IP Library Granted Patent US 12,186,403
Granted Patent B2
US 12,186,403 · App. 18/479,317 · Granted Jan 7, 2025

Immunoconjugates and methods

Inventors: Xiaojun Han (San Diego, CA); Suvi Tuula Marjukka Orr (San Diego, CA); Kevin Duane Bunker (Escondido, CA); Peter Qinhua Huang (San Diego, CA); Kimberlee Fischer (San Diego, CA)
Assignee: Immunome, Inc.
A61K47/6803A61K31/4745A61K47/55A61K47/6851C07K16/18A61K2039/505
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Quick Facts
Patent No.
US 12,186,403
App. No.
18/479,317
Granted
Jan 7, 2025
Kind
B2
Abstract

Immunoconjugates of the Formula (I) include a linking group for linking an antibody targeting ligand (Ab) to a drug (D). Embodiments of such immunoconjugates are useful for delivering the drug to selected cells or tissues, e.g., for the treatment of cancer. Ab-[S-L 1 -L 2 -L 3 -L 4 -L 5 -L 6 -L 7 -D] n    (I)

Claims (142)

1. An immunoconjugate having Formula (I),

Ab-[S-L 1 -L 2 -L 3 -L 4 -L 5 -L 6 -L 7 -D] n    (I)

wherein:

Ab is an antibody or an antigen-binding fragment;

L 1 is

L 2 is absent,

Z 1 and Z 2 are each individually hydrogen, halogen, NO 2 , —O—(C 1 -C 6 alkyl), or C 1 -C 6 alkyl;

L 3 is —(CH 2 ) n 1 —C(═O)— or —(CH 2 CH 2 O) n 1 —(CH 2 ) n 1 C(═O)—;

each n 1 is independently an integer of 0 to 12;

L 4 is a tetrapeptide residue;

L 5 is absent or —[NH(CH 2 ) n 2 ] n 3 —;

n 2 is an integer of 0 to 6;

n 3 is an integer of 0 to 2;

L 6 is absent or

L 7 is absent,

D is a drug moiety; and

n is an integer from 1 to 10, wherein said antibody or antigen-binding fragment thereof comprises

a heavy chain comprising:

VHCDR 1 comprising an amino acid sequence of SEQ ID NO:1;

VHCDR 2 comprising an amino acid sequence of SEQ ID NO:2; and

VHCDR 3 comprising an amino acid sequence of SEQ ID NO:3; and

a light chain comprising:

VLCDR 1 comprising an amino acid sequence of SEQ ID NO:8;

VLCDR 2 comprising an amino acid sequence of AAS; and

VLCDR 3 comprising an amino acid sequence of SEQ ID NO:10;

wherein the antibody or antigen-binding fragment thereof specifically binds to the extracellular domain of human receptor tyrosine kinase like orphan receptor 1 (ROR1).

2. The immunoconjugate of claim 1 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain variable region comprising an amino acid sequence of SEQ ID NO: 5; and

a light chain variable region comprising an amino acid sequence of SEQ ID NO: 12.

3. The immunoconjugate of claim 1 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain comprising an amino acid sequence of SEQ ID NO: 7; and

a light chain comprising an amino acid sequence of SEQ ID NO: 14.

4. The immunoconjugate of claim 1 , wherein D is a drug moiety of Formula (II) having the structure:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 and R 2 are each individually selected from the group consisting of hydrogen, halogen, —CN, —OR 5 , —NR 5 R 6 , a substituted or an unsubstituted C 1 -C 6 alkyl, a substituted or an unsubstituted C 1 -C 6 haloalkyl, a substituted or an unsubstituted —O—(C 1 -C 6 alkyl), a substituted or an unsubstituted —O—(C 1 -C 6 haloalkyl), —[(CY 2 ) p O(CY 2 ) q ] t CY 3 , or a substituted or an unsubstituted —O—(CR 5 R 6 ) m —O— such that R 1 and R 2 taken together form a ring;

R 3 is hydrogen or a substituted or an unsubstituted C 1 -C 6 alkyl, a substituted or an unsubstituted C 1 -C 6 haloalkyl, or —[(CY 2 ) p O(CY 2 ) q ] t CY 3 ;

R 4 is hydrogen, a substituted or an unsubstituted —(C 1 -C 6 alkyl)-X 2 , a substituted or an unsubstituted —(C 1 -C 6 haloalkyl)-X 2 , a substituted or an unsubstituted —(C 1 -C 6 alkenyl)-X 2 , a substituted or an unsubstituted —(C 1 -C 6 haloalkenyl)-X 2 , a substituted or an unsubstituted —(C 1 -C 6 alkynyl)-X 2 , or a substituted or an unsubstituted —(C 1 -C 6 haloalkynyl)-X 2 ;

X 1 is —O—, —S(O n6 )—, —NH—, —O—(C═O)—, —NH—(C═O)—, —NH—(C═O)—O—, —NH—(C═O)—NH—, or —NH—S(O n6 )—;

X 2 is —OR 9 , —SR 9 , or —NHR 9 ;

R 5 and R 6 are each individually hydrogen, halogen, a substituted or an unsubstituted C 1 -C 6 alkyl, a substituted or an unsubstituted C 1 -C 6 haloalkyl, or —[(CY 2 ) p O(CY 2 ) q ] t CY 3 ;

m is 1 or 2;

n 4 and n 5 are each individually 0, 1 or 2, with the proviso that n 4 and n 5 are not both 0;

n 6 is 0, 1 or 2;

each Y is individually H or halogen;

each p is individually 1, 2, 3, 4, 5, or 6;

each q is individually 0, 1, 2, 3, 4, 5, or 6;

each t is individually 1, 2, 3, 4, 5, or 6;

R 7 is H, —COR 8 , —CO 2 R 8 , —(CO)—NHR 8 , L 4 , L 5 , L 6 , or L 7 ;

R 8 is a substituted or an unsubstituted C 1 -C 6 alkyl-X 3 , a substituted or an unsubstituted C 1 -C 6 haloalkyl-X 3 , or —[(CY 2 ) p O(CY 2 ) q ] t CY 2 —X 3 ;

R 9 is H, —COR 8 , —CO 2 R 8 , —(CO)—NHR 8 , L 4 , L 5 , L 6 , or L 7 , with the proviso that exactly one of R 7 and R 9 is L 4 , L 5 , L 6 , or L 7 ; and

each X 3 is individually —H, —OH, —SH, or —NH 2 .

5. The immunoconjugate of claim 4 , wherein:

R 1 and R 2 are each individually selected from the group consisting of hydrogen, halogen, —OR 5 , an unsubstituted C 1 -C 6 alkyl, an unsubstituted C 1 -C 6 haloalkyl, an unsubstituted —O—(C 1 -C 6 alkyl), and an unsubstituted —O—(CR 5 R 6 ) m —O-such that R 1 and R 2 taken together form a ring;

R 3 is hydrogen or an unsubstituted C 1 -C 6 alkyl;

R 4 is —(C 1 -C 6 alkyl)-X 2 ;

X 1 is —O—;

X 2 is —OR 9 ;

R 5 and R 6 are each individually hydrogen;

mis 1;

n 4 is 1 or 2;

n 5 is 0;

R 7 is H; and

R 9 is L 4 , L 5 , L 6 , or L 7 .

6. The immunoconjugate of claim 5 , wherein n 4 is 1.

7. The immunoconjugate of claim 5 , wherein n 4 is 2.

8. The immunoconjugate of claim 5 , wherein:

L 2 is absent;

n 1 5;

L 4 is gly-gly-phe-gly (SEO ID NO: 43);

L 5 is —[NH(CH 2 ) n 2 ] n 3 —;

n 2 is 1;

n 3 is 1; and

L 7 is absent.

9. The immunoconjugate of claim 5 , wherein:

L 2 is

Z 1 and Z 2 are each individually hydrogen;

n 1 is 2;

L 4 is gly-gly-phe-gly (SEO ID NO: 43);

L 5 is —[NH(CH 2 ) n 2 ] n 3 —;

n 2 is 1;

n 3 is 1; and

L 7 is absent.

10. The immunoconjugate of claim 4 , wherein D is a compound of Formula (II) having the structure:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 is methyl;

R 2 is fluoro;

R 3 is hydrogen;

R 4 is an unsubstituted —(C 2 alkyl)-X 2 ; and

n 4 is 2.

11. The immunoconjugate of claim 4 , wherein D is a compound of Formula (II) having the structure:

or a pharmaceutically acceptable salt thereof, wherein R 9 is L 4 , L 5 , L 6 , or L 7 .

12. The immunoconjugate of claim 4 , wherein D is a compound of Formula (II) having the structure:

or a pharmaceutically acceptable salt thereof, wherein R 9 is L 4 , L 5 , L 6 , or L 7 .

13. The immunoconjugate of claim 4 , wherein D is a compound of Formula (II) having the structure:

or a pharmaceutically acceptable salt thereof, wherein R 9 is L 4 , L 5 , L 6 , or L 7 .

14. An immunoconjugate selected from the group consisting of:

wherein:

Ab is an antibody or antigen-binding fragment thereof comprising:

a heavy chain comprising:

VHCDR 1 comprising an amino acid sequence of SEQ ID NO:1;

VHCDR 2 comprising an amino acid sequence of SEQ ID NO:2; and

VHCDR 3 comprising an amino acid sequence of SEQ ID NO:3; and

a light chain comprising:

VLCDR 1 comprising an amino acid sequence of SEQ ID NO:8;

VLCDR 2 comprising an amino acid sequence of AAS; and

VLCDR 3 comprising an amino acid sequence of SEQ ID NO:10;

wherein the antibody or antigen-binding fragment thereof specifically binds to the extracellular domain of human receptor tyrosine kinase like orphan receptor 1 (ROR1).

15. The immunoconjugate of claim 14 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain variable region comprising an amino acid sequence identical to SEQ ID NO: 5; and

a light chain variable region comprising an amino acid sequence identical to SEQ ID NO: 12.

16. The immunoconjugate of claim 14 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain comprising an amino acid sequence identical to SEQ ID NO: 7; and

a light chain comprising an amino acid sequence identical to SEQ ID NO: 14.

17. The immunoconjugate of claim 14 , wherein the immunoconjugate is:

18. The immunoconjugate of claim 14 , wherein the immunoconjugate is:

19. The immunoconjugate of claim 15 , wherein the immunoconjugate is:

20. The immunoconjugate of claim 15 , wherein the immunoconjugate is:

21. An immunoconjugate selected from the group consisting of:

wherein:

Ab is an antibody or antigen-binding fragment thereof comprising:

a heavy chain comprising:

VHCDR 1 comprising an amino acid sequence of SEQ ID NO:1;

VHCDR 2 comprising an amino acid sequence of SEQ ID NO:2; and

VHCDR 3 comprising an amino acid sequence of SEQ ID NO:3; and

a light chain comprising:

VLCDR 1 comprising an amino acid sequence of SEQ ID NO:8;

VLCDR 2 comprising an amino acid sequence of AAS; and

VLCDR 3 comprising an amino acid sequence of SEQ ID NO:10;

wherein the antibody or antigen-binding fragment thereof specifically binds to the extracellular domain of human receptor tyrosine kinase like orphan receptor 1 (ROR1).

22. The immunoconjugate of claim 21 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain variable region comprising an amino acid sequence identical to SEQ ID NO: 5; and

a light chain variable region comprising an amino acid sequence identical to SEQ ID NO: 12.

23. The immunoconjugate of claim 21 , wherein the antibody or antigen-binding fragment thereof comprises

a heavy chain comprising an amino acid sequence identical to SEQ ID NO: 7; and

a light chain comprising an amino acid sequence identical to SEQ ID NO: 14.

24. The immunoconjugate of claim 21 , wherein the immunoconjugate is:

25. The immunoconjugate of claim 21 , wherein the immunoconjugate is:

26. The immunoconjugate of claim 22 , wherein the immunoconjugate is:

27. The immunoconjugate of claim 22 , wherein the immunoconjugate is:

28. A method for treating a cancer or a tumor comprising administering an effective amount of an immunoconjugate of claim 21 , or a pharmaceutical composition thereof, to a subject having the cancer or the tumor, wherein the cancer or the tumor expresses the extracellular domain of human receptor tyrosine kinase-like orphan receptor (ROR1).

29. The method of claim 28 , wherein the cancer or the tumor is selected from lung cancer, urothelial cancer, colorectal cancer, prostate cancer, ovarian cancer, pancreatic cancer, breast cancer, bladder cancer, gastric cancer, gastrointestinal stromal tumor, uterine cervix cancer, esophageal cancer, squamous cell carcinoma, peritoneal cancer, liver cancer, hepatocellular cancer, colon cancer, rectal cancer, colorectal cancer, endometrial cancer, uterine cancer, salivary gland cancer, kidney cancer, vulval cancer, thyroid cancer, penis cancer, leukemia, malignant lymphoma, plasmacytoma, myeloma, and sarcoma.

30. A method for treating a cancer or a tumor comprising administering an effective amount of an immunoconjugate of claim 14 , or a pharmaceutical composition thereof, to a subject having the cancer or the tumor, wherein the cancer or the tumor expresses the extracellular domain of human receptor tyrosine kinase-like orphan receptor (ROR1); and the cancer or the tumor is selected from lung cancer, urothelial cancer, colorectal cancer, prostate cancer, ovarian cancer, pancreatic cancer, breast cancer, bladder cancer, gastric cancer, gastrointestinal stromal tumor, uterine cervix cancer, esophageal cancer, squamous cell carcinoma, peritoneal cancer, liver cancer, hepatocellular cancer, colon cancer, rectal cancer, colorectal cancer, endometrial cancer, uterine cancer, salivary gland cancer, kidney cancer, vulval cancer, thyroid cancer, penis cancer, leukemia, malignant lymphoma, plasmacytoma, myeloma, and sarcoma.

Assignments (4)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 4, 2024
From: ZENO MANAGEMENT, INC.
To: RECURIUM IP HOLDINGS, LLC
Reel/Frame 069127/0938 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 4, 2024
From: RECURIUM IP HOLDINGS, LLC
To: ZENO MANAGEMENT, INC.
Reel/Frame 069128/0062 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 30, 2024
From: ZENO MANAGEMENT, INC.
To: IMMUNOME, INC.
Reel/Frame 069081/0710 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 2, 2023
From: HAN, XIAOJUN; ORR, SUVI TUULA MARJUKKA; BUNKER, KEVIN DUANE; HUANG, PETER QINHUA; FISCHER, KIMBERLEE
To: ZENO MANAGEMENT, INC.
Reel/Frame 065096/0202 →
Continuity (5)
Continuation 17936346 · Sep 28, 2022
Continuation In Part 17812869 · Jul 15, 2022
Provisional Application 63267471 · Feb 2, 2022
Provisional Application 63203347 · Jul 19, 2021
Related Publication 20240075153A1 · Mar 7, 2024
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