IP Library Granted Patent US 12,485,187
Granted Patent B2
US 12,485,187 · App. 18/597,488 · Granted Dec 2, 2025

Method for improving retroviral transduction and gene editing in hematopoietic stem cells using clyclosporin H and UM171

Inventors: Anna Christina Kajaste-Rudnitski (Milan, IT); Carolina Petrillo (Milan, IT); Bernhard Rudolf Gentner (Milan, IT); Luigi Naldini (Milan, IT); Pietro Genovese (Milan, IT); Giulia Schiroli (Milan, IT)
Assignees: Ospedale San Raffaele S.R.L.; Fondazione Telethon
A61K48/0008C07K7/645C12N5/0647C12N15/69C12N15/86C12N2740/15043
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Quick Facts
Patent No.
US 12,485,187
App. No.
18/597,488
Granted
Dec 2, 2025
Kind
B2
Abstract

Use of cyclosporin H (CsH) or a derivative thereof for increasing the efficiency of transduction of an isolated population of cells by a viral vector and/or increasing the efficiency of gene editing of an isolated population of cells when transduced by a viral vector.

Claims (30)

1 . A method of transducing a population of CD34+ HSPCs comprising the steps of:

(a) culturing the population of HSPCs in the presence of UM171;

(b) contacting the population of HSPCs with cyclosporin H (CsH); and

(c) transducing the population of HSPCs with a viral vector, wherein the viral vector is a lentiviral or gammaretroviral vector, and wherein the viral vector is pseudotyped to enter cells via an endocytosis-dependent mechanism.

2 . The method of claim 1 , wherein the viral vector is a VSV-g pseudotyped vector.

3 . The method of claim 1 , wherein the viral vector is a lentiviral vector.

4 . The method of claim 1 , wherein the viral vector is an integration-defective lentiviral vector (IDLV).

5 . The method of claim 1 , wherein the HSPCs are stimulated HSPCs.

6 . The method of claim 1 , wherein the population of HSPCs is cultured in step (a) in the further presence of StemRegenin 1 (SR-1).

7 . The method of claim 1 , wherein the population of HSPCs is cultured in step (a) in the further presence of prostaglandin E2.

8 . The method of claim 7 , wherein the prostaglandin E2 is 16-16 dimethyl prostaglandin E2.

9 . The method of claim 1 , wherein the viral vector comprises a nucleotide of interest.

10 . The method of claim 9 , wherein the nucleotide of interest is a donor template.

11 . The method of claim 1 , wherein the method further comprises the step:

(d) contacting the population of HSPCs with a CRISPR/Cas system.

12 . The method of claim 11 , wherein the CRISPR/Cas system comprises a ribonucleoprotein (RNP) comprising Cas protein and gRNA.

13 . The method of claim 11 , wherein step (d) comprises electroporating the population of HSPCs.

14 . The method of claim 1 , wherein efficiency of transduction of the population of HSPCs by the viral vector is increased and/or efficiency of gene editing of the population of HSPCs when transduced by the viral vector is increased.

15 . The method of claim 1 , wherein the percentage of cells transduced by the viral vector is increased and/or the vector copy number per cell is increased.

16 . The method of claim 1 , wherein the method is carried out in vitro or ex vivo.

17 . The method of claim 1 , wherein the CsH is at a concentration of about 1-50 μM.

18 . The method of claim 1 , comprising a further step of enriching the population for CD34+/CD38-cells.

19 . The method of claim 1 , wherein the method comprises the steps of:

(a) culturing the population of HSPCs in the presence of UM171;

(b) contacting the population of HSPCs with CsH;

(c) transducing the population of HSPCs with an IDLV comprising a donor template;

(d) contacting the population of HSPCs with a CRISPR/Cas system.

20 . The method of claim 19 , wherein the CRISPR/Cas system comprises a ribonucleoprotein (RNP) comprising Cas protein and gRNA.

21 . The method of claim 1 , wherein the HSPCs are from umbilical cord blood, mobilized peripheral blood, or bone marrow.

22 . The method of claim 1 , wherein the HSPCs are CD34+CD38-HSPCs.

Assignments (2)
CHANGE OF NAME Recorded Jul 13, 2024
From: FONDAZIONE TELETHON
To: FONDAZIONE TELETHON ETS
Reel/Frame 068298/0069 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 3, 2024
From: KAJASTE-RUDNITSKI, ANNA CHRISTINA; PETRILLO, CAROLINA; GENTNER, BERNHARD RUDOLPH; NALDINI, LUIGI; GENOVESE, PIETRO; SCHIROLI, GIULIA
To: OSPEDALE SAN RAFFAELE S.R.L.; FONDAZIONE TELETHON
Reel/Frame 066996/0528 →
Priority Claims (1)
GB 1706394 · Apr 21, 2017 · national
Continuity (2)
Division 16606633
Related Publication 20240350661A1 · Oct 24, 2024
References Cited (42)
US 10391201B2 · Kajaste-Rudnitski et al. · 2019 [cited by applicant]
US 20130323301A1 · Gruber et al. · 2013 [cited by applicant]
US 20150352228A1 · Torbett et al. · 2015 [cited by applicant]
WO WO2004032969 · 2004 [cited by applicant]
WO WO2004098531 · 2004 [cited by applicant]
WO WO2014109728 · 2014 [cited by applicant]
WO WO2015059674 · 2015 [cited by applicant]
WO WO2015162594 · 2015 [cited by applicant]
WO WO2016182959 · 2016 [cited by applicant]
Cheng, H., et al., 2020, New paradigms on hematopoietic stem cell differentiation, Protein Cell 11(1):34-44. [cited by examiner]
Reichert, D., et al., Oct. 2015, Phenotypic, Morphological and Adhesive Differences of Human Hematopoietic Progenitor Cells Cultured on Murine versus Human Mesenchymal Stromal Cells, Sci. Reports 5:15680, pp. 1-14. [cited by examiner]
Randall, T. D., and I. L. Weissman, 1998, Characeterizaiton of a Population of Cells in the Bone Marrow that Phenotypically Mimics Hematopoietic Stem Cells: Resting Stem Cells or Mystery Population?, Stem Cells 16:38-48. [cited by examiner]
Fujita et al., Cyclophilin A-independent replication of a human immunodeficiency virus type 1 isolate; Journal of Virology 75:10527-10531 (2001). [cited by applicant]
Cornilescu et al., Structure Analysis of the N-Terminal Domain of the Human T-cell Leukemia Virus Capsid Protein; J Mol Biol. 306:783-797 (2000). [cited by applicant]
Kahl et al., Tissue-specific restriction of cyclophilin A-independent HIV-1 and SIV-derived lentiviral vectors; Gene Therapy 15:1079-1089 (2008). [cited by applicant]
Noser et al., Cyclosporine increases human immunodeficiency virus type 1 vector transduction; Journal of Virology 80:7769-7774 (2006). [cited by applicant]
Petrillo et al., Dissectiong Immunomodulatory Relief of Lentiviral Restriction in human Hematopoietic Stem and Progenitor Cells . . . ; Molec. Ther. 22:205 (2014). [cited by applicant]
Santoni De Sio et al., Lentiviral vector gene transfer is limited by the proteasome at postentry steps in various . . . ; Stem Cells 26:2142-2152 (2008). [cited by applicant]
Zhang Y., Rational Design of Cyclosporin A Derivatives for selective enzyme Inhibition; Dissertation, Martn Luther Universität Halle-Wittenberg (2001). [cited by applicant]
Doulatov et al., Revised map of the human progenitor hierarchy show the origin of mcarophages and enedritic cells in early lymphoid . . . ; Nature Immunology 11:585-59 (2010). [cited by applicant]
Uchida et al., High-efficiency Transudction of Rhesus Hematopoietic Repopulating Cells by a Modified HIV1-based Lentiviral Vector; Molecular Therapy 20:1882-1892 (2012). [cited by applicant]
Notta et al., Isolation og single human hematopoietic stem cells capable of long-term multilineage engraftment; Science 333:218 (2011). [cited by applicant]
Hatziloannou et al., Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5α; Proc. National Academy of Science 101:10774-10779 (2004). [cited by applicant]
Zonari et al., Incremental Innovation of Ex Vivo Hematopoietic Stem Cell Engineering to Expand Clinical Gene Therapy Applications; Blood 128:4707 (2016). [cited by applicant]
Ma et al., Discovery of cyclosporine A and its analogs as broad-spectrum anti-influenza drugs with a high in vitro genetic barrier of . . . ; Antiviral Research 133:62-72 (2016). [cited by applicant]
Petrillo et al., Novel Molecular and Functional Insight into Cyclosporine-Mediated Enhancement of Human Hematopoietic Stem Cell Gene Therapy; Molec. Ther. 25:340 (2017). [cited by applicant]
Petrillo et al., Cyclosporine H Overcomes Innate Immune Restrictions to Improve Lentiviral Transduction and Gene Editing in Human . . . ; Cell Stem Cell 23:820-832 (2018). [cited by applicant]
Jia et al., SIRT1 suppresses PMA and ionomycin-induced ICAM-1 expression in endothelial cells; Sci. China Life Sci. 56:19-25 (2013). [cited by applicant]
Bulli, L. et al., Complex Interplay Between HIV-1 Capsid and MX2-Independent Alpha Interferon-Induced Antiviral Factors; J. Virol. 90:7469-7480 (2016). [cited by applicant]
Cheng, H. et al., New Paradigms on Hematopoietic Stem Cell Differentiation; Protein Cell 11:34-44 (2020). [cited by applicant]
Bouchard, M. et al., Activation and inhibition of cellular calcium and tyrosine kinase signaling pathways identify targets of the JBx protein . . . ; J. Virol. 77:7713-7719 (2003). [cited by applicant]
Zonari, E. et al., Efficient ex vivo engineering and expansion of highly purified human hematopoietic stem and progenitor cell populations . . . ; Stem Cell Rep. 8:977-990 (2017). [cited by applicant]
De Iaco et al., Cyclophilin A promotes HIV-1 reverse transcription but its effect on transduction correlates best with its effect on nuclear entry . . . ; Retrovirol. 11:11 (2014). [cited by applicant]
Kajaste-Rudnitski et al., Cellular Innate Immunity and Restriction of Viral Infection: Implications for Lentiviral Gene Therapy . . . ; Human Gene Ther. 26:201-209 (2015). [cited by applicant]
Liu et al., The Interferon-Inducible MxB Protein Inhibits HIV-1 Infection; Cell Host & Microbe 14:398-410 (2013). [cited by applicant]
Montini et al., Hematopoietic stem cell gene transfer in a tumor-prone mouse model uncovers low genotoxicity . . . ; Nature Biotechnol. 24:687-696 (2006). [cited by applicant]
Petrillo et al., Cyclosporin A and Rapamycin Relieve Distinct Lentiviral Restriction Blocks in Hematopoietic Stem and Progenitor Cells; Molec. Ther. 23:352-362 (2015). [cited by applicant]
Rits et al., Efficient Transduction of Simian Cells by HIV-1-based Lentiviral Vectors that Contain Mutations in the Capsid Protein; Molec. Ther. 15:930-937 (2007). [cited by applicant]
Sutherland et al., Effects of Cyclosporine A on Lentiviral Transduction of Mouse Hematopoietic Stem Cells and Transplantation . . . ; Blood 110:Abstract 5147 (2007). [cited by applicant]
Uchida et al., Optimal conditions for lentiviral transduction of engrafting human CD34+ cells; Gene Ther. 18:1078-1086 (2011). [cited by applicant]
Uchida et al., Efficient transduction of human hematopoietic repopulating cells with a chimeric HIV1-based vector including SIV capsid; Exper. Hematol. 41:779-788 (2013). [cited by applicant]
Wang et al., Rapamycin relieves lentiviral vector transduction resistance in human and mouse hematopoietic stem cells; Blood 124:913-923 (2014). [cited by applicant]