SIRPα-targeting antibody or antigen binding fragment thereof, and preparation and application thereof
Disclosed is a SIRPα-targeting antibody or an antigen-binding fragment thereof, comprising a light chain variable region and/or a heavy chain variable region. The antibody or the antigen-binding fragment thereof binds to human SIRPα-V1 and human SIRPα-V2, but weakly or does not bind to human SIRPβ and SIRPγ, does not bind to human T cells, and has the function of blocking the binding of SIRPα to CD47. Further disclosed are a bispecific antibody comprising same, a method for preparing the antibody or the antigen-binding fragment thereof and an application thereof. The unique properties of the disclosed antibody or the antigen-binding fragment thereof enable same to be more suitable for the development of drugs for an antibody or antigen-binding fragment against a human SIRPα target. As a candidate drug, same can be administered alone or in combination, providing a new or even better choice for the combined immunotherapy of tumors.
1 . An Sirpα-targeting antibody or an antigen-binding fragment thereof, comprising a light chain variable region and a heavy chain variable region, wherein the antibody or the antigen-binding fragment thereof binds to human Sirpα-V1 and human Sirpα-V2, but faintly binds to or does not bind to human Sirpβ and Sirpγ, and does not bind to human T cells, and has the function of blocking the binding of Sirpα to CD47; wherein faintly bind means that the EC50 in the binding experiment is 10 nM≤EC50<50 nM; does not bind means that the EC50 in the binding experiment is 50 nM≤EC50 or that the binding signal is undetectable;
the antibody or the antigen-binding fragment thereof also binds to one or more of Cyno Sirpα L932, L933, L936 and L937, but does not bind to Cyno Sirpα L938 and L939; wherein the amino acid sequence of the L932 has a NCBI sequence number of NP_001271679.1 and as shown in SEQ ID NO: 62, the amino acid sequence of the L933 has a NCBI sequence number of NP_001271679.2 and as shown in SEQ ID NO: 63, the amino acid sequence of the L936 is as shown in SEQ ID NO: 3, the amino acid sequence of the L937 is as shown in SEQ ID NO: 4, the amino acid sequence of the L938 is as shown in SEQ ID NO: 5, and the amino acid sequence of the L939 is as shown in SEQ ID NO: 6;
the light chain variable region comprises the following CDRs: VL CDR1 as shown in the amino acid sequence of SEQ ID NO: 11; VL CDR2 as shown in the amino acid sequence of SEQ ID NO: 12; and VL CDR3 as shown in the amino acid sequence of SEQ ID NO: 13; and the heavy chain variable region comprises the following CDRs: VH CDR1 as shown in the amino acid sequence of SEQ ID NO: 14; VH CDR2 as shown in the amino acid sequence of SEQ ID NO: 15; and VH CDR3 as shown in the amino acid sequence of SEQ ID NO: 16.
2 . The Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 , the amino acid sequence of the light chain variable region is as shown in SEQ ID NO: 9; or the amino acid sequence of the heavy chain variable region is as shown in SEQ ID NO: 10.
3 . The Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 , wherein the Sirpα-targeting antibody is a humanized antibody;
a framework region of the humanized antibody comprises a heavy chain framework region of a human antibody and a light chain framework region of a human antibody;
the light chain variable region comprises the amino acid sequence as shown in SEQ ID NO: 29, and the heavy chain variable region comprises the amino acid sequence as shown in SEQ ID NO: 35; or alternatively, the light chain variable region comprises the amino acid sequence as shown in SEQ ID NO: 30, and the heavy chain variable region comprises the amino acid sequence as shown in any one of SEQ ID NOs: 36-41; or alternatively, the light chain variable region comprises the amino acid sequence as shown in any one of SEQ ID NOs: 31-34, and the heavy chain variable region comprises the amino acid sequence as shown in SEQ ID NO: 36; or alternatively, the light chain variable region comprises the amino acid sequence as shown in any one of SEQ ID NO: 29 or 31-34, and the heavy chain variable region comprises the amino acid sequence as shown in SEQ ID NO: 39.
4 . The Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 3 , wherein the light chain of the antibody or the antigen-binding fragment thereof comprises a κ or λ type light chain constant region of a human antibody or a mutation thereof; or the heavy chain of the antibody or the antigen-binding fragment thereof comprises a heavy chain constant region of human IgG1, IgG2, IgG3 or IgG4 or a mutation thereof;
the Sirpα-targeting antibody or the antigen-binding fragment thereof comprising the following light and heavy chains: the light chain shown in any one of the amino acid sequences of SEQ ID NO: 42 or 44-48, and the heavy chain shown in the amino acid sequence of SEQ ID NO: 43.
5 . The Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 , wherein the Sirpα-targeting antibody or the antigen-binding fragment thereof comprises immunoglobulin, Fab, Fab′, F(ab′) 2 , Fv or scFv, a bispecific antibody or a multispecific antibody.
6 . An isolated nucleic acid, wherein the isolated nucleic acid encodes the Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 .
7 . A recombinant expression vector comprising the isolated nucleic acid of claim 6 .
8 . A transformant comprising the recombinant expression vector of claim 7 in a host cell.
9 . A method for preparing a Sirpα-targeting antibody or an antigen-binding fragment thereof, comprising culturing the transformant of claim 8 , and obtaining the Sirpα-targeting antibody or the antigen-binding fragment thereof from a culture.
10 . A pharmaceutical composition comprising the Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 , and a pharmaceutically acceptable carrier.
11 . A method for treating a tumor in a subject in need thereof, comprising: administering an effective amount of the Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 to the subject.
12 . A method for treating a tumor in a subject in need thereof, comprising: administering an effective amount of the pharmaceutical composition of claim 10 to the subject.
13 . A bispecific antibody comprising a first protein functional region and a second protein functional region, wherein the first protein functional region is the Sirpα-targeting antibody or the antigen-binding fragment thereof of claim 1 ; and the second protein functional region is an antibody targeting a non-Sirpα antigen or an antigen-binding fragment thereof;
the second protein functional region is an anti-PD-1 antibody, the anti-PD-1 antibody is Nivolumab or Pembrolizumab.
14 . The bispecific antibody of claim 13 , wherein the second protein functional region is immunoglobulin, and the first protein functional region is two scFvs; wherein, the scFv comprises a heavy chain variable region and a light chain variable region that are linked by a linker; the scFv is linked to the immunoglobulin through a linker, the linker is as shown in SEQ ID NO: 58, 59, 60 or 61.
15 . The bispecific antibody of claim 14 , the first protein functional region is scFv, and the second protein functional region is immunoglobulin; wherein, the scFv of the first protein functional region comprises the light chain variable region and heavy chain variable region; the amino acid sequence of the light chain variable region is as shown in SEQ ID NO: 9, and the amino acid sequence of the heavy chain variable region is as shown in SEQ ID NO: 10;
wherein, the immunoglobulin comprises the light chain variable region of Pembrolizumab (Pem), the κ type chain as the light chain constant region, the heavy chain variable region of Pembrolizumab (Pem), and the amino acid sequence of hIgG4 as the heavy chain constant region; or alternatively, the immunoglobulin comprises the light chain variable region of Nivolumab (Nivo), the κ type chain as the light chain constant region, the heavy chain variable region of Nivolumab (Nivo), and the amino acid sequence of hIgG4 as the heavy chain constant region;
the C-terminuses of the heavy chain variable regions of the two scFvs are symmetrically linked to the N-terminuses of the two heavy chains of the immunoglobulin through the linker; and, the light chain variable region of the scFv is a light chain variable region having the amino acid sequence as shown in SEQ ID NO: 29, and the heavy chain variable region of the scFv is a heavy chain variable region having the amino acid sequence as shown in SEQ ID NO: 39; or alternatively, the C-terminuses of the heavy chain variable regions of the two scFvs are symmetrically linked to the N-terminuses of the two light chain variable regions of the immunoglobulin through the linker; and, the light chain variable region of the scFv is a light chain variable region having the amino acid sequence as shown in SEQ ID NO: 29, and the heavy chain variable region of the scFv is a heavy chain variable region having the amino acid sequence as shown in SEQ ID NO: 39; or alternatively, the N-terminuses of the heavy chain variable regions of the two scFvs are symmetrically linked to the C-terminuses of the two heavy chains of the immunoglobulin through the linker; and, the light chain variable region of the scFv is a light chain variable region having the amino acid sequence as shown in SEQ ID NO: 29, and the heavy chain variable region of the scFv is a heavy chain variable region having the amino acid sequence as shown in SEQ ID NO: 39; or alternatively, the N-terminuses of the heavy chain variable regions of the two scFvs are symmetrically linked to the C-terminuses of the two light chains of the immunoglobulin through the linker; and, the light chain variable region of the scFv is a light chain variable region having the amino acid sequence as shown in SEQ ID NO: 29, and the heavy chain variable region of the scFv is a heavy chain variable region having the amino acid sequence as shown in SEQ ID NO: 39.
16 . The bispecific antibody of claim 13 , wherein the bispecific antibody comprises the following light chain amino acid sequence and heavy chain amino acid sequence:
wherein the light chain amino acid sequence as shown in SEQ ID NO: 50, and the heavy chain amino acid sequence as shown in SEQ ID NO: 51; or alternatively, the light chain amino acid sequence as shown in SEQ ID NO: 52, and the heavy chain amino acid sequence as shown in SEQ ID NO: 53; or alternatively, the light chain amino acid sequence as shown in SEQ ID NO: 54, and the heavy chain amino acid sequence as shown in SEQ ID NO: 51; or alternatively, the light chain amino acid sequence as shown in SEQ ID NO: 52, and the heavy chain amino acid sequence as shown in SEQ ID NO: 55; or alternatively, the light chain amino acid sequence as shown in SEQ ID NO: 56, and the heavy chain amino acid sequence as shown in SEQ ID NO: 57.
17 . A pharmaceutical composition comprising the bispecific antibody of claim 13 , and a pharmaceutically acceptable carrier.
18 . A method for treating a tumor in a subject in need thereof, comprising: administering an effective amount of the bispecific antibody of claim 13 to the subject.
19 . An Sirpα-targeting antibody comprising a light chain variable region and a heavy chain variable region, wherein the light chain variable region comprises the following CDRs: VL CDR1 as shown in the amino acid sequence of SEQ ID NO: 11; VL CDR2 as shown in the amino acid sequence of SEQ ID NO: 12; and VL CDR3 as shown in the amino acid sequence of SEQ ID NO: 13; and the heavy chain variable region comprises the following CDRs: VH CDR1 as shown in the amino acid sequence of SEQ ID NO: 14; VH CDR2 as shown in the amino acid sequence of SEQ ID NO: 15; and VH CDR3 as shown in the amino acid sequence of SEQ ID NO: 16.