Monoclonal antibodies against claudin-18 for treatment of cancer
The present invention provides antibodies useful as therapeutics for treating and/or preventing diseases associated with cells expressing CLD18, including tumor-related diseases such as gastric cancer, esophageal cancer, pancreatic cancer, lung cancer, ovarian cancer, colon cancer, hepatic cancer, head-neck cancer, and cancer of the gallbladder.
1. A method of producing an antibody that binds CLD18A2, or an antigen binding fragment thereof, wherein the antibody or fragment binds to CLD18A2 but not to CLD18A1, and mediates killing of cells expressing CLD18A2, the method comprising the steps of:
culturing a host cell transformed with one or more expression vectors encoding the antibody or antigen binding fragment thereof under conditions in which the host cell expresses the antibody or antigen binding fragment thereof; and
harvesting a preparation of the antibody or antigen binding fragment thereof expressed by the cell;
wherein the one or more expression vectors comprise:
(i) a nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-125 of SEQ ID NO: 115, respectively; and a nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 49-53, positions 71-73, and positions 110-118 of SEQ ID NO: 122, respectively;
(ii) a nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 116, respectively; and a nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 121, respectively;
(iii) a nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-124 of SEQ ID NO: 117, respectively; and a nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-52, positions 70-72, and positions 109-117 of SEQ ID NO: 123, respectively;
(iv) a nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 44-51, positions 69-76, and positions 115-125 of SEQ ID NO: 119, respectively; and a nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-122 of SEQ ID NO: 126, respectively; or
(v) a nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 118, respectively; and a nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 125, respectively.
2. The method of claim 1 , wherein the host cell is selected from the group consisting of a CHO cell, NS/0 cell, HEK293 cell, HEK293T cell, plant cell, fungal cell, dendritic cell, B cell, COS cell, K562 cell, HELA cell, yeast cell, and insect cell.
3. The method of claim 1 , wherein the host cell is a CHO cell.
4. The method of claim 1 , wherein the expression vector comprises a promoter sequence, a leader sequence, a translation initiation sequence, a light chain constant region, a heavy chain constant region, 3′ untranslated sequence, a polyadenylation sequence, or a transcription termination sequence.
5. A recombinant nucleic acid comprising a combination of a first and a second nucleic acid sequence,
wherein the combination is selected from the group consisting of:
(i) a first nucleic acid sequence encoding a heavy chain of an antibody comprising heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-125 of SEQ ID NO: 115, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 49-53, positions 71-73, and positions 110-118 of SEQ ID NO: 122, respectively;
(ii) a first nucleic acid sequence encoding a heavy chain of an antibody comprising heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 116, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 121, respectively;
(iii) a first nucleic acid sequence encoding a heavy chain of an antibody comprising heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-124 of SEQ ID NO: 117, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-52, positions 70-72, and positions 109-117 of SEQ ID NO: 123, respectively;
(iv) a first nucleic acid sequence encoding a heavy chain of an antibody comprising heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 44-51, positions 69-76, and positions 115-125 of SEQ ID NO: 119, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-122 of SEQ ID NO: 126, respectively; and
(v) a first nucleic acid sequence encoding a heavy chain of an antibody comprising heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 118, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 125, respectively;
wherein the first and second nucleic acid sequences encode an antibody, or an antigen binding fragment thereof, that binds to CLD18A2.
6. The recombinant nucleic acid of claim 5 , wherein the first nucleic acid sequence encodes a heavy chain variable region comprising an amino acid sequence selected from the group consisting of SEQ ID NO: 132, 133, 134, 135, and 136.
7. The recombinant nucleic acid of claim 5 , wherein the first nucleic acid sequence encodes a human or murine heavy chain constant region.
8. The recombinant nucleic acid of claim 5 , wherein the first nucleic acid sequence is selected from the group consisting of SEQ ID NOs: 100, 101, 102, 104, and 103 or encodes a heavy chain comprising an amino acid sequence selected from the group consisting of SEQ ID NOs: 115, 116, 117, 119, and 118.
9. The recombinant nucleic acid of claim 5 , wherein the first nucleic acid sequence is operatively linked to expression control sequences.
10. A transformed cell comprising the recombinant nucleic acid of claim 5 .
11. The recombinant nucleic acid of claim 5 , wherein the second nucleic acid sequence encodes a light chain variable region comprising an amino acid sequence selected from the group consisting of SEQ ID NO: 139, 138, 140, 143, and 142.
12. The recombinant nucleic acid of claim 5 , wherein the second nucleic acid sequence encodes a human or murine light chain constant region.
13. The recombinant nucleic acid of claim 5 , wherein the second nucleic acid sequence is selected from the group consisting of SEQ ID NOs: 107, 106, 108, 111, and 110 or encodes a light chain comprising an amino acid sequence selected from the group consisting of SEQ ID NOs: 122, 121, 123, 126, and 125.
14. The recombinant nucleic acid of claim 5 , wherein the second nucleic acid sequence is operatively linked to expression control sequences.
15. The transformed cell of claim 10 , wherein the cell is selected from the group consisting of a CHO cell, NS/0 cell, HEK293 cell, HEK293T cell, plant cell, fungal cell, dendritic cell, B cell, COS cell, K562 cell, HELA cell, yeast cell, and insect cell.
16. A method of producing an antibody producing cell, comprising the steps of
a. transforming a cell with an expression vector comprising the nucleic acid of claim 5 ; and
b. obtaining the transformed cell, wherein the transformed cell comprises the nucleic acid sequence encoding a heavy chain of an antibody and the nucleic acid sequence encoding the light chain of the antibody.
17. The recombinant nucleic acid of claim 5 , wherein:
(i) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 132 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 139;
(ii) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 133 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 138;
(iii) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 134 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 140;
(iv) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 136 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 143; or
(v) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 135 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 142.
18. A transformed cell comprising one or more expression vectors, the one or more expression vectors comprising:
(i) a first nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-125 of SEQ ID NO: 115, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 49-53, positions 71-73, and positions 110-118 of SEQ ID NO: 122, respectively;
(ii) a first nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 116, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 121, respectively;
(iii) a first nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-124 of SEQ ID NO: 117, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-52, positions 70-72, and positions 109-117 of SEQ ID NO: 123, respectively;
(iv) a first nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 44-51, positions 69-76, and positions 115-125 of SEQ ID NO: 119, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-122 of SEQ ID NO: 126, respectively; or
(v) a first nucleic acid sequence encoding heavy chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 45-52, positions 70-77, and positions 116-126 of SEQ ID NO: 118, respectively; and a second nucleic acid sequence encoding light chain CDR1, CDR2, and CDR3 regions having the amino acid sequences of positions 47-58, positions 76-78, and positions 115-123 of SEQ ID NO: 125, respectively; and
wherein the first and second nucleic acid sequences encode an antibody, or an antigen binding fragment thereof, that binds to CLD18A2.
19. The transformed cell of claim 18 , wherein the cell is selected from the group consisting of a CHO cell, NS/0 cell, HEK293 cell, HEK293T cell, plant cell, fungal cell, dendritic cell, B cell, COS cell, K562 cell, HELA cell, yeast cell, and insect cell.
20. The transformed cell of claim 18 , wherein:
(i) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 132 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 139;
(ii) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 133 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 138;
(iii) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 134 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 140;
(iv) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 136 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 143; or
(v) the first nucleic acid sequence encodes a V H comprising an amino acid sequence represented by SEQ ID NO: 135 and the second nucleic acid sequence encodes a V L comprising an amino acid sequence represented by SEQ ID NO: 142.
21. An anti-CLD18A2 antibody, or antigen-binding fragment thereof, wherein the antibody, or antigen-binding fragment thereof, binds to CLD18A2 but not to CLD18A1 and mediates killing of cells expressing CLD18A2, wherein the antibody, or antigen-binding fragment thereof, is expressed by the transformed cell of claim 18 .