Dynamic monitoring of activation of G-protein coupled receptor (GPCR) and receptor tyrosine kinase (RTK) in living cells using real-time microelectronic cell sensing technology
The present application includes systems and methods for identifying a compound capable of interacting with a G-Protein Coupled Receptor (GPCR) or Receptor Tyrosine Kinase (RTK) including providing a device capable of measuring cell-substrate impedance operably connected to an impedance analyzer, adding test cells expressing a GPCR or a RTK to wells of the device, measuring first impedances of the wells and optionally determining first cell indices from the first impedances, adding a compound to at least one well containing test cells to form at least one compound well and adding a vehicle control to at least another well containing test cells to form at least one control well, measuring second impedances of the compound well and the control well and optionally determining second cell indices from the second impedances, determining the change in the impedance or cell index for the compound well and the one control well, comparing the change in impedance or cell index between the compound well and the control well, and identifying the compound interacts with the GPCR or RTK if the comparison demonstrates a significant difference between the change in impedance or cell index of the compound well and the control well.
1. A method of identifying a compound capable of interacting with a G-Protein Coupled Receptor (GPCR) comprising:
a) providing a device capable of measuring cell-substrate impedance, wherein said device comprises at least two wells, each comprising a conductive electrode array on a non-conductive substrate further wherein said device is operably connected to an impedance analyzer and a computer;
b) adding test cells to at least one of said at least two wells for attachment to said conductive electrode array to form at least one test well, and adding control cells to at least another well for attachment to said conductive electrode array to form at least one control well, wherein said test cells express a GPCR and said control cells do not express said GPCR or express said GPCR at a lesser level than said test cells;
c) determining first cell indices from first impedances, wherein said first impedances are cell-substrate impedances measured from said at least one test well and from said at least one control well immediately preceding step d);
d) adding a compound to said at least one test well and to said at least one control well;
e) determining second cell indices from second impedances wherein said second impedances are cell-substrate impedances measured from said at least one test well and from said at least one control well after step d);
f) determining the change in cell index of said at least one test well by comparing said second cell index of said at least one test well to said first cell index of said at least one test well, and determining the change in cell index of said at least one control well by comparing said second cell index of said at least one control well to said first cell index of the said at least one control well;
g) comparing said changes in cell index between said at least one test well and said at least one control well; and
h) identifying said compound interacts with said GPCR if said comparison demonstrates at least a 1% difference between said change in cell index for said at least one test well and said change in cell index for said at least one control well.
2. The method according to claim 1 , wherein said device is in the format of a multi-well plate.
3. The method according to claim 1 , wherein said GPCR is selected from the group consisting of a recombinant GPCR, an endogenous GPCR, an orphan GPCR, a constitutively active GPCR, and chimeric GPCR, and an chimeric receptor comprising a GPCR property.
4. The method according to claim 1 , wherein said cell index is a normalized cell index wherein normalization is at a time point a short time before adding said compound or said vehicle control, wherein the said short time is selected from the group consisting of less than 1 minute, less than 2 minutes, less than 5 minutes, less than 10 minutes, less than 30 minutes, less than 1 hour, less than 2 hours, less than 5 hours, less than 10 hours, and less than 24 hours.
5. The method according to claim 1 , wherein each of said first impedances are a series of impedance measurements prior to said adding said compound and each of said first cell indices are a series of cell indices, wherein each of said first cell indices corresponds to a distinct impedance measurement within said series of impedance measurements.
6. The method according to claim 1 , wherein said measuring first impedances occurs at a time point selected from the group consisting of less than 1 minute, less than 5 minutes, less than 30 minutes, less than 1 hour, less 2 hours, less than 5 hours, less than 10 hours, and less than 24 hours prior to said adding said compound or said vehicle control.
7. The method according to claim 1 , wherein said compound is selected from a group consisting of an inorganic molecule, peptide and protein.
8. The method according to claim 1 , wherein each of said second impedances are a series of impedance measurements after said adding said compound and each of said second cell indices are series of cell indices, wherein each of said second cell indices corresponds to a distinct second impedance measurement within said series of impedance measurements.
9. A method of claim 1 , wherein said measuring said second impedances occurs at a time point selected from the group consisting of more than 1 minute, more than 5 minutes, more than 30 minutes, more than 1 hour, more than 2 hours, more than 5 hours, more than 10 hours, and more than 24 hours after said adding said compound or said vehicle control.
10. The method according to claim 1 , wherein said changes in cell indices are absolute changes in cell indices.
11. The method according to claim 1 , wherein said change in cell indices are relative change in cell indices.
12. The method according to claim 1 , wherein said compound is identified as an agonist if said comparison indicates a significant change comprising an increase in cell index for said test well after said compound is added and an inverse agonist if said comparison indicates a significant change in cell index comprising a decrease for said test well after said compound is added.
13. The method according to claim 1 , wherein said compound is selected from the group consisting of a ligand, an agonist, an inverse agonist, an antagonist and an inhibitor.
14. The method according to claim 1 , wherein two compounds are added to said compound well at the same time or at different times prior to measuring the second impedance of said compound well.
15. The method according to claim 14 , wherein said two compounds are added at different times.
16. The method according to claim 15 , wherein the first added compound is an antagonist for said GPCR and the second added compound is an agonist for said GPCR.
17. The method according to claim 16 , wherein said antagonist for said GPCR is added to compound wells at different concentrations and said agonist is added to said compound wells at a same concentration.
18. The method according to claim 17 , further comprising determining a dose dependent response curve for said antagonist and determining for each well, a maximum change in area under the cell-index curve.
19. The method according to claim 18 , further comprising determining an IC50 of said antagonist.
20. The method according to claim 16 , wherein said antagonist is added to compound wells at a same concentration and said agonist is added to said compound wells at different concentrations.
21. The method according to claim 20 , further comprising determining a dose dependent response curve for said agonist and determining for each well, a maximum change in area under the cell-index curve.
22. The method according to claim 21 , further comprising determining an IC50 of said agonist.
23. The method according to claim 1 , wherein said difference is at least 10%.