Compstatin analogs with improved pharmacokinetic properties
Compounds comprising peptides capable of binding C3 protein and inhibiting complement activation are disclosed. The compounds comprise compstatin analogs in which the N-terminus contains an added or substituted component that improves (1) the peptide's binding affinity to C3 or its fragments, (2) the peptide's solubility in aqueous liquids, (3) the peptide's plasma stability, (4) the peptide's in vivo retention and/or (5) the peptide's bioavailability, as compared with an unmodified compstatin peptide under equivalent conditions. Pharmaceutical compositions and methods of using the compounds are also disclosed.
1. A compound comprising a peptide having a sequence of SEQ ID NO:29, which is:
Xaa1-Xaa2-Cys-Val-Xaa3-Gln-Xaa4-Xaa5-Gly-Xaa6-His-Xaa7-Cys-Xaa8, in which Gly between Xaa5 and Xaa6 optionally is modified to constrain the backbone conformation;
wherein:
Xaa1 is absent or is selected from the group consisting of D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla, Thr or Tyr;
Xaa2 is Ile when Xaa1 is D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla or Thr, or either Ile or Gly when Xaa1 is Tyr, or Ac-Trp when Xaa1 is absent;
Xaa3 is Trp or an analog of Trp, wherein the analog of Trp has increased hydrophobic character as compared with Trp;
Xaa4 is Asp;
Xaa5 is Trp or an analog of Trp comprising a chemical modification to its indole ring wherein the chemical modification increases the hydrogen bond potential of the indole ring;
Xaa6 is His, Ala, Phe or Trp;
Xaa7 is Arg; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile, wherein a carboxy terminal —OH of any of the Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile optionally is replaced by —NH 2 , and
the peptide is cyclic via a Cys-Cys disulfide or thioether bond.
2. The compound of claim 1 , wherein:
the Gly at position 8 is N-methylated;
Xaa1 is D-Tyr or Sar;
Xaa2 is Ile;
Xaa3 is Trp, 1-methyl-Trp or 1-formyl-Trp;
Xaa5 is Trp or halogenated Trp;
Xaa6 is Ala; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile with optional replacement of the carboxy terminal —OH with —NH 2 .
3. The compound of claim 2 , wherein Xaa8 is Ile, N-methyl Thr or N-methyl Ile with optional replacement of the carboxy terminal —OH with —NH 2 .
4. The compound of claim 3 , which comprises SEQ ID NO:7 or SEQ ID NO:18.
5. The compound of claim 1 , further comprising an additional component that extends the in vivo retention of the compound.
6. The compound of claim 5 , wherein the additional component is selected from:
(a) polyethylene glycol (PEG);
(b) an albumin binding small molecule; and
(c) an albumin binding peptide.
7. The compound of claim 6 , wherein the albumin binding small molecule is attached to a terminus of the peptide, either directly or with a spacer between the peptide and the albumin binding small molecule.
8. The compound of claim 1 , disposed within a pharmaceutical composition comprising a pharmaceutically acceptable carrier for the compound.
9. A compound comprising a peptide having a sequence of SEQ ID NO:29, which is:
Xaa1-Xaa2-Cys-Val-Xaa3-Gln-Xaa4-Xaa5-Gly-Xaa6-His-Xaa7-Cys-Xaa8, in which Gly between Xaa5 and Xaa6 optionally is modified to constrain the backbone conformation;
wherein:
Xaa1 is absent or is selected from the group consisting of D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla, Thr or Tyr;
Xaa2 is Ile when Xaa1 is D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla or Thr, or either Ile or Gly when Xaa1 is Tyr, or Ac-Trp when Xaa1 is absent;
Xaa3 is Trp or an analog of Trp, wherein the analog of Trp has increased hydrophobic character as compared with Trp;
Xaa4 is Asn;
Xaa5 is Trp or an analog of Trp comprising a chemical modification to its indole ring wherein the chemical modification increases the hydrogen bond potential of the indole ring;
Xaa6 is His, Ala, Phe or Trp;
Xaa7 is Arg or Orn; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile, wherein a carboxy terminal —OH of any of the Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile optionally is replaced by —NH 2 , and
the peptide is cyclic via a Cys-Cys disulfide or thioether bond.
10. The compound of claim 9 , wherein:
the Gly at position 8 is N-methylated;
Xaa1 is D-Tyr or Sar;
Xaa2 is Ile;
Xaa3 is Trp, 1-methyl-Trp or 1-formyl-Trp;
Xaa5 is Trp or halogenated Trp;
Xaa6 is Ala; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile with optional replacement of the carboxy terminal —OH with —NH 2 .
11. The compound of claim 9 , further comprising an additional component that extends the in vivo retention of the compound.
12. The compound of claim 11 , wherein the additional component is selected from:
(a) polyethylene glycol (PEG);
(b) an albumin binding small molecule; and
(c) an albumin binding peptide.
13. The compound of claim 12 , wherein the albumin binding small molecule is attached to a terminus of the peptide, either directly or with a spacer between the peptide and the albumin binding small molecule.
14. The compound of claim 9 , disposed within a pharmaceutical composition comprising a pharmaceutically acceptable carrier for the compound.
15. A compound comprising a peptide having a sequence of SEQ ID NO:29, which is:
Xaa1-Xaa2-Cys-Val-Xaa3-Gln-Xaa4-Xaa5-Gly-Xaa6-His-Xaa7-Cys-Xaa8, in which Gly between Xaa5 and Xaa6 optionally is modified to constrain the backbone conformation;
wherein:
Xaa1 is absent or is selected from the group consisting of D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla, Thr or Tyr;
Xaa2 is Ile when Xaa1 is D-Tyr, D-Phe, Tyr(Me), D-Trp, D-Cha, Cha, Phe, Sar, Arg, mPhe, mVal, Trp, mIle, D-Ala, mAla or Thr, or either Ile or Gly when Xaa1 is Tyr, or Ac-Trp when Xaa1 is absent;
Xaa3 is Trp or an analog of Trp, wherein the analog of Trp has increased hydrophobic character as compared with Trp;
Xaa4 is Asp or Asn;
Xaa5 is Trp or an analog of Trp comprising a chemical modification to its indole ring wherein the chemical modification increases the hydrogen bond potential of the indole ring;
Xaa6 is His, Ala, Phe or Trp;
Xaa7 is Orn; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile, wherein a carboxy terminal —OH of any of the Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile optionally is replaced by —NH 2 , and
the peptide is cyclic via a Cys-Cys disulfide or thioether bond.
16. The compound of claim 15 , wherein:
the Gly at position 8 is N-methylated;
Xaa1 is D-Tyr or Sar;
Xaa2 is Ile;
Xaa3 is Trp, 1-methyl-Trp or 1-formyl-Trp;
Xaa5 is Trp or halogenated Trp;
Xaa6 is Ala; and
Xaa8 is Thr, Ile, Leu, Nle, N-methyl Thr or N-methyl Ile with optional replacement of the carboxy terminal —OH with —NH 2 .
17. The compound of claim 15 , further comprising an additional component that extends the in vivo retention of the compound.
18. The compound of claim 17 , wherein the additional component is selected from:
(a) polyethylene glycol (PEG);
(b) an albumin binding small molecule; and
(c) an albumin binding peptide.
19. The compound of claim 18 , wherein the albumin binding small molecule is attached to a terminus of the peptide, either directly or with a spacer between the peptide and the albumin binding small molecule.
20. The compound of claim 15 , disposed within a pharmaceutical composition comprising a pharmaceutically acceptable carrier for the compound.