US 5422241A
· Goldrick et al.
· 1995
[cited by applicant]
US 5693517A
· Gelfand et al.
· 1997
[cited by applicant]
US 5705345A
· Lundin et al.
· 1998
[cited by applicant]
US 5766890A
· Kacian et al.
· 1998
[cited by applicant]
US 5846701A
· Kacian et al.
· 1998
[cited by applicant]
US 5871975A
· Kacian et al.
· 1999
[cited by applicant]
US 6204375B1
· Lader
· 2001
[cited by applicant]
US 6777210B1
· Pasloske et al.
· 2004
[cited by applicant]
US 7112423B2
· Van Ness et al.
· 2006
[cited by applicant]
US 7888006B2
· Lenz
· 2011
[cited by applicant]
US 8008010B1
· Kuersten
· 2011
[cited by applicant]
US 8268605B2
· Sorge et al.
· 2012
[cited by applicant]
US 8338094B2
· Gong et al.
· 2012
[cited by applicant]
US 8435741B2
· Miyoshi et al.
· 2013
[cited by applicant]
US 8551697B1
· Bashkirov et al.
· 2013
[cited by applicant]
US 8921043B2
· Gardner
· 2014
[cited by applicant]
US 9562263B2
· Maples et al.
· 2017
[cited by applicant]
US 9562264B2
· Maples et al.
· 2017
[cited by applicant]
US 9617586B2
· Maples et al.
· 2017
[cited by applicant]
US 9617587B1
· Miller
· 2017
[cited by examiner]
US 9689031B2
· Maples et al.
· 2017
[cited by applicant]
US 9896723B2
· Hicke et al.
· 2018
[cited by applicant]
US 20050059000A1
· Sagawa et al.
· 2005
[cited by applicant]
US 20050089918A1
· Horton
· 2005
[cited by applicant]
US 20080128298A1
· Bornarth et al.
· 2008
[cited by applicant]
US 20080182312A1
· Pack et al.
· 2008
[cited by applicant]
US 20090155856A1
· Miyoshi et al.
· 2009
[cited by applicant]
US 20090162856A1
· Miyoshi
· 2009
[cited by examiner]
US 20100184154A1
· Miyoshi et al.
· 2010
[cited by applicant]
US 20110114878A1
· Jia
· 2011
[cited by applicant]
US 20110256592A1
· Beckers et al.
· 2011
[cited by applicant]
US 20120244599A1
· Teng et al.
· 2012
[cited by applicant]
US 20130244286A1
· Rashtchian et al.
· 2013
[cited by applicant]
US 20140322761A1
· Nakamura et al.
· 2014
[cited by applicant]
US 20150064698A1
· Matsuno
· 2015
[cited by applicant]
US 20180023130A1
· Maples et al.
· 2018
[cited by applicant]
US 20240209426A1
· Miller
· 2024
[cited by examiner]
CN 101835903A
· 2010
[cited by applicant]
CN 105008534A
· 2015
[cited by applicant]
CN 106867998
· 2017
[cited by applicant]
EP 2181196
· 2013
[cited by applicant]
EP 2657350
· 2013
[cited by applicant]
EP 2660333
· 2013
[cited by applicant]
EP 2847330B1
· 2018
[cited by applicant]
WO WO2002072772
· 2002
[cited by applicant]
WO WO2003072805
· 2003
[cited by applicant]
WO WO2005093065
· 2005
[cited by applicant]
WO WO2005118853
· 2005
[cited by applicant]
WO WO2007096702
· 2007
[cited by applicant]
WO WO2008035205
· 2008
[cited by applicant]
WO WO2008119081
· 2008
[cited by applicant]
WO WO2009012246
· 2009
[cited by applicant]
WO WO2010015835
· 2010
[cited by applicant]
WO WO2010135310
· 2010
[cited by applicant]
WO WO2010141940
· 2010
[cited by applicant]
WO WO2011038197
· 2011
[cited by applicant]
WO WO2011098085
· 2011
[cited by applicant]
WO WO2012020015
· 2012
[cited by applicant]
WO WO2012138989
· 2012
[cited by applicant]
WO WO2013185081
· 2013
[cited by applicant]
WO WO2014003583
· 2014
[cited by applicant]
WO WO2014076286
· 2014
[cited by applicant]
WO WO2016106129
· 2016
[cited by applicant]
WO WO2017074688
· 2017
[cited by applicant]
WO WO2017075586
· 2017
[cited by applicant]
WO WO2017143873
· 2017
[cited by applicant]
WO WO2017152122
· 2017
[cited by applicant]
WO WO2017176404
· 2017
[cited by applicant]
WO WO2017214561
· 2017
[cited by applicant]
WO WO2018140953
· 2018
[cited by applicant]
WO WO2019163064
· 2019
[cited by applicant]
WO WO2021021522
· 2021
[cited by applicant]
WO WO2021204701
· 2021
[cited by applicant]
WO WO2022198086
· 2022
[cited by applicant]
WO WO2023150708
· 2023
[cited by applicant]
WO WO2023150710
· 2023
[cited by applicant]
Hogrefe et al., “DNA Polymerases from Hyperthermophiles,” Methods in Enzymology, vol. 334, pp. 91-116. (Year: 2001).
[cited by examiner]
Goel et al., “Molecular beacon: a multitask probe”, Journal of Applied Microbiology, vol. 99, pp. 435-442. (Year: 2005).
[cited by examiner]
NEB FAQ, “Does Bst DNA polymerase have reverse transcriptase activity?” [retrieved on-line, retrieved from Does Bst DNA polymerase have reverse transcriptase activity?; retrieval date 2024 (Year: 2024).
[cited by examiner]
Hoser et al., “Strand Invasion Based Amplification (SIBA(R)): A Novel Isothermal DNA Amplification Technology Demonstrating High Specificity and Sensitivity for a Single Molecule of Target Analyte,” PLoS One, November, …
[cited by examiner]
U.S. Appl. No. 63/163,399, filed Mar. 19, 2021, Zhang et al.
[cited by applicant]
U.S. Appl. No. 63/307,085, filed Feb. 5, 2022, Zhang et al.
[cited by applicant]
U.S. Appl. No. 63/307,092, filed Feb. 5, 2022, Petisce.
[cited by applicant]
Chemometec, “910-0010 Lysis 1—Acidic Lysis buffer 100 ml Contents,” Available at: “https://chemometec.com/wp-content/uploads/2021/01/Package-Insert-Lysis-1-910-0010.pdf”, Printed in 1 Page.
[cited by applicant]
Cooper, Christopher DO. “Archaeal DNA polymerases: new frontiers in DNA replication and repair.” Emerging topics in life sciences 2.4 (2018): 503-516.
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2023/061978 mailed on May 23, 2023, 16 pages.
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2023/061980 mailed on May 6, 2023, 11 pages.
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2023/062485 mailed on May 25, 2023, 10 pages.
[cited by applicant]
Johansson, Mary Katherine, and Ronald M. Cook. “Intramolecular dimers: a new design strategy for fluorescence-quenched probes.” Chemistry-A European Journal 9.15 (2003): 3466-3471.
[cited by applicant]
Johansson, Mary Katherine, et al. “Intramolecular dimers: a new strategy to fluorescence quenching in dual-labeled oligonucleotide probes.” Journal of the American Chemical Society 124.24 (2002): 6950-6956.
[cited by applicant]
Johansson, Mary Katherine. “Choosing reporter-quencher pairs for efficient quenching through formation of intramolecular dimers.” Fluorescent energy transfer nucleic acid probes: designs and protocols (2006): 17-29.
[cited by applicant]
Killelea, Tom, et al. “PCR performance of a thermostable heterodimeric archaeal DNA polymerase.” Frontiers in microbiology 5 (2014): 195.
[cited by applicant]
Leggate, Johanna, and Burton W. Blais. “An internal amplification control system based on primer-dimer formation for PCR product detection by DNA hybridization.” Journal of food protection 69.9 (2006): 2280-2284.
[cited by applicant]
Marras, Salvatore AE, Fred Russell Kramer, and Sanjay Tyagi. “Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes.” Nucleic acids research 30.21 (2002): e122-e…
[cited by applicant]
Ranasinghe, Rohan T., and Tom Brown. “Fluorescence based strategies for genetic analysis.” Chemical Communications 44 (2005): 5487-5502.
[cited by applicant]
Beaucage and Caruthers, “Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis,” Tetrahedron Letters 1981, 22(20), 1859-1862.
[cited by applicant]
Chang et al., “A thermally baffled device for highly stabilized convective PCR,” Biotechnol J. 2012, 7(5), 662-666.
[cited by applicant]
Corstjens et al., “Use of Up-Converting Phosphor Reporters in Lateral-Flow Assays to Detect Specific Nucleic Acid Sequences: A Rapid, Sensitive DNA Test to Identify Human Papillomavirus Type 16 Infection,” Clinical Chem…
[cited by applicant]
Crain and Mccloskey et al., “Applications of mass spectrometry to the characterization of oligonucleotides and nucleic acids,” Current Opinion in Biotechnology 1998, 9(1), 25-34.
[cited by applicant]
Examination Report dated Feb. 11, 2020 in European Patent Application No. 17711527.6.
[cited by applicant]
Examination Report dated Jul. 19, 2019 in European Patent Application No. 17711527.6.
[cited by applicant]
Examination Report dated Jul. 14, 2021 in European Patent Application No. 20182776.3.
[cited by applicant]
Extended European Search Report dated Oct. 16, 2020 in European Patent Application No. 20182776.3.
[cited by applicant]
Final Office Action dated Oct. 28, 2021 in U.S. Appl. No. 16/089,063.
[cited by applicant]
Greenough et al., “Characterization of Family D DNA polymerase from
[cited by applicant]
International Search Report and Written Opinion dated Jun. 6, 2017 in PCT Application No. PCT/US2017/020921.
[cited by applicant]
Kankia, “Self-dissociative primers for nucleic acid amplification and detection based on DNA quadruplexes with intrinsic fluorescence,” Analytical Biochemistry 2011, 409(1), 59-65.
[cited by applicant]
Krishnan et al., “PCR in a Rayleigh-Benard Convection Cell,” Science 2002, 298(5594), 793.
[cited by applicant]
Lenglet et al., “DNA-Destabilizing Agents as an Alternative Approach for Targeting DNA: Mechanisms of Action and Cellular Consequences,” J Nucleic Acids. 2010, Article ID 290935, 17 pp. doi:10.4061/2010/290935.
[cited by applicant]
Liu et al., “Polymerase Spiral Reaction (PSR): A novel isothermal nucleic acid amplification method,” Scientific Reports 2015, 5(12723), 1-8.
[cited by applicant]
Mahalanabis et al., “An integrated disposable device for DNA extraction and helicase dependent amplification,” Biomed Microdevices 2010, 12(2), 353-359.
[cited by applicant]
Moore, “Alere i Isothermal Amplification,” presented at Seventh National Molecular Microbiology Diagnostics Users Group Fall Meeting and Annual Conference, Oct. 11, 2013, http://www.nmgroup.ca/Document/2013/2013_07.pdf.
[cited by applicant]
Motre et al., “Improving isothermal DNA amplification speed for the rapid detection of
[cited by applicant]
Needham-Vandevanter et al., “Characterization of an adduct between CC-1065 and a defined oligodeoxynucleotide duplex.,” Nucleic Acids Res. 1984, 12(15), 6159-6168.
[cited by applicant]
Non-Final Office Action dated Sep. 26, 2016 in U.S. Appl. No. 15/090,405.
[cited by applicant]
Non-Final Office Action dated Feb. 22, 2021 in U.S. Appl. No. 15/930,958.
[cited by applicant]
Non-Final Office Action dated Jun. 9, 2021 in U.S. Appl. No. 16/089,063.
[cited by applicant]
Notice of Reasons for Rejection dated Mar. 6, 2020 in Japanese Patent Application No. 2019-503197.
[cited by applicant]
Notice of Allowance dated Dec. 2, 2016 in U.S. Appl. No. 15/090,405.
[cited by applicant]
Notice of Allowance dated Aug. 3, 2020 in Japanese Patent Application No. 2019-503197.
[cited by applicant]
Notice of Allowance dated May 19, 2021 in U.S. Appl. No. 15/930,958.
[cited by applicant]
Notice of Allowance dated Dec. 29, 2021 in U.S. Appl. No. 16/089,063.
[cited by applicant]
Office Action dated Jun. 17, 2021 in Japanese Patent Application No. 2020-092422.
[cited by applicant]
Office Action dated Jan. 11, 2022 in Japanese Patent Application No. 2020-092422.
[cited by applicant]
Pearson and Regnier, “High-performance anion-exchange chromatography of oligonucleotides,” Journal of Chromatography A 1983, 255(21), 137-149.
[cited by applicant]
Piepenburg et al., “DNA Detection Using Recombination Proteins,” PLoS Biol 2006, 4(7), e204.
[cited by applicant]
Singh et al., “Effect of Different Denaturing Agents on the Detectability of Specific DNA Sequences of Various Base Compositions by in Situ Hybridisation,” Chromosoma. 1977;60(4):377-389.
[cited by applicant]
Southworth et al., “Cloning of thermostable DNA polymerases from hyperthermophilic marine Archaea with emphasis on
[cited by applicant]
Tan et al., “Specific versus Nonspecific Isothermal DNA Amplification through Thermophilic Polymerase and Nicking Enzyme Activities,” Biochemistry 2008, 47(38), 9987-9999.
[cited by applicant]
Tong et al. “Multiple strategies to improve sensitivity, speed and robustness of isothermal nucleic acid amplification for rapid pathogen detection,” BMC Biotechnol. 2011, 11(50), 7 pp.
[cited by applicant]
Tsai et al., “Development of TaqMan Probe-Based Insulated Isothermal PCR (iiPCR) for Sensitive and Specific On-Site Pathogen Detection,” PLoS One. 2012, 7(9), e45278.
[cited by applicant]
Tsai et al., “Validation of a Commercial Insulated Isothermal PCR-based POCKIT Test for Rapid and Easy Detection of White Spot Syndrome Virus Infection in
[cited by applicant]
Tyagi et al., “Molecular Beacons: Probes that Fluoresce upon Hybridization,” Nature Biotechnology 1996, 14, 303-308.
[cited by applicant]
Vincent et al., “Helicase-dependent isothermal DNA amplification,” EMBO Rep. 2004, 5(8), 795-800.
[cited by applicant]
Wolfe et al., “A genotyping strategy based on incorporation and cleavage of chemically modified nucleotides,” Proc Natl Acad Sci U S A 2002, 99(17), 11073-11078.
[cited by applicant]
Xu et al., “Cross Priming Amplification: Mechanism and Optimization for Isothermal DNA Amplification,” Sci Rep. 2012, 2(246), 1-7.
[cited by applicant]
Zhao et al., “Isothermal Amplification of Nucleic Acids,” Chem. Rev. 2015, 115(22), 12491-12545.
[cited by applicant]
Anfinsen, Christian B., et al. “The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain.” Proceedings of the National Academy of Sciences 47.9 (1961): 1309-1314.
[cited by applicant]
Bender, Andrew T., et al. “Enzymatic and chemical-based methods to inactivate endogenous blood ribonucleases for nucleic acid diagnostics.” The Journal of Molecular Diagnostics 22.8 (2020): 1030-1040.
[cited by applicant]
Decision of Final Rejection Aug. 31, 2022 in Chinese Patent Application No. 2017800331237.
[cited by applicant]
Decision of Rejection Feb. 5, 2024 in Japanese Patent Application No. 2022-077421.
[cited by applicant]
Examination Report dated Feb. 6, 2024 in Canadian Patent Application No. 3,018,202.
[cited by applicant]
Examination Report dated Jul. 13, 2022 in European Patent Application No. 22165594.7.
[cited by applicant]
Extended European Search Report dated Jun. 17, 2020 in European Patent Application No. 24156601.7.
[cited by applicant]
International Search Report and Written Opinion for Application No. PCT/US2022/021015 mailed on Jun. 8, 2022, 9 pages.
[cited by applicant]
Myhrvold, Cameron, et al. “Field-deployable viral diagnostics using CRISPR-Cas13.” Science 360.6387 (2018): 444-448.
[cited by applicant]
Notice of Allowance dated Jan. 9, 2024 in Japanese Patent Application 2020-092422.
[cited by applicant]
Notice of Allowance dated Sep. 29, 2023 in European Patent Application No. 22165594.7.
[cited by applicant]
Office Action dated Dec. 6, 2021 in Chinese Patent Application No. 2017800331237.
[cited by applicant]
Office Action dated Jun. 6, 2023 in Japanese Patent Application No. 2022-077421.
[cited by applicant]
Office Action dated May 17, 2022 in Chinese Patent Application No. 2017800331237.
[cited by applicant]
Yamaguchi, Hiroshi, and Masaya Miyazaki. “Refolding techniques for recovering biologically active recombinant proteins from inclusion bodies.” Biomolecules 4.1 (2014): 235-251.
[cited by applicant]
Non-Final Office Action dated May 12, 2023 in U.S. Appl. No. 17/402,358.
[cited by applicant]
Notice of Allowance Dated Apr. 1, 2021 in European Patent Application No. 17711527.6.
[cited by applicant]
Notice of Allowance Dated Nov. 17, 2022 in European Patent Application 20182776.3.
[cited by applicant]
Notice of Allowance Dated Jan. 31, 2023 in Australian Patent Application No. 2017247133.
[cited by applicant]
Notice of Allowance Dated Oct. 12, 2023 in U.S. Appl. No. 17/402,358.
[cited by applicant]
Office Action dated Jan. 6, 2023 in Australian Patent Application No. 2017247133.
[cited by applicant]
Office Action dated Jan. 11, 2023 in Canadian Patent Application No. 3,018,202.
[cited by applicant]
Examination Report dated Nov. 26, 2024 in Australian Patent Application No. 2023201140.
[cited by applicant]
Notice of Allowance dated Sep. 9, 2024 in Japanese Patent Application No. 2022-077421.
[cited by applicant]