4 alkyl;
m is 0, 1, 2, or 3; and
k is 0 or 1.
2 . The compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
R 1 is H, halogen, CN, C 1-6 alkyl, C 2-6 alkenyl, C 1-6 alkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)C 1-6 alkyl, C(O)OC 1-6 alkyl, NR 11 C(O)C 1-6 alkyl, wherein the alkyl, alkenyl, or alkoxy represented by R 1 or in the group represented by R 1 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 alkoxy, C 1-4 haloalkyl, C 1-4 haloalkoxy, and NR 11 R 12 .
3 . The compound of claim 2 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
R 1 is H, halogen, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 2-4 alkenyl, C 1-4 alkoxy, or C 1-4 haloalkoxy.
4 . The compound of claim 3 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
R 1 is H, F, Cl, CN, or CF 3 .
5 . The compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein R is
wherein the bond connects with the pyrimidine ring,
R a1 is independently H, C 1-4 alkyl, or C 1-4 hydroxyalkyl;
R a1 ′ is independently —(CHR aa ) k OH, —(CHR aa ) k CN, —(CHR aa )C(O)OR 11 , —(CHR aa ) k C(O)NR 11 R 12 , —(CHR aa ) k C(O)NR 11 OR 12 , —(CHR aa ) k C(O)NR 11 S(═O) 2 R 12 , —(CHR aa ) k S(═O) 2 R 11 , —(CHR aa ) k S(═O) 2 NR 11 R 12 , —(CHR aa ) k NR 11 S(═O) 2 R 12 , —(CHR aa ) k -5-6 membered heteroaryl, or —(CHR aa ) k P(═O)R 11 R 12 ;
R aa is independently H or C 1-3 alkyl optionally substituted with halogen;
R a is independently H, F, or Cl;
R 11 and R 12 are independently H or C 1-4 alkyl;
k is 0 or 1.
6 . The compound of claim 5 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
R a1 is independently H, CH 3 , or CH 2 OH;
R a1 ′ is independently —(CHR aa ) k OH, —(CHR aa ) k CN, —(CHR aa ) k C(O)OR 11 , —(CHR aa ) k C(O)NR 11 R 12 , —(CHR aa ) k C(O)NR 11 OR 12 , —(CHR aa ) k C(O)NR 11 S(═O) 2 R 12 , —(CHR aa ) k S(═O) 2 R 11 , —(CHR aa ) k S(═O) 2 NR 11 R 12 , —(CHR aa ) k NR 11 S(═O) 2 R 12 , —(CHR aa ) k -tetrazole, or —(CHR aa ) k P(═O)R 11 R 12 ;
R aa is independently H, CH 3 , or CF 3 ;
R 11 and R 12 are independently H or C 1-2 alkyl;
each instance of R a is independently H or F; and
k is 0 or 1.
7 . The compound of claim 6 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein R 1 is Cl.
8 . The compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
(i) R and R 1 , together with the carbon atoms to which they are attached, form a ring represented below:
(ii) R and R 1 , together with the carbon atoms to which they are attached, form a ring represented below:
wherein the bonds connect with the pyrimidine ring.
9 . The compound of claim 8 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
(i) each instance of R b is independently H, halogen, OH, CN, NH 2 , COOH, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 hydroxyalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, C 1-4 hydroxyalkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)C 1-4 alkyl, C(O)OC 1-4 alkyl, C(O)NR 11 OR 12 , S(═O) 2 R 11 , S(═O) 2 NR 11 R 12 , NR 11 (S═O) 2 R 12 , C(O)NR 11 S(═O) 2 R 12 , P(═O)R 11 R 12 , 5-6 membered heteroaryl, or NR 11 C(O)C 1-4 alkyl; and
each instance of R c is phenyl or pyridinyl, each of which is optionally substituted with one or two substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, NR 11 R 12 , C(O)NR 11 R 12 , and P(═O)di-C 1-6 alkyl;
(ii) each instance of R b is independently H, halogen, CN, COOH, C 1-2 alkyl, or C 1-2 haloalkyl;
each instance of R c is phenyl or pyridinyl, each of which is optionally substituted with one or two substituents independently selected from the group consisting of halogen, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, NR 11 R 12 , C(O)NR 11 R 12 , and P(═O)di-C 1-6 alkyl;
(iii) each instance of R b is independently H, CN, or COOH; and
each instance of R c is phenyl or pyridinyl, each of which is optionally substituted with one or two substituents independently selected from the group consisting of C 1-4 alkyl, C(O)N(CH 3 ) 2 , and P(═O)(CH 3 ) 2 .
10 . The compound of claim 7 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
m is 0 or 1; and/or
each instance of R 2 is H, halogen, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy; and
R 3 is H, C 1-6 alkyl, C 1-6 hydroxyalkyl, or COCH 2 NR 11 R 12 .
11 . The compound of claim 10 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein each instance of R 2 is H, F, Cl, or OCH 3 ; and R 3 is H or C 1-4 alkyl.
12 . A pharmaceutical composition comprising a therapeutically effective amount of the compound of claim 1 or a pharmaceutically acceptable salt or a stereoisomer thereof, and a pharmaceutically acceptable carrier.
13 . A combination comprising a therapeutically effective amount of the compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, and one or more therapeutically active co-agents.
14 . The compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein each instance of R 2 is independently H, halogen, OH, CN, NH 2 , NO 2 , C 1-4 alkyl, C 1-4 alkoxy, NR 11 R 12 , C(O)NR 11 R 12 , C(O)C 1-4 alkyl, C(O)OC 1-4 alkyl, NR 11 C(O)C 1-4 alkyl, P(═O)R 11 R 12 , S(═O) 2 R 11 , or S(═O) 2 NR 11 R 12 , wherein the alkyl or alkoxy represented by R 2 or in the group represented by R 2 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, and NR 11 R 12 .
15 . The compound of claim 1 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein R 3 is H, C 1-6 alkyl, or C(O)C 1-6 alkyl, wherein the alkyl represented by R 3 or in the group represented by R 3 is optionally substituted with one to three substituents independently selected from the group consisting of halogen, OH, CN, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 alkoxy, C 1-4 haloalkoxy, and NR 11 R 12 .
16 . The compound of claim 11 , or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein
R a1 is independently H, CH 3 , or CH 2 OH;
R a1 ′ is —CH 2 COOH; and
each instance of R a is independently H or F.
17 . A compound, or a pharmaceutically acceptable salt or a stereoisomer thereof, wherein the compound is
Exam-
ple
No.
Structure
36
37
43
44
45
38
39
47
46
111
40
41
33
32
95
96
87
115
88
121
81
99
120
117
118
119
116
97
122
101
102
100
127
123
103
128
124
98
110
163
109
112
105
104
126
125
172
171
166
145
149
164
150
151
152
153
154
160
157
155
158
156
165
18 . A compound, or a pharmaceutically acceptable salt, wherein the compound is
19 . A stereoisomer of a compound, wherein the compound is