Neuroendocrine tumors
The disclosure provides methods for the use of gene expression measurements to classify or identify neuroendocrine cancer in samples obtained from a subject in a clinical setting, such as in cases of formalin fixed, paraffin embedded (FFPE) samples.
1 . A kit comprising (i) a reverse transcriptase and (ii) probes, primers, or both probes and primers for a gene panel, wherein the gene panel is for classifying a sample as containing pancreatic neuroendocrine tumor cells and wherein the gene panel is a four-gene panel consisting of ELAVL4, CADPS, RGS17, and KCNJ11;
wherein the probes, primers, or both probes and primers for the four-gene panel consist of: one or more probes, primers, or both probes and primers that are complementary to a portion of an ELAVL4 cDNA sequence and are labeled with a fluorescent molecule; one or more probes, primers, or both probes and primers that are complementary to a portion of an CADPS cDNA sequence and are labeled with a fluorescent molecule, one or more probes, primers, or both probes and primers that are complementary to a portion of an RGS17 cDNA sequence and are labeled with a fluorescent molecule; and one or more fourth probes, primers, or both probes and primers that are complementary to a portion of an KCNJ11 cDNA sequence and are labeled with a fluorescent molecule,
wherein the kit does not comprise probes, primers, or both probes or primers for genes other than ELAVL4, CADPS, RGS17, and KCNJ11.
2 . The kit of claim 1 , wherein the probes, primers, or both probes and primers for the four-gene panel are immobilized on an array or another solid support device or are immobilized in individual spots that localize the probes, primers, or both probes and primers.
3 . The kit of claim 1 , further comprising one or more reagents for linear RNA amplification.
4 . The kit of claim 1 , further comprising one or more additional reagents for quantitative PCR, real-time PCR, real-time quantitative PCR, or reverse transcription PCR.
5 . The kit of claim 1 , further comprising one or more reagents for an RNAse protection assay, liquid phase hybridization, or in situ hybridization.
6 . The kit of claim 1 , further comprising one or more enzymes for quantitative PCR amplification.
7 . The kit of claim 1 , wherein the kit further comprises data on expression levels of ELAVL4, CADPS, RGS17 and KCNJ11 from a known reference specimen.
8 . The kit of claim 1 , wherein the kit further comprises directions for performing a method for classifying the sample as containing pancreatic neuroendocrine tumor cells.