IP Library Granted Patent US 12,098,139
Granted Patent B2
US 12,098,139 · App. 17/750,165 · Granted Sep 24, 2024

Chemokine receptor modulators and uses thereof

Inventors: Jeffrey J. Jackson (San Bruno, CA); John Michael Ketcham (San Mateo, CA); Akinori Okano (San Mateo, CA); Maureen Kay Reilly (San Francisco, CA); Omar Robles-Resendiz (Redwood City, CA); Jacob Bradley Schwarz (San Ramon, CA); Parcharee Tivitmahaisoon (San Francisco, CA); David Juergen Wustrow (Los Gatos, CA); Ashkaan Younai (San Francisco, CA); Mikhail Zibinsky (Redwood City, CA)
Assignee: RAPT Therapeutics, Inc.
C07D401/14A61P11/06A61P17/00A61P29/00A61P35/00C07D495/04
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Quick Facts
Patent No.
US 12,098,139
App. No.
17/750,165
Granted
Sep 24, 2024
Kind
B2
Abstract

Disclosed herein, inter alia, are compounds and methods of use thereof for the modulation of certain chemokine receptor activity.

Claims (80)

1. A method of treating or pain in a subject, comprising administering to said subject a therapeutically effective amount of a compound of structural Formula (I):

or a pharmaceutically acceptable salt thereof, wherein:

X 1 is CR 8 or N;

X 2 is CR 9 or N;

X 3 is CR 10 or N;

n1, n2, n3, n4, n5, n6, n7, n8, n9, n10, and n44 are independently an integer from 0 to 4;

m1, m2, m3, m4, m5, m6, m7, m8, m9, m10, v1, v2, v3, v4, v5, v6, v7, v8, v9, v10, and v44 are independently 1 or 2;

z1 is an integer from 0 to 5;

z2 is an integer from 0 to 4;

z3 is an integer from 0 to 11;

z4 is an integer from 0 to 2;

L′ is a bond, —O—, —S—, —NR 7.2B —, —C(O)—, —C(O)O—, —S(O)—, —S(O) 2 —, substituted or unsubstituted alkylene, substituted or unsubstituted heteroalkylene, substituted or unsubstituted cycloalkylene, substituted or unsubstituted heterocycloalkylene, substituted or unsubstituted arylene, or substituted or unsubstituted heteroarylene;

R 1 is hydrogen, halogen, —CX 1.1 3 , —CHX 1.1 2 , —CH 2 X 1.1 , —CN, —N 3 , —SO n1 R 1A , —SO v1 NR 1B R 1C , —NHNR 1B R 1C , —ONR 1B R 1C , —NHC(O)NHNR 1B R 1C , —NHC(O)NR 1B R 1C , —N(O) m1 , —NR 1B R 1C , —C(O)R 1D , —C(O)OR 1D , —C(O)NR 1B R 1C , —OR 1A , —NR 1B SO 2 R 1A , —NR 1B C(O)R 1D , —NR 1B C(O)OR 1D , —NR 1B OR 1D , —OCX 1.1 3 , —OCHX 1.1 2 , —OCH 2 X 1.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 2 is hydrogen, halogen, —CX 2.1 3 , —CHX 2.1 2 , —CH 2 X 2.1 , —CN, —N 3 , —SO n2 R 2A , —SO v2 NR 2B R 2C , —NHNR 2B R 2C , —ONR 2B R 2C , —NHC(O)NHNR 2B R 2C , —NHC(O)NR 2B R 2C —N(O) m2 , —NR 2B R 2C , —C(O)R 2D , —C(O)OR 2D , —C(O)NR 2B R 2C , —OR 2A , —NR 2B SO 2 R 2A , —NR 2B C(O)R 2D , —NR 2B C(O)OR 2D , —NR 2B OR 2D , OCX 2.1 3 , —OCHX 2.1 2 , —OCH 2 X 2.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 3 is independently halogen, —CX 3.1 3 , —CHX 3.1 2 , —CH 2 X 3.1 , —CN, —N 3 , —SO n3 R 3A , —SO v3 NR 3B R 3C , —NHNR 3B R 3C , —ONR 3B R 3C , —NHC(O)NHNR 3B R 3C , —NHC(O)NR 3B R 3C , —N(O) m3 , —NR 3B R 3C , —C(O)R 3D , —C(O)OR 3D , —C(O)NR 3B R 3C , —OR 3A , —NR 3B SO 2 R 3A , —NR 3B C(O)R 3D , —NR 3B C(O)OR 3D , —NR 3B OR 3D , OCX 3.1 3 , —OCHX 3.1 2 , —OCH 2 X 3.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl;

R 4 is hydrogen, halogen, —CX 4.1 3 , —CHX 4.1 2 , —CH 2 X 4.1 , —CN, —N 3 , —SO n4 R 4A , —SO v4 NR 4B R 4C , —NHNR 4B R 4C , —ONR 4B R 4C , —NHC(O)NHNR 4B R 4C , —NHC(O)NR 4B R 4C —N(O) m4 , —NR 4B R 4C , —C(O)R 4D , —C(O)OR 4D , —C(O)NR 4B R 4C , —OR 4A , —NR 4B SO 2 R 4A , —NR 4B C(O)R 4D , —NR 4B C(O)OR 4D , —NR 4B OR 4D , —OCX 4.1 3 , —OCHX 4.1 2 , —OCH 2 X 4.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl, or when X 2 is CR 9 , then R 4 and R 9 may optionally be joined to form a substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 5 is independently halogen, oxo, —CX 5.1 3 , —CHX 5.1 2 , —CH 2 X 5.1 , —CN, —N 3 , —SO n5 R 5A , —SO v5 NR 5B R 5C , —NHNR 5B R 5C , —ONR 5B R 5C , —NHC(O)NHNR 5B R 5C , —NHC(O)NR 5B R 5C —N(O) m5 , —NR 5B R 5C , —C(O)R 5D , —C(O)OR 5D , —C(O)NR 5B R 5C , —OR 5A , —NR 5B SO 2 R 5A , —NR 5B C(O)R 5D , —NR 5B C(O)OR 5D , —NR 5B OR 5D , —OCX 5.1 3 , —OCHX 5.1 2 , —OCH 2 X 5.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl;

R 6 is independently halogen, oxo, —CX 6.1 3 , —CHX 6.1 2 , —CH 2 X 6.1 , —CN, —N 3 , —SO n6 R 6A , —SO v6 NR 6B R 6C , —NHNR 6B R 6C , —ONR 6B R 6C , —NHC(O)NHNR 6B R 6C , —NHC(O)NR 6B R 6C , —N(O) m6 , —NR 6B R 6C , —C(O)R 6D , —C(O)OR 6D , C(O)NR 6B R 6C , —OR 6A , —NR 6B SO 2 R 6A , —NR 6B C(O)R 6D , —NR 6B C(O)OR 6D , —NR 6B OR 6D , —OCX 6.1 3 , —OCHX 6.1 2 , —OCH 2 X 6.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl;

R 7 is hydrogen, halogen, —CX 7.1 3 , —CHX 7.1 2 , —CH 2 X 7.1 , —CN, —N 3 , —SO n7 R 7A , —SO v7 NR 7B R 7C , —NHNR 7B R 7C , —ONR 7B R 7C , —NHC(O)NHNR 7B R 7C , —NHC(O)NR 7B R 7C —N(O) m7 , —NR 7B R 7C , —C(O)R 7D , —C(O)OR 7D , —C(O)NR 7B R 7C , —OR 7A , —NR 7B SO 2 R 7A , —NR 7B C(O)R 7D , —NR 7B C(O)OR 7D , —NR 7B OR 7D , —OCX 7.1 3 , —OCHX 7.1 2 , —OCH 2 X 7.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl;

R 8 is hydrogen, halogen, —CX 8.1 3 , —CHX 8.1 2 , —CH 2 X 8.1 , —CN, —N 3 , —SO n8 R 8A , —SO v8 NR 8B R 8C , —NHNR 8B R 8C , —ONR 8B R 8C , —NHC(O)NHNR 8B R 8C , —NHC(O)NR 8B R 8C , —N(O) m8 , —NR 8B R 8C , —C(O)R 8D , —C(O)OR 8D , —C(O)NR 8B R 8C , —OR 8A , —NR 8B SO 2 R 8A , —NR 8B C(O)R 8D , —NR 8B C(O)OR 8D , —NR 8B OR 8D , OCX 8.1 3 , —OCHX 8.1 2 , —OCH 2 X 8.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 9 is hydrogen, halogen, —CX 9.1 3 , —CHX 9.1 2 , —CH 2 X 9.1 , —CN, —N 3 , —SO n9 R 9A , —SO v9 NR 9B R 9C , —NHNR 9B R 9C , —ONR 9B R 9C , —NHC(O)NHNR 9B R 9C , —NHC(O)NR 9B R 9C , —N(O) m9 , —NR 9B R 9C , —C(O)R 9D , —C(O)OR 9D , —C(O)NR 9B R 9C , —OR 9A , —NR 9B SO 2 R 9A , —NR 9B C(O)R 9D , —NR 9B C(O)OR 9D , —NR 9B OR 9D , —OCX 9.1 3 , —OCHX 9.1 2 , —OCH 2 X 9.1 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl, or when X 2 is CR 9 , then R 4 and R 9 may optionally be joined to form a substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; or

when X 2 is CR 9 and X 3 is CR 10 , then R 9 and R 10 may optionally be joined to form a substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 10 is hydrogen, halogen, —CX 10.1 3 , —CHX 10.1 2 , —CH 2 X 10.1 , —CN, —N 3 , —SO n10 R 10A , —SO v10 NR 10B R 10C , —NHNR 10B R 10C , —ONR 10B R 10C , —NHC(O)NHNR 10B R 10C , —NHC(O)NR 10B R 10C , —N(O) m10 , —NR 10B R 10C , —C(O)R 10D , —C(O)OR 10D , —C(O)NR 10B R 10C —OR 10A , —NR 10B SO 2 R 10A , —NR 10B C(O)R 10D , —NR 10B C(O)OR 10D , —NR 10B OR 10D , —OCX 10.1 3 , —OCHX 10.1 2 , —OCH 2 X 10.1 ,substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; or

when X 2 is CR 9 and X 3 is CR 10 , then R 9 and R 10 may optionally be joined to form a substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 44 is hydrogen, —CX 44.1 3 , —CHX 44.1 2 , —CH 2 X 44.1 , —SO n44 R 44A , —SO v44 NR 44B R 44C , —C(O)R 44D , —C(O)OR 44D , —C(O)NR 44B R 44C , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl or substituted or unsubstituted heteroaryl;

R 1A , R 1B , R 1C , R 1D , R 2A , R 2B , R 2C , R 2D , R 3A , R 3B , R 3C , R 3D , R 4A , R 4B , R 4C , R 4D , R 5A , R 5B , R 5C , R 5D , R 6A , R 6B , R 6C , R 6D , R 7A , R 7B , R 7C , R 7D , R 7.2B , R 8A , R 8B , R 8C , R 8D , R 9A , R 9B , R 9C , R 9D , R 10A , R 10B , R 10C , R 10D , R 44A , R 44B , R 44C , and R 44D are independently hydrogen, halogen, —CF 3 , —CCl 3 , —CBr 3 , —Cl 3 , —COOH, —CONH 2 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;

R 1B , R 1C , R 2B , R 2C , R 3B , R 3C , R 4B , R 4C , R 5B , R 5C , R 6B , R 6C , R 7B , R 7C , R 8B , R 8C , R 9B , R 9C , R 10B , R 10C , R 44B , and R 44C substituents bonded to the same nitrogen atom may optionally be joined to form a substituted or unsubstituted heterocycloalkyl or substituted or unsubstituted heteroaryl; and

X 1.1 , X 2.1 , X 3.1 , X 4.1 , X 5.1 , X 6.1 , X 7.1 , X 8.1 , X 9.1 , X 10.1 , and X 44.1 are independently —Cl, —Br, —I or —F;

wherein at least one of X 1 , X 2 and X 3 is N.

2. The method of claim 1 , wherein the compound has structural formula (IIb):

or a pharmaceutically acceptable salt thereof, wherein:

X 2 is CR 9 ;

z4 is 1;

L′ is a bond, —O—, —S—, —NR 7.2B —, —C(O)—, —C(O)O—, —S(O)—, —S(O) 2 —, substituted or unsubstituted alkylene, or substituted or unsubstituted cycloalkylene;

R 3.2 is hydrogen, halogen or —SO n3.2 R 3.2A ;

R 3.3 is hydrogen, halogen, or —SO n3.2 R 3.3A ,

R 44 is hydrogen;

R 3.2 A, R 3.3 A, and R 7.2 B are independently hydrogen, halogen, —CF 3 , —CCl 3 , —CBr 3 , —Cl 3 , COOH, —CONH 2 , substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl; and

n3.2 and n3.3 are independently an integer from 0 to 4.

3. The method of claim 1 , wherein the compound has the structure:

or a pharmaceutically acceptable salt thereof.

4. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

5. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

6. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

7. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

8. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

9. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

10. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

11. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

12. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

13. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

14. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

15. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

16. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

17. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

18. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

19. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

20. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

21. The method of claim 1 , wherein the compound has formula:

or a pharmaceutically acceptable salt thereof.

22. The method of claim 1 , wherein the compound is administered orally.

23. The method of claim 1 , said method comprising administering to the subject a pharmaceutical composition comprising the compound of claim 1 and a pharmaceutically acceptable excipient.

24. The method of claim 23 , wherein the pharmaceutical composition is administered orally.

Assignments (2)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 22, 2024
From: JACKSON, JEFFREY J.; KETCHAM, JOHN MICHAEL; OKANO, AKINORI; REILLY, MAUREEN KAY; ROBLES-RESENDIZ, OMAR; SCHWARZ, JACOB BRADLEY; TIVITMAHAISOON, PARCHAREE; WUSTROW, DAVID JUERGEN; YOUNAI, ASHKAAN; ZIBINSKY, MIKHAIL
To: FLX BIO, INC.
Reel/Frame 067495/0689 →
CHANGE OF NAME Recorded May 22, 2024
From: FLX BIO, INC.
To: RAPT THERAPEUTICS, INC.
Reel/Frame 067503/0715 →
Continuity (6)
Continuation 16859896 · Apr 27, 2020
Division 16256987 · Jan 24, 2019
Provisional Application 62784161 · Dec 21, 2018
Provisional Application 62772027 · Nov 27, 2018
Provisional Application 62622771 · Jan 26, 2018
Related Publication 20230139321A1 · May 4, 2023