IP Library Granted Patent US 11,958,873
Granted Patent B2
US 11,958,873 · App. 17/644,969 · Granted Apr 16, 2024

Proteasome activity enhancing compounds

Inventors: Matthew Cullen (Braintree, MA); Sheila Hauck (Lincoln, MA); Bolin Geng (Andover, MA); Megan Foley (Cambridge, MA); Cecilia M. Bastos (S. Grafton, MA); Benito Munoz (Newtonville, MA); Markus Haeberlein (Wellesley, MA); Bradley Tait (North Andover, MA)
Assignee: Kineta, Inc.
C07F7/1804C07B59/002C07D209/12C07D209/14C07D401/06C07D401/14C07D403/06C07D417/14C07D471/04C07D519/00C07B2200/05
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Quick Facts
Patent No.
US 11,958,873
App. No.
17/644,969
Granted
Apr 16, 2024
Kind
B2
Abstract

The present invention is directed to compounds having the Formula (I), (II), (III), (IV), and (V), compositions thereof, and methods for the treatment of a condition associated with a dysfunction in proteostasis.

Claims (77)

1. A compound having a structure of Formula (II), or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof:

wherein:

Q 1 is C(R a ) or nitrogen;

Q 2 is selected from the group consisting of C(R 3 ) and N;

Q 6 and Q 7 are each CH;

R 1 , R 2 , R 3b , R 3e , R 3g , and R g are each independently selected from the group consisting of hydrogen and optionally substituted C 1 -C 10 alkyl;

R 3 is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted aryl, halo, OR c , N 3 , NR d R d , C(O)OR c , NO 2 , CN, C(O)R c , C(O)C(O)R c , C(O)NR d R d , NR d C(O)R c , NR d S(O) n R c , N(R d )(COOR c ), NR d C(O)C(O)R c , NR d C(O)NR d R d , NR d S(O) n NR d R d , NR d S(O) n R c , S(O) n R c , S(O) n NR d R d , OC(O)OR c , (C═NR d )R c , OC(O)R c , optionally substituted heterocyclic and optionally substituted heteroaryl;

R 3c is selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted aryl, halo, N 3 , OR c , NR d R d , C(O)OR c , NO 2 , CN, C(O)R c , C(O)C(O)R c , C(O)NR d R d , NR d C(O)R c , NR d S(O) n R c , N(R d )(COOR c ), NR d C(O)C(O)R c , NR d C(O)NR d R d , NR d S(O) n NR d R d , NR d S(O) n R c , S(O) n R c , S(O) n NR d R d , OC(O)OR c , (C═NR d )R c , OC(O)R c , optionally substituted heterocyclic, and optionally substituted heteroaryl;

R 3f is halo or CN;

Z is selected from the group consisting of NR b R b , optionally substituted aryl, optionally substituted heterocyclic, optionally substituted heteroaryl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, and OR c ;

each R a is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted aryl, halo, N 3 , OR c , NR d R d , C(O)OR C , NO 2 , CN, C(O)R c , C(O)C(O)R C , C(O)NR d R d , NR d C(O)R C , NR d S(O) n R c , N(R d )(COOR c ), NR d C(O)C(O)R c , NR d C(O)NR d R d , NR d S(O) n NR d R d , NR d S(O) n R c , S(O) n R c , S(O) n NR d R d , OC(O)OR c , (C═NR d )R c , OC(O)R c , optionally substituted heterocyclic, and optionally substituted heteroaryl;

each R b is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 1 -C 10 alkoxy, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted heterocyclic, optionally substituted aryl, and optionally substituted heteroaryl;

each R c is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted heterocyclic, optionally substituted aryl, and optionally substituted heteroaryl;

each R d is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 1 -C 10 alkoxy, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted heterocyclic, optionally substituted aryl, and optionally substituted heteroaryl; or two geminal R d groups are taken together with the nitrogen atom to which they are attached to form an optionally substituted heterocyclic or an optionally substituted heteroaryl;

each R e is independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted heterocyclic, optionally substituted aryl and optionally substituted heteroaryl; and

each n is independently 0, 1 or 2.

2. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 1 is C(R a ) and R a is selected from the group consisting of hydrogen and optionally substituted C 1 -C 10 alkyl.

3. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 1 is C(R a ) and R a is selected from the group consisting of hydrogen and methyl.

4. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 2 is CH.

5. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 2 is N.

6. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 1 , R 2 , R 3b , R 3e , R 3g , and R g are each hydrogen.

7. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3c is optionally substituted C 1 -C 10 alkyl.

8. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3c is methyl.

9. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3c is C 1 -C 10 alkyl substituted with C(O)OR c or OC(O)R c .

10. The compound of claim 9 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R c is hydrogen or C 1 -C 10 alkyl.

11. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3c is C 1 -C 10 alkyl substituted with C(O)NR d R d .

12. The compound of claim 11 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein each R d is independently hydrogen or C 1 -C 10 alkyl.

13. The compound of claim 11 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein two geminal R d groups are taken together with the nitrogen atom to which they are attached to form an optionally substituted heterocyclic.

14. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3f is halo.

15. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3f is CN.

16. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is selected from the group consisting of heterocycloalkyl, heterocycloalkenyl, heterobicycloalkyl, heterobicycloalkenyl, heteropolycycloalkyl, and heteropolycycloalkenyl.

17. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is N-heterocyclic.

18. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is selected from the group consisting of optionally substituted pyrrolidin-1-yl, optionally substituted piperidin-1-yl, optionally substituted piperazin-1-yl, and optionally substituted morpholin-1-yl.

19. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is optionally substituted piperazin-1-yl.

20. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein:

Z is

wherein:

G is absent, C(R n ), O, or S; and

each R m and R n are each independently selected from the group consisting of hydrogen, optionally substituted C 1 -C 10 alkyl, optionally substituted C 2 -C 10 alkenyl, optionally substituted C 2 -C 10 alkynyl, optionally substituted C 3 -C 12 cycloalkyl, optionally substituted C 3 -C 12 cycloalkenyl, optionally substituted aryl, halo, N 3 , OR c , NR d R d , C(O)OR c , NO 2 , CN, C(O)R c , C(O)C(O)R c , C(O)NR d R d , NR d C(O)R c , NR d S(O) n R c , N(R d )(COOR c ), NR d C(O)C(O)R c , NR d C(O)NR d R d , NR d S(O) n NR d R d , NR d S(O) n R c , S(O) n R c , S(O) n NR d R d , OC(O)OR c , (C═NR d )R c , OC(O)R c , optionally substituted heterocyclic, and optionally substituted heteroaryl.

21. The compound of claim 20 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein:

each R m is hydrogen;

G is C(R n );

R a is OR c ; and

R e is methyl.

22. The compound of claim 20 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein:

each R m is hydrogen; and

G is O.

23. The compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein:

Q 1 is C—CH 3 ;

Q 2 is N or CH;

R 1 , R 2 , R 3b , R 3e , R 3g , and R g are each hydrogen;

R 3c is methyl, optionally substituted with C(O)NR d R d ;

R 3f is CN; and

Z is selected from the group consisting of optionally substituted piperidin-1-yl, optionally substituted piperazin-1-yl, and optionally substituted morpholin-1-yl.

24. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 2 is N.

25. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Q 2 is CH.

26. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3 , is methyl.

27. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3 , is methyl substituted with C(O)NR d R d and one R d is hydrogen and the other R d is methyl.

28. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein R 3c is methyl substituted with C(O)NR d R d and two geminal R d groups are taken together with the nitrogen atom to which they are attached to form an optionally substituted heterocyclic.

29. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is

and further wherein:

each R m is hydrogen; and

G is O.

30. The compound of claim 23 , or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein Z is

and further wherein:

each R m is hydrogen;

G is C( Rn ) 2 ;

each R n is independently hydrogen or O Rc ; and

R, is selected from the group consisting of hydrogen and optionally substituted C 1 -C 10 alkyl.

31. A compound, or a pharmaceutically acceptable salt, solvate, clathrate, or prodrug thereof, wherein the compound is selected from the group consisting of:

32. A pharmaceutical composition comprising a pharmaceutically acceptable carrier or excipient and a compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate or prodrug thereof.

33. A pharmaceutical composition comprising:

a pharmaceutically acceptable carrier or excipient;

an agent selected from the group consisting of a proteostasis regulator and a pharmacologic chaperone; and

a compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate or prodrug thereof.

34. A method of treating a patient suffering from a condition associated with a dysfunction in proteostasis comprising administering to said patient an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate or prodrug thereof.

35. A method of alleviating the symptoms of cancer selected from the group consisting of breast cancer, colon cancer, pancreatic cancer, prostate cancer, lung cancer, ovarian cancer, cervical cancer, multiple myeloma, basal cell carcinoma, neuroblastoma, hematologic cancer, rhabdomyosarcoma, liver cancer, skin cancer, leukemia, basal cell carcinoma, bladder cancer, endometrial cancer, glioma, lymphoma, and gastrointestinal cancer in a subject in need thereof comprising administering to said subject an effective amount of a compound of claim 1 , or a pharmaceutically acceptable salt, solvate, clathrate or prodrug thereof.

Assignments (3)
CHANGE OF NAME Recorded Dec 8, 2023
From: PROTEOSTASIS THERAPEUTICS, INC.
To: YUMANITY THERAPEUTICS, INC.
Reel/Frame 065841/0165 →
CHANGE OF NAME Recorded Dec 8, 2023
From: YUMANITY THERAPEUTICS, INC.
To: KINETA, INC.
Reel/Frame 065841/0300 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 16, 2022
From: CULLEN, MATTHEW; HAUCK, SHEILA; GENG, BOLIN; FOLEY, MEGAN; BASTOS, CECILIA M.; MUNOZ, BENITO; HAEBERLEIN, MARKUS; TAIT, BRADLEY
To: PROTEOSTASIS THERAPEUTICS, INC.
Reel/Frame 059286/0710 →
Continuity (7)
Continuation 16902019 · Jun 15, 2020
Continuation 15830261 · Dec 4, 2017
Continuation 15153379 · May 12, 2016
Continuation PCTUS2014065204 · Nov 12, 2014
Provisional Application 61903330 · Nov 12, 2013
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