Brain-targeting single domain antibodies and purification methods
Provided herein are single domain antibodies (sdAbs) configured for passing the blood brain barrier in a human or mammal brain. Methods of using such sdAbs are also described herein, such as methods of binding to brain cells, binding with and transporting other sdAbs with beneficial functionalities, binding to and transporting biochemical or pharmaceutical species with beneficial functionalities, and treating, diagnosing, or prophylactically treating a disease, malignancy, or condition.
1. A single domain antibody construct, comprising a first single domain antibody with a binding domain, wherein the binding domain comprises:
a first polypeptide comprising first, second, and third complementarity determining regions selected from the group consisting of the following combinations:
SEQ ID NOs: 1, 26, and 51, respectively;
SEQ ID NOs: 2, 27, and 52, respectively;
SEQ ID NOs: 3, 28, and 53, respectively;
SEQ ID NOs: 4, 29, and 54, respectively;
SEQ ID NOs: 5, 30, and 55, respectively;
SEQ ID NOs: 6, 31, and 56, respectively;
SEQ ID NOs: 7, 32, and 57, respectively;
SEQ ID NOs: 8, 33, and 58, respectively;
SEQ ID NOs: 9, 34, and 59, respectively;
SEQ ID NOs: 10, 35, and 60, respectively;
SEQ ID NOs: 11, 36, and 61, respectively;
SEQ ID NOs: 12, 37, and 62, respectively;
SEQ ID NOs: 13, 38, and 63, respectively;
SEQ ID NOs: 14, 39, and 64, respectively;
SEQ ID NOs: 15, 40, and 65, respectively;
SEQ ID NOs: 16, 41, and 66, respectively;
SEQ ID NOs: 17, 42, and 67, respectively;
SEQ ID NOs: 18, 43, and 68, respectively;
SEQ ID NOs: 19, 44, and 69, respectively;
SEQ ID NOs: 20, 45, and 70, respectively;
SEQ ID NOs: 21, 46, and 71, respectively;
SEQ ID NOs: 22, 47, and 72, respectively;
SEQ ID NOs: 23, 48, and 73, respectively;
SEQ ID NOs: 24, 49, and 74, respectively; and
SEQ ID NOs: 25, 50, and 75, respectively.
2. The single domain antibody construct of claim 1 , further comprising one or more therapeutic or diagnostic agents.
3. The single domain antibody construct of claim 1 , further comprising a therapeutic agent selected from the group consisting of: a therapeutic antibody, a small molecule drug, a chemotherapeutic agent, an antiviral agent, an antibacterial agent, an anti-inflammatory agent, and a scavenging agent.
4. The single domain antibody construct of claim 1 , further comprising a diagnostic agent selected from the group consisting of: an imaging agent, a marker, a dye, a detectable moiety, and a label.
5. The single domain antibody construct of claim 1 , further comprising a second single domain antibody with a second binding domain, wherein the binding domain is configured to target brain cells; and the second binding domain is configured to treat or diagnose a disease or malignancy.
6. The single domain antibody construct of claim 1 , further comprising a therapeutic agent with antiviral activity against a coronavirus.
7. The single domain antibody construct of claim 1 , wherein the single domain antibody further comprises:
a first framework region attached to an N-terminus of the first complementarity determining region;
a second framework region disposed between the first and second complementarity determining regions;
a third framework region disposed between the second and third complementarity determining regions; and
a fourth framework region attached to a C-terminus of the third complementarity determining region.
8. The single domain antibody construct of claim 1 , wherein the first single domain antibody comprises a polypeptide sequence corresponding to any one of SEQ ID NOs: 183-186, wherein CDR1 comprises the first complementarity determining region, wherein CDR2 comprises the second complementarity determining region, and wherein CDR3 comprises the third complementarity determining region.
9. The single domain antibody construct of claim 1 , wherein the first single domain antibody is a polypeptide sequence corresponding to any one of SEQ ID NOs: 76-100.
10. The single domain antibody construct of claim 1 , wherein the binding domain is configured to penetrate the blood brain barrier and accumulate in the brain tissue.
11. The single domain antibody construct of claim 1 , wherein the binding domain is configured to bind to an endothelial cell.
12. The single domain antibody construct of claim 1 , wherein the first single domain antibody is expressed as a fusion protein to coat protein gIIIp of M13 phage.
13. A vector comprising:
a phage configured to express a first single domain antibody with a binding domain, wherein the binding domain comprises:
a first polypeptide comprising first, second, and third complementarity determining regions selected from the group consisting of the following combinations:
SEQ ID NOs: 1, 26, and 51, respectively;
SEQ ID NOs: 2, 27, and 52, respectively;
SEQ ID NOs: 3, 28, and 53, respectively;
SEQ ID NOs: 4, 29, and 54, respectively;
SEQ ID NOs: 5, 30, and 55, respectively;
SEQ ID NOs: 6, 31, and 56, respectively;
SEQ ID NOs: 7, 32, and 57, respectively;
SEQ ID NOs: 8, 33, and 58, respectively;
SEQ ID NOs: 9, 34, and 59, respectively;
SEQ ID NOs: 10, 35, and 60, respectively;
SEQ ID NOs: 11, 36, and 61, respectively;
SEQ ID NOs: 12, 37, and 62, respectively;
SEQ ID NOs: 13, 38, and 63, respectively;
SEQ ID NOs: 14, 39, and 64, respectively;
SEQ ID NOs: 15, 40, and 65, respectively;
SEQ ID NOs: 16, 41, and 66, respectively;
SEQ ID NOs: 17, 42, and 67, respectively;
SEQ ID NOs: 18, 43, and 68, respectively;
SEQ ID NOs: 19, 44, and 69, respectively;
SEQ ID NOs: 20, 45, and 70, respectively;
SEQ ID NOs: 21, 46, and 71, respectively;
SEQ ID NOs: 22, 47, and 72, respectively;
SEQ ID NOs: 23, 48, and 73, respectively;
SEQ ID NOs: 24, 49, and 74, respectively; and
SEQ ID NOs: 25, 50, and 75, respectively.
14. The vector of claim 13 , wherein the phage comprises an M13 bacteriophage.
15. The vector of claim 13 , wherein the first single domain antibody is expressed as a fusion protein to coat protein gIIIp of M13 bacteriophage.
16. The vector of claim 13 , wherein the first single domain antibody is a polypeptide sequence corresponding to any one of SEQ ID NOs: 76-100.
17. The vector of claim 13 , wherein the binding domain is configured to penetrate a blood brain barrier and accumulate in the brain tissue.
18. The vector of claim 13 , wherein the binding domain is configured to bind to an endothelial cell.
19. The single domain antibody construct of claim 1 , wherein the first polypeptide comprising first, second, and third complementarity determining regions are selected from the group consisting of the following combinations:
SEQ ID NOs: 1, 26, and 51, respectively;
SEQ ID NOs: 2, 27, and 52, respectively;
SEQ ID NOs: 3, 28, and 53, respectively; and
SEQ ID NO: 4, 29, and 54, respectively.