IP Library Granted Patent US 8,410,179
Granted Patent B2
US 8,410,179 · App. 13/420,062 · Granted Apr 2, 2013

Cis, 3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-derivatives, substantially enantiomerically pure compositions and methods

Inventors: Brian J. Carroll (Gig Harbor, WA); Gary Darland (Gig Harbor, WA); Anuradha Desai (Gig Harbor, WA); Veera Konda (Gig Harbor, WA); Clinton J. Dahlberg (Port Orchard, WA); Jan Urban (Gig Harbor, WA)
Assignee: KinDex Therapeutics, LLC
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Quick Facts
Patent No.
US 8,410,179
App. No.
13/420,062
Granted
Apr 2, 2013
Kind
B2
Abstract

The present application provides cis 3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one derivatives and substantially enantiomerically pure compositions thereof. These derivatives include (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one, (−)-(4R,5S)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one, and salts and crystals thereof. The application further provides methods of using the disclosed compounds and compositions to activate PPARγ, activate GPR120, inhibit inflammation, and treat conditions responsive to PPARγ modulation, conditions responsive to GPR120 modulation, and metabolic disturbances such as diabetes.

Claims (569)

1. A substantially enantiomerically pure composition of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt having the structure:

or a crystal thereof.

2. The substantially enantiomerically pure composition of claim 1 , wherein the crystal thereof has a monoclinic space group P 21 21 2, and unit cell dimensions of a=23.3110(9) Å, α=90°, b=28.9052(12) Å, β=90°, c=13.6845(5) Å, and γ=90°.

3. The substantially enantiomerically pure composition of claim 2 , wherein the crystal thereof has the three-dimensional atomic coordinates (×10 4 ) and equivalent isotropic displacement parameters (Å 2 ×10 3 ) set forth in the following table:

x

y

z

U(eq)

C(1)

7524(2)

5106(1)

 9242(3)

28(1)

C(2)

8024(2)

4959(1)

 9927(3)

35(1)

C(3)

7914(2)

4506(1)

10298(3)

33(1)

C(4)

7453(2)

4302(1)

 9756(3)

34(1)

C(5)

7216(2)

4643(1)

 8998(3)

33(1)

C(6)

7115(2)

5428(1)

 9834(3)

36(1)

C(7)

6892(4)

5255(2)

10809(5)

72(2)

C(8)

6566(3)

5590(2)

11380(4)

50(1)

C(9)

6337(3)

5389(3)

12359(5)

68(2)

C(10)

5872(6)

5053(5)

12195(8)

148(6) 

C(11)

6796(4)

5225(3)

13006(6)

91(3)

C(12)

8204(2)

4288(1)

11112(3)

41(1)

C(13)

8714(3)

4528(2)

11556(5)

56(2)

C(14)

8911(3)

4318(2)

12552(5)

60(2)

C(15)

8487(5)

4435(3)

13312(5)

93(3)

C(16)

9491(5)

4512(4)

 12823(11)

159(6) 

C(17)

7316(2)

4476(2)

 7954(3)

39(1)

C(18)

6870(2)

4671(2)

 7236(4)

44(1)

C(19)

6917(3)

4494(2)

 6194(4)

54(1)

C(20)

6405(3)

4629(3)

 5597(5)

74(2)

C(21)

7461(4)

4659(3)

 5703(5)

82(2)

O(1)

7752(1)

5356(1)

 8454(2)

34(1)

O(2)

8426(2)

5226(1)

10086(3)

42(1)

O(3)

7256(2)

3907(1)

 9822(3)

43(1)

O(4)

7004(1)

5799(1)

 9500(2)

38(1)

O(5)

8047(2)

3916(1)

11452(3)

60(1)

C(22)

7596(2)

6286(1)

 5706(3)

32(1)

C(23)

7561(2)

6826(2)

 5706(4)

39(1)

C(24)

7773(2)

6981(2)

 6619(3)

35(1)

C(25)

8071(2)

6608(2)

 7085(3)

30(1)

C(26)

8089(2)

6191(2)

 6411(3)

33(1)

C(27)

7030(2)

6134(1)

 6157(3)

35(1)

C(28)

6532(2)

6085(2)

 5470(4)

44(1)

C(29)

5957(2)

6096(2)

 5957(4)

50(1)

C(30)

5435(2)

6099(2)

 5260(4)

54(1)

C(31)

4893(3)

6202(3)

 5806(6)

75(2)

C(32)

5377(3)

5650(3)

 4727(5)

69(2)

C(33)

8688(2)

6152(2)

 5906(4)

43(1)

C(34)

8850(3)

5656(2)

 5614(4)

53(1)

C(35)

8940(3)

5313(2)

 6443(5)

60(2)

C(36)

9068(4)

4832(2)

 5990(6)

77(2)

C(37)

9412(4)

5462(3)

 7133(5)

84(2)

C(38)

7655(2)

7431(2)

 7050(3)

39(1)

C(39)

7350(4)

7795(2)

 6449(5)

70(2)

C(40)

7632(4)

8042(3)

 5651(7)

87(2)

C(41)

7251(5)

8330(3)

 5056(7)

108(3) 

C(42)

8045(6)

8295(5)

  6214(12)

172(6) 

O(6)

7666(2)

6098(1)

 4775(2)

41(1)

O(7)

7349(2)

7029(1)

 5011(3)

52(1)

O(8)

8285(1)

6599(1)

 7913(2)

34(1)

O(9)

6986(1)

6066(1)

 7050(2)

38(1)

O(10)

7759(2)

7512(1)

 7914(3)

45(1)

C(43)

9206(2)

2357(2)

11169(3)

32(1)

C(44)

9254(2)

2831(2)

10658(4)

36(1)

C(45)

9825(2)

2899(2)

10303(3)

34(1)

C(46)

10172(2) 

2515(1)

10586(3)

32(1)

C(47)

9823(2)

2157(1)

11149(3)

32(1)

C(48)

8995(2)

2406(2)

12207(3)

37(1)

C(49)

9293(3)

2753(2)

12844(4)

50(1)

C(50)

9393(4)

2593(2)

13886(5)

74(2)

C(51)

9820(5)

2928(3)

14482(7)

106(3) 

C(52)

9616(8)

3368(3)

14555(6)

167(7) 

C(53)

9965(6)

2714(4)

15395(7)

115(3) 

C(54)

10026(2) 

3288(2)

 9736(3)

33(1)

C(55)

9587(2)

3651(2)

 9436(4)

45(1)

C(56)

9221(3)

3489(2)

 8539(5)

59(2)

C(57)

8725(3)

3809(3)

 8372(6)

82(2)

C(58)

9567(4)

3424(4)

 7645(6)

108(3) 

C(59)

9882(2)

1677(2)

10713(3)

36(1)

C(60)

9653(2)

1295(2)

11353(4)

42(1)

C(61)

9602(3)

 834(2)

10846(5)

67(2)

C(62)

9336(4)

 470(2)

11526(6)

81(2)

C(63)

10172(5) 

 682(2)

10454(8)

125(5) 

O(11)

8798(1)

2080(1)

10663(2)

37(1)

O(12)

8825(1)

3073(1)

10574(3)

53(1)

O(13)

10687(1) 

2447(1)

10439(3)

44(1)

O(14)

8606(2)

2161(1)

12507(2)

45(1)

O(15)

10531(1) 

3326(1)

 9471(2)

35(1)

C(64)

6773(2)

7178(2)

12470(4)

47(1)

C(65)

7186(2)

6744(2)

12389(3)

40(1)

C(66)

7458(2)

6767(1)

11475(3)

31(1)

C(67)

7333(2)

7202(2)

11015(3)

34(1)

C(68)

7027(2)

7519(2)

11725(4)

44(1)

C(69)

6192(3)

6998(2)

12142(4)

54(1)

C(70)

5847(3)

6754(3)

12876(6)

72(2)

C(71)

5325(4)

6482(3)

12490(7)

95(3)

C(72)

4752(4)

6633(4)

12595(7)

100(3) 

C(73)

4721(6)

7091(4)

12195(9)

135(4) 

C(74)

4301(5)

6345(7)

 12259(12)

174(7) 

C(75)

7464(3)

7874(2)

12165(4)

49(1)

C(76)

8000(3)

7660(2)

12596(4)

50(1)

C(77)

8409(3)

7997(2)

13104(5)

54(1)

C(78)

8696(3)

8341(2)

12393(5)

66(2)

C(79)

8864(3)

7718(3)

13668(7)

89(3)

C(80)

7868(2)

6439(1)

11068(3)

27(1)

C(81)

8128(2)

6080(1)

11742(3)

34(1)

C(82)

8581(2)

6290(2)

12429(3)

36(1)

C(83)

9073(2)

6516(2)

11867(4)

50(1)

C(84)

8812(2)

5905(2)

13095(4)

49(1)

O(16)

6741(2)

7354(1)

13432(3)

56(1)

O(17)

7214(2)

6461(1)

13049(2)

46(1)

O(18)

7471(1)

7341(1)

10200(2)

35(1)

O(19)

6045(2)

7027(1)

11291(3)

55(1)

O(20)

8024(1)

6460(1)

10215(2)

31(1)

O(21)

6520(2)

3179(1)

10191(3)

50(1)

O(22)

9560(4)

5349(3)

 10090(10)

96(4)

K(1)

8740(1)

5960(1)

 9107(1)

32(1)

K(2)

7682(1)

3139(1)

10764(1)

32(1)

K(3)

7153(1)

6676(1)

 8756(1)

28(1)

K(4)

6484(1)

2234(1)

10709(1)

33(1)

4. The substantially enantiomerically pure composition of 1 , further comprising a pharmaceutically acceptable carrier.

5. A method of treating diabetes in a subject in need thereof comprising administering a therapeutically effective amount of a substantially enantiomerically pure composition of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one having the structure:

or a salt or crystal thereof.

6. The method of claim 5 , wherein the salt thereof is selected from the group consisting of potassium, aluminum, calcium, copper, guanidinium, iron, lithium, magnesium, sodium, zinc, cinchonidine, cinchonine, and diethanolamine salts.

7. The method of claim 5 , wherein the substantially enantiomerically pure composition further comprises a pharmaceutically acceptable carrier.

8. The substantially enantiomerically pure composition according to claim 1 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt or a crystal thereof is 98% or higher.

9. The substantially enantiomerically pure composition according to claim 1 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt or a crystal thereof is 99% or higher.

10. The substantially enantiomerically pure composition according to claim 1 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one potassium salt or a crystal thereof is 99.5% or higher.

11. The method according to claim 5 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one or a salt or crystal thereof is 98% or higher.

12. The method according to claim 5 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one or a salt or crystal thereof is 99% or higher.

13. The method according to claim 5 , wherein the enantiomerical purity of (+)-(4S,5R)-3,4-dihydroxy-2-(3-methylbutanoyl)-5-(3-methylbutyl)-4-(4-methylpentanoyl)cyclopent-2-en-1-one or a salt or crystal thereof is 99.5% or higher.

Assignments (2)
CHANGE OF NAME Recorded Jul 30, 2014
From: KINDEX THERAPEUTICS, LLC
To: KINDEX PHARMACEUTICALS, INC.
Reel/Frame 033447/0029 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 3, 2012
From: CARROLL, BRIAN J.; DARLAND, GARY; DESAI, ANURADHA; KONDA, VEERA; DAHLBERG, CLINTON J.; URBAN, JAN
To: KINDEX THERAPEUTICS, LLC
Reel/Frame 029392/0144 →
Continuity (5)
Continuation 13284852 · Oct 28, 2011
Provisional Application 61408572 · Oct 30, 2010
Provisional Application 61448150 · Mar 1, 2011
Provisional Application 61508434 · Jul 15, 2011
Related Publication 20130018105A1 · Jan 17, 2013