Rapid microbial detection and antimicrobial susceptibility testing
A method for the detection of microorganisms in a sample comprising contacting said sample with a biosensor concentration module, allowing microorganisms to grow for a first period of time and detecting growth of discrete microorganisms as an indication of the presence of said microorganisms.
1. A method for measuring the growth of a plurality of individual microorganisms in a sample comprising: contacting said sample with a biosensor comprising:
a concentration module;
at least one detection surface; and
concentrating said individual microorganisms onto said detection surface,
wherein each said individual microorganism binds to said detection surface in spatially discrete sites;
allowing said individual microorganisms to grow for a first period of time; and
detecting growth of individual microorganisms as an indication of the presence of said microorganisms.
2. A method according to claim 1 further comprising adding at least one bioactive agent during said growth conditions.
3. A method according to claim 2 wherein a plurality of bioactive agents are added.
4. A method according to claim 2 or 3 wherein said agent(s) are added after a first growth period.
5. A method according to claim 4 further comprising measuring growth of said individual microorganisms prior to said addition of said agent(s); and measuring growth of said individual microorganisms after a second growth period in the presence of said agent(s).
6. A method according to claim 2 or 3 wherein said agent(s) are added prior to said first growth period.
7. A method for measuring the growth of a plurality of individual microorganisms in a sample comprising: contacting said sample with a biosensor comprising:
a concentration module; and
at least one detection surface;
concentrating said individual microorganisms onto said detection surface, wherein each said individual microorganism binds to said detection surface in spatially discrete sites;
allowing said individual microorganisms to a grow for a first period of time; adding at least one bioactive agent to said microorganisms;
allowing said individual microorganisms to grow for a second period of time;
detecting growth of individual microorganisms as an indication of the presence of said microorganisms.
8. A method according to claim 7 wherein a plurality of bioactive agents are added.
9. A method according to claim 1 or 7 wherein said concentration module utilizes a method selected from the group consisting of electrophoresis, centrifugation, filtration and dielectrophoresis.
10. A method according to claim 1 or 7 wherein said detection surface comprises a plurality of individual detection sites.
11. A method according to claim 1 or 7 wherein said detection surface comprises selective capture ligands.
12. A method according to claim 1 or 7 wherein said detection surface comprises a nonspecific surface.
13. A method according to claim 11 wherein said plurality of individual detection sites each comprise a different selective capture ligand.
14. A method according to claim 11 wherein said plurality of individual detection sites each comprise a non-specific surface.
15. A method according to claim 1 or 7 wherein the identity of at least one microorganism is established.
16. A method according to claim 1 or 7 wherein said detecting is done by monitoring alterations in the physical area on said surface associated with an individual microorganism as it grows.
17. A method according to claim 1 or 7 wherein said detecting is done by detecting the presence of daughter cells at said spatially discrete sites.
18. A method according to claim 1 or 7 wherein said detecting further comprises adding a label, and said detection is done by monitoring alterations in the binding of said label to said individual microorganism as it grows.
19. A method according to claim 17 wherein said label is a mortal stain.
20. A method according to claim 1 or 7 wherein said biosensor comprises a plurality of channels, each comprising a detection surface.
21. A method according to claim 1 , 7 or 19 wherein said biosensor further comprises a plurality of storage modules.
22. A method according to claim 20 wherein said storage modules each comprise a different bioactive agent.
23. A method of diagnosing a microbial infection in a patient comprising:
providing a matrix of time versus kill curves for a panel of antimicrobial agents against a panel of microorganisms;
contacting a sample from said patient with a biosensor comprising:
a concentration module; and
at least one detection surface;
concentrating patient individual microorganisms from said sample on said detection surface, wherein each said patient individual microorganism individually binds to said detection surface in spatially discrete sites;
detecting the growth of said patient individual microorganisms in the presence of said panel of antimicrobial agents;
identifying at least one of said patient individual microorganisms by comparing its growth to said matrix.
24. A method for the identification of individual microorganisms in a sample comprising:
contacting said sample with a biosensor comprising:
a concentration module; and
at least one detection surface;
concentrating said individual microorganisms onto said detection surface, wherein each said individual microorganism individually binds to said detection surface in spatially discrete sites;
subjecting said individual microorganisms to a first growth period; adding at least one antimicrobial agent to said detection surface;
subjecting said individual microorganisms to a second growth period;
detecting alterations in growth of individual microorganisms after the addition of said agent;
and identifying at least one of said individual microorganisms on the basis of susceptibility to said agent.
25. A method according to claim 1 , wherein the detection of one or more divisions of individual microorganisms into two microorganisms is an indication of the presence of said microorganisms.