US 20110262474A1
· Du et al.
· 2011
[cited by applicant]
WO WO201615442A1
· 2016
[cited by applicant]
WO WO2016145102A1
· 2016
[cited by applicant]
WO WO2016205704A2
· 2016
[cited by applicant]
Gerhardt, M., et al., Jul. 2005, In-Depth, Longitudinal Analysis of Viral Quasispecies from an Individual Triply Infected with Late-Stage Human Immunodeficiency Virus Type 1, Using a Multiple PCR Primer Approach, J. Vir…
[cited by examiner]
Arnaout, et al., “High-Resolution Description of Antibody Heavy-Chain Repertoires in Humans,” PLoS One, vol. 6, No. 8, 2011, 8 pages.
[cited by applicant]
Bern, et al., “Chapter 13: Byonic: advanced peptide and protein identification software,” Current Protocols in Bioinformatics, vol. 40, No. 1, 2012, 14 pages.
[cited by applicant]
Bonsignori, et al., “Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody,” Cell, vol. 165, No. 2, 2016, pp. 449-463.
[cited by applicant]
Briney, et al., “Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies,” Cell, vol. 166, No. 6, 2016, pp. 1459-1470.e11.
[cited by applicant]
Dosenovic, et al., “Immunization for HIV-1 Broadly Neutralizing Antibodies in Human Ig Knockin Mice,” Cell, vol. 161, No. 7, 2015, pp. 1505-1515.
[cited by applicant]
Emsley & Cowtan, “Coot: model-building tools for molecular graphics,” Acta Crystallographica Section D, vol. 60, No. 12, 2004, pp. 2126-2132.
[cited by applicant]
Escolano, et al., “Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice,” Cell, vol. 166, No. 6, 2016, pp. 1445-1458.e12.
[cited by applicant]
Gautam, et al., “A single injection of anti-HIV-1 antibodies protects against repeated SHIV challenges,” Nature, vol. 533, No. 7601, 2016, pp. 105-109.
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087228, Mus musculus clone N-p4a9-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087231, Mus musculus clone P-p1g2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087234, Mus musculus clone P-p1d3-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087239, Mus musculus clone B-p2e1-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087243, Mus musculus clone B-p1f2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087247, Mus musculus clone B-p1c10-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087251, Mus musculus clone B-p1a9-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087254, Mus musculus clone P-p1c4-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087261, Mus musculus clone P-p1f2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087268, Mus musculus clone P-p1f1-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087275, Mus musculus clone P-p1g2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087277, Mus musculus clone P-p1e3-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087282, Mus musculus clone B-p2e2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087286, Mus musculus clone B-p1f8-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087290, Mus musculus clone B-p1c11-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087294, Mus musculus clone B-p1a11-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087296, Mus musculus clone B-p1a9-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087302, Mus musculus clone P-p2b7-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087307, Mus musculus clone P-p4c5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087312, Mus musculus clone P-p1f1-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087313, Mus musculus clone P-p1e7-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087314, Mus musculus clone P-p1d1-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179663, Synthetic construct 93TH057 WT Core gp120 C4b multimer protein …
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179667, Synthetic construct Q168a2 WT Core gp120 protein gene, complete…
[cited by applicant]
Kanekiyo, et al., “Rational Design of an Epstein-Barr Virus Vaccine Targeting the Receptor-Binding Site,” Cell, vol. 162, No. 5, 2015, pp. 1090-1100.
[cited by applicant]
Kwong, & Mascola, “Human Antibodies that Neutralize HIV-1: Identification, Structures, and B Cell Ontogenies,” Immunity, vol. 37, No. 3, 2012, pp. 412-425.
[cited by applicant]
Liao, et al., “Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus,” Nature, vol. 496, No. 7446, 2013, pp. 469-476.
[cited by applicant]
Mcguire, et al., “Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice,” Nature Communications, vol. 7, No. 10618, 2016, 9 pages.
[cited by applicant]
Medina-Ramírez, et al., “Design and crystal structure of a native-like HIV-1 envelope trimer that engages multiple broadly neutralizing antibody precursors in vivo,” Journal of Experimental Medicine, vol. 214, No. 9, 20…
[cited by applicant]
Parks, et al., “Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization,” Cell Reports, vol. 29, No. 10, 2019, pp. 3060-3072.e7.
[cited by applicant]
Pegu, et al., “Neutralizing antibodies to HIV-1 envelope protect more effectively in vivo than those to the CD4 receptor,” Science Translational Medicine, vol. 6, No. 243, 2014, 9 pages.
[cited by applicant]
Scharf, et al., “Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody,” Pnas USA, vol. 110, No. 15, 2013, pp. 6049-6054.
[cited by applicant]
Scheid, et al., “Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding,” Science, vol. 333, No. 6049, 2011, pp. 1633-1637.
[cited by applicant]
Scheres, “A Bayesian view on cryo-EM structure determination,” Journal of Molecular Biology, vol. 415, No. 2, 2012, pp. 406-418.
[cited by applicant]
Scheres, “RELION: Implementation of a Bayesian approach to cryo-EM structure determination,” Journal of Structural Biology, vol. 180, No. 3, 2012, pp. 519-530.
[cited by applicant]
Shingai, et al., “Passive transfer of modest titers of potent and broadly neutralizing anti-HIV monoclonal antibodies block SHIV infection in macaques,” Journal of Experimental Medicine, vol. 211, No. 10, 2014, pp. 2061…
[cited by applicant]
Sok, et al., “Priming HIV-1 broadly neutralizing antibody precursors in human Ig loci transgenic mice,” Science, vol. 353, No. 6307, 2016, pp. 1557-1560.
[cited by applicant]
Suloway, et al., “Automated molecular microscopy: The new Leginon system,” Journal of Structural Biology, vol. 151, No. 1, 2005, pp. 41-60.
[cited by applicant]
Veesler, et al., “Single-particle EM reveals plasticity of interactions between the adenovirus penton base and integrin ALPHA-v BETa-3,” PNAS USA, vol. 111, No. 24, 2014, pp. 8815-8819.
[cited by applicant]
Voss, et al., “DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy,” Journal of Structural Biology, vol. 166, No. 2, 2009, pp. 205-213.
[cited by applicant]
Weidle, et al., “Crystal structure of glycosylated 426c HIV-1 gp120 core G459C in complex with gIVRC01 A60C heavy chain,” World Wide Protein Data Bank, 2020, 49 pages.
[cited by applicant]
Wu, et al., “Rational Design of Envelope Identifies Broadly Neutralizing Human Monoclonal Antibodies to HIV-1,” Science, vol. 329, No. 5993, 2010, pp. 856-861.
[cited by applicant]
Bachmann, et al., “Neutralizing Antiviral B Cell Responses,” Annual Review of Immunology, vol. 15, 1997, pp. 235-270.
[cited by applicant]
Balazs, et al., “Antibody-based protection against HIV infection by vectored immunoprophylaxis,” Nature, vol. 481, 2012, pp. 81-84.
[cited by applicant]
Blom, et al., “Complement inhibitor C4b-binding protein-friend or foe in the innate immune system?,” Molecular Immunology, vol. 40, No. 18, 2004, pp. 1333-1346.
[cited by applicant]
Bonsignori, et al., “Inference of the HIV-1 VRC01 Antibody Lineage Unmutated Common Ancestor Reveals Alternative Pathways to Overcome a Key Glycan Barrier,” Immunity, vol. 49, No. 6, 2018, pp. 1162-1174.e8.
[cited by applicant]
Dintzis, et al., “Molecular determinants of immunogenicity: the immunon model of immune response,” PNAS USA, vol. 73, No. 10, 1976, pp. 3671-3675.
[cited by applicant]
Escolano, et al., “Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques,” Nature, vol. 570, 2019, pp. 468-473.
[cited by applicant]
Forbes, et al., “T Cell Responses Induced by Adenoviral Vectored Vaccines Can be Adjuvanted by Fusion of Antigen to the Oligomerization Domain of C4b-binding Protein,” PLoS One, vol. 7, No. 9, 2012, 12 pages.
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087229, Mus musculus clone N-p3g9-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087232, Mus musculus clone P-p1e5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087233, Mus musculus clone P-p1e3-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087235, Mus musculus clone P-p1d1-C-LC immunoglobulin light chain varia…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087238, Mus musculus clone B-p2e1-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087244, Mus musculus clone B-p1d12-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087248, Mus musculus clone B-p1b11-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087253, Mus musculus clone P-p1d1-B-LC immunoglobulin light chain varia…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087258, Mus musculus clone P-p2b7-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087262, Mus musculus clone P-p1d8-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087267, Mus musculus clone P-p1f10-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087269, Mus musculus clone P-p1e7-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087272, Mus musculus clone N-p4a9-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087273, Mus musculus clone N-p3g9-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087274, Mus musculus clone P-p1h2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087276, Mus musculus clone P-p1e5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087279, Mus musculus clone P-p1d1-C-HC immunoglobulin heavy chain varia…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087281, Mus musculus clone P-p1a6-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087284, Mus musculus clone B-p2d6-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087287, Mus musculus clone B-p1f2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087295, Mus musculus clone B-p1a10-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087303, Mus musculus clone P-p2b5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087309, Mus musculus clone P-p3b3-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179668, Synthetic construct 45_01dH1 WT Core gp120 protein gene, comple…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179671, Synthetic construct HxB2 WT Core gp120 C4b multimer with 2W1S t…
[cited by applicant]
Hoot, et al., “Recombinant HIV envelope proteins fail to engage germline versions of anti-CD4bs bNAbs,” PLoS Pathogen, vol. 9, No. 1, 2013, 14 pages.
[cited by applicant]
Kanekiyo, et al., “Self-assembling influenza nanoparticle vaccines elicit broadly neutralizing H1N1 antibodies,” Nature, vol. 499, 2013, pp. 102-106.
[cited by applicant]
Klein, et al., “Somatic Mutations of the Immunoglobulin Framework are Generally Required for Broad and Potent HIV-1 Neutralization,” Cell, vol. 153, No. 1, 2013, pp. 126-138.
[cited by applicant]
Ludtke, et al., “EMAN: semiautomated software for high-resolution single-particle reconstructions,” Journal of Structural Biology, vol. 128, No. 1, 1999, pp. 82-97.
[cited by applicant]
Lynch, et al., “HIV-1 Fitness Cost Associated with Escape from the VRC01 Class of CD4 Binding Site Neutralizing Antibodies,” Journal of Virology, vol. 89, No. 8, 2015, pp. 4201-4213.
[cited by applicant]
McGuire, et al., “Engineering HIV envelope protein to activate germline B cell receptors of broadly neutralizing anti-CD4 binding site antibodies,” Journal of Experimental Medicine, vol. 210, No. 4, 2013, pp. 655-663.
[cited by applicant]
Mohan, et al., “Sequential Immunization with a panel of HIV-1 Env virus-like particles coach immune system to make broadly neutralizing antibodies,” Scientific Reports, vol. 8, No. 7, 2018, 12 pages.
[cited by applicant]
Otwinowski and Minor, “[20] Processing of X-ray diffraction data collected in oscillation mode,” Methods in Enzymology, vol. 376, 1997, pp. 307-326.
[cited by applicant]
Search Report and Written Opinion Dated Feb. 6, 2020 for International Application No. PCT/US2019/048825, 14 pages.
[cited by applicant]
Stamatatos, et al., “Germline Targeting Immunogens,” Immunol. Rev., vol. 275, No. 1, 2017, pp. 203-216.
[cited by applicant]
Tian, et al., “Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires,” Cell, vol. 166, No. 6, 2016, pp. 1471-1484.e188.
[cited by applicant]
West, et al., “Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120,” PNAS USA, vol. 109, No. 30, 2012, pp. E2083-E2090.
[cited by applicant]
Wickham, “Tidyverse: Version 1.3.0.9000,” retrieved on Mar. 12, 2021, at << https://tidyverse.tidyverse.org/>>, Tidyverse, Nov. 19, 2019, 4 pages.
[cited by applicant]
Wu, et al., “Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing,” Science, vol. 333, No. 6049, 2011, pp. 1593-1602.
[cited by applicant]
Xiao, et al., “Germline-like predecessors of broadly neutralizing antibodies lack measurable binding to HIV-1 envelope glycoproteins: Implications for evasion of immune responses and design of vaccine immunogens,” Bioch…
[cited by applicant]
Yamashita, et al., “Ferritin in the field of nanodevices,” Biochimica et Biophysica Acta, vol. 1800, No. 8, 2010, pp. 846-857.
[cited by applicant]
Zhou, et al., “Multidonor analysis reveals structural elements, genetic determinants, and maturation pathway for HIV-1 neutralization by VRC01-class antibodies,” Immunity, vol. 39, No. 2, 2013, pp. 245-258.
[cited by applicant]
Zhou, et al., “Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors,” Cell, vol. 161, No. 6, 2015, pp. 1280-1292.
[cited by applicant]
Adams, et al., “Recent developments in the PHENIX software for automated crystallographic structure determination,” Journal of Synchrotron Radiation, vol. 11, No. 1, 2004, pp. 53-55.
[cited by applicant]
Balazs, et al., “Vectored immunoprophylaxis protects humanized mice from mucosal HIV transmission,” Nature Medicine, vol. 20, 2014, pp. 296-300.
[cited by applicant]
Borst, et al., “Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core,” eLife: Structural Biology and Molecular Biophysics, vol. 7, 2018, 32 pages.
[cited by applicant]
Doria-Rose, et al., “Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies,” Nature, vol. 509, No. 7498, 2014, pp. 55-62.
[cited by applicant]
Frese, et al., “Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD),” Journal of Proteome Research, vol. 12, No. 3, 2013, pp. 1520-1525.
[cited by applicant]
Freund, et al., “A New Glycan-Dependent CD4-Binding Site Neutralizing Antibody Exerts Pressure on HIV-1 In Vivo,” vol. 11, No. 10, 2015, 19 pages.
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087236, Mus musculus clone P-p1a7-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087237, Mus musculus clone P-p1a6-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087240, Mus musculus clone B-p2d6-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087241, Mus musculus clone B-p2c5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087242, Mus musculus clone B-p1f8-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087250, Mus musculus clone B-p1a10-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087252, Mus musculus clone B-p1a11-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087256, Mus musculus clone P-p1b2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087259, Mus musculus clone P-p2b5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087263, Mus musculus clone P-p4c5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087265, Mus musculus clone P-p3b3-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087271, Mus musculus clone P-p1a8-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087278, Mus musculus clone P-p1d3-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087280, Mus musculus clone P-p1a7-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087285, Mus musculus clone B-p2c5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087289, Mus musculus clone B-p1d7-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087291, Mus musculus clone B-p1c10-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087292, Mus musculus clone B-p1b11-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087298, Mus musculus clone P-p1c4-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087301, Mus musculus clone P-p2b11-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087304, Mus musculus clone P-p2a5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087305, Mus musculus clone P-p1f2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087306, Mus musculus clone P-p1d8-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179660, Synthetic construct QH0692 WT Core gp120 C4b multimer protein g…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179662, Synthetic construct 45_01dH1 WT Core gp120 C4b multimer protein…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179666, Synthetic construct QH0692 WT Core gp120 protein gene, complete…
[cited by applicant]
Havenar-Daughton, et al., “The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen,” Science Translational Medicine, vol. 10, No. 448, 2018, 15 pages.
[cited by applicant]
Invitation to Pay Additional Fees Dated Nov. 27, 2019, for International Application No. PCT/US2019/048825, 3 pages.
[cited by applicant]
Jardine, et al., “HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen,” Science, vol. 351, No. 6280, 2016, pp. 1458-1463.
[cited by applicant]
Jardine, et al., “Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen,” Science, vol. 349, No. 6244, 2015, pp. 156-161.
[cited by applicant]
Kask, et al., “Structural requirements for the intracellular subunit polymerization of the complement inhibitor C4b-binding protein,” Biochemistry, vol. 41, No. 30, 2002, pp. 9349-9357.
[cited by applicant]
Kimanius, et al., “Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2,” eLife: Structural Biology and Molecular Biophysics, 2016, 21 pages.
[cited by applicant]
Lander, et al., “Appion: An integrated, database-driven pipeline to facilitate EM image processing,” Journal of Structural Biology, vol. 166, No. 1, 2009, pp. 95-102.
[cited by applicant]
Maclean, et al., “Skyline: an open source document editor for creating and analyzing targeted proteomics experiments,” Bioinformatics, vol. 26, No. 7, 2010, pp. 966-968.
[cited by applicant]
Mindell and Grigorieff, “Accurate determination of local defocus and specimen tilt in electron microscopy,” Journal of Structural Biology, vol. 142, No. 3, 2003, pp. 334-347.
[cited by applicant]
Montefiori, “Chapter 26: Measuring HIV Neutralization in a Luciferase Reporter Gene Assay,” Methods in Molecular Biology, vol. 485, 2009, pp. 395-405.
[cited by applicant]
Office Action Dated Dec. 22, 2022 for U.S. Appl. No. 17/269,199, 10 pages.
[cited by applicant]
Pages, et al., “Biostrings: Version 3.12,” retrieved on (Mar. 12, 2021) at <<https://bioconductor.org/packages/release/bioc/html/Biostrings.html>>, Bioconductor, 2020, 5 pages.
[cited by applicant]
Sajadi, et al., “Identification of Near-Pan-neutralizing Antibodies against HIV-1 by Deconvolution of Plasma Humoral Responses,” Cell, vol. 173, No. 7, 2018, pp. 1783-1795.e14.
[cited by applicant]
Scharf, et al., “Structural basis for germline antibody recognition of HIV-1 immunogens,” eLife: Structural Biology and Molecular BiophysicsImmunology and Inflammation, 2016, 24 pages.
[cited by applicant]
Tsai, et al., “Exposure to MF59-adjuvanted Influenza Vaccines During Pregnancy—A Retrospective Analysis,” Vaccine, vol. 28, No. 7, 2010, pp. 1877-1880.
[cited by applicant]
Umotoy, et al., “Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan,” Immunity, vol. 51, No. 1, 2019, pp. 141-154.e6.
[cited by applicant]
Yacoob, et al., “Differences in Allelic Frequency and CDRH3 Region Limit the Engagement of HIV Env Immunogens by Putative VRC01 Neutralizing Antibody Precursors,” Cell Reports, vol. 17, No. 6, 2016, pp. 1560-1570.
[cited by applicant]
Zivanov, et al., “New tools for automated high-resolution cryo-EM structure determination in RELION-3,” Elife, vol. 7, No. 42166, 2018, 22 pages.
[cited by applicant]
Charif, et al., “Online synonymous codon usage analyses with the ade4 and seqinR packages,” Bioinformatics, vol. 21, No. 4, 2005, pp. 545-547.
[cited by applicant]
Dekosky, et al., “In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire,” Nature Medicine, vol. 21, 2015, pp. 86-91.
[cited by applicant]
Diskin, et al., “Increasing the Potency and Breadth of an HIV Antibody by Using Structure-Based Rational Design,” Science, vol. 334, No. 6060, 2011, pp. 1289-1293.
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087230, Mus musculus clone P-p1h2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087245, Mus musculus clone B-p1d7-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087246, Mus musculus clone B-p1c11-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087249, Mus musculus clone B-p1b5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087255, Mus musculus clone P-p1b5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087257, Mus musculus clone P-p2b11-LC immunoglobulin light chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087260, Mus musculus clone P-p2a5-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087264, Mus musculus clone P-p4e4-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087266, Mus musculus clone P-p3a2-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087270, Mus musculus clone P-p1d1-LC immunoglobulin light chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087283, Mus musculus clone B-p2e1-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087288, Mus musculus clone B-p1d12-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087293, Mus musculus clone B-p1b5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087297, Mus musculus clone P-p1d1-B-HC immunoglobulin heavy chain varia…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087299, Mus musculus clone P-p1b5-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087300, Mus musculus clone P-p1b2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087308, Mus musculus clone P-p4e4-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087310, Mus musculus clone P-p3a2-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087311, Mus musculus clone P-p1f10-HC immunoglobulin heavy chain variab…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN087315, Mus musculus clone P-p1a8-HC immunoglobulin heavy chain variabl…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179661, Synthetic construct Q168a2 WT Core gp120 C4b multimer protein g…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179664, Synthetic construct 426c WT Core gp120 protein gene, complete c…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179665, Synthetic construct HxB2 WT Core gp120 protein gene, complete c…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179669, Synthetic construct 93TH057 WT Core gp120 protein gene, complet…
[cited by applicant]
GenBank [Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1982]—GenBank Accession No. MN179670, Synthetic construct HxB2 WT Core gp120 C4b multimer protein gen…
[cited by applicant]
Gerhardt, M., et al., Jul. 2005, In-depth, longitudinal analysis of viral quasispecies from an individual triply infected with late-stage human immunodeficiency virus type 1, using a multiple PCR primer approach, J. Vir…
[cited by applicant]
Giudicelli & Lefranc, “IMGT/V-QUEST: IMGT Standardized Analysis of the Immunoglobulin (IG) and T Cell Receptor (TR) Nucleotide Sequences,” Cold Spring Harbor Laboratory Press, 2011, 10 pages.
[cited by applicant]
Guenaga, et al., “Structure-Guided Redesign Increases the Propensity of HIV Env to Generate Highly Stable Soluble Trimers,” Journal of Virology, vol. 90, No. 6, 2015, pp. 2806-2817.
[cited by applicant]
Heikkinen, et al., “Safety of MF59-adjuvanted A/H1N1 influenza vaccine in pregnancy: a comparative cohort study,” American Journal of Obstetrics and Gynecology, vol. 207, No. 3, 2012, pp. 177.e1-177.e8.
[cited by applicant]
Hofmeyer, et al., “Arranged Sevenfold: Structural Insights into the C-Terminal Oligomerization Domain of Human C4b- Binding Protein,” Journal of Molecular Biology, vol. 425, No. 8, 2013, pp. 1302-1317.
[cited by applicant]
Huang, et al., “Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth,” Immunity, vol. 45, No. 5, 2015, pp. 1108-1121.
[cited by applicant]
Jardine, et al., “Rational HIV immunogen design to target specific germline B cell receptors,” Science, vol. 340, No. 6133, 2013, pp. 711-716.
[cited by applicant]
Joyce, et al., “Soluble Prefusion Closed DS-SOSIP.664-Env Trimers of Diverse HIV-1 Strains,” Cell Reports, vol. 21, No. 10, 2017, pp. 2992-3002.
[cited by applicant]
LaBranche, et al., “HIV-1 Envelope Glycan Modifications that Permit Neutralization by Germline-Reverted VRC01-Class Broadly Neutralizing Antibodies,” PloS Pathogens, vol. 14, No. 11, 2018, 21 pages.
[cited by applicant]
Li, et al., “Ferritin nanoparticle technology A new platform for antigen presentation and vaccine development,” Industrial Biotechnology, vol. 2, No. 2, 2006, pp. 143-147.
[cited by applicant]
McGuire, et al., “HIV antibodies. Antigen modification regulates competition of broad and narrow neutralizing HIV antibodies,” Science, vol. 346, No. 6215, 2014, pp. 1380-1383.
[cited by applicant]
Meldrum, et al., “Magnetoferritin: in vitro synthesis of a novel magnetic protein,” Science, vol. 257, No. 5069, 1992, pp. 522-523.
[cited by applicant]
Mouquet, et al., “Polyreactivity increases the apparent affinity of anti-HIV antibodies by heteroligation,” Nature, vol. 467, No. 7315, 2010, pp. 591-595.
[cited by applicant]
Ogun, et al., “The Oligomerization Domain of C4-Binding Protein (C4bp) Acts as an Adjuvant, and the Fusion Protein Comprised of the 19-Kilodalton Merozoite Surface Protein 1 Fused with the Murine C4bp Domain Protects Mi…
[cited by applicant]
Snijder, et al., “An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus,” Immunity, vol. 48, No. 4, 2018, pp. 799-811.e9.
[cited by applicant]
Zhou, et al., “Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01,” Science, vol. 329, No. 5993, 2010, pp. 811-817.
[cited by applicant]