Systems and methods for self-referenced detection and imaging of sample arrays

1. A system for detecting an array of samples, comprising:

an electromagnetic radiation source;

a sensing surface comprising a two dimensional array having a plurality of rows in a x-direction and a plurality of columns in an orthogonal y-direction, wherein each row comprises a plurality of detectable sample fields each having a detectable sample disposed therein and at least one reference field each having a reference sample disposed therein, wherein a radiation resulting from the plurality of detectable sample fields and the at least one reference field arranged in each respective row interfere to form an interference spectra;

a phase difference generator configured to introduce differences in path lengths of the radiation emitable from the electromagnetic radiation source incident on or resulting from the sensing surface, the phase difference generator introduces the phase difference between the detectable samples and the reference sample disposed in each respective row in the x direction; and

an imaging spectrometer configured to acquire the interference spectra, wherein the imaging spectrometer is a 2D spectrometer comprising a detector and a grating element; and wherein for the detectable samples disposed in each respective row, the detector detects the phase difference introduced in the x direction of each respective row and the grating element is selected to spatially separate images of the detectable samples in the orthogonal y-direction.

2. The system of claim 1 , wherein the reference sample comprises a determined spectral absorption.

3. The system of claim 1 , wherein the reference sample comprises a material having a refractive index above a detectable range.

4. The system of claim 1 , wherein the at least one reference field comprises one or more layers or coatings of metals or dielectric materials.

5. The system of claim 1 , wherein the radiation resulting from the plurality of detectable sample fields and the at least one reference field share a common optical path.

6. The system of claim 1 , wherein the sensing surface comprises two or more reference fields.

7. The system of claim 1 , wherein each row or each column comprises a reference field specific to its respective row or column.

8. A system for detecting and imaging an array of samples, comprising:

a broadband light source configured to illuminate an array of samples;

an optical engine comprising:

a surface plasmon resonance sensing surface comprising a two dimensional array having a plurality of rows in a x-direction and a plurality of columns in an orthogonal y-direction, wherein each row comprises a plurality of detectable sample fields each having a detectable sample disposed therein and at least one reference field each having a reference sample disposed therein, wherein a radiation resulting from the plurality of detectable sample fields and the at least one reference field arranged in each respective row interfere to form an interference spectra;

a phase difference generator configured to introduce differences in pathlengths of the radiation emitable from the broadband light source incident on or resulting from the sensing surface, the phase difference generator introduces the phase difference between the detectable samples and the reference sample disposed in each respective row in the x-direction;

an image acquisition unit configured to acquire image data, the image data comprising the interference spectra; and

a signal processing unit configured to process the acquired image data, wherein the image acquisition unit comprising a detector and a grating element, and for the detectable samples disposed in each respective row, the detector detects the phase difference introduced in the x-direction of each respective row and the grating element is configured to spatial separate images of the detectable samples in the orthogonal y-direction.

9. The system of claim 1 , wherein the reference sample comprises a material having a refractive index below a detectable range.

10. The system of claim 1 , wherein the interference spectra of the array of samples is collected simultaneously in a single frame.

11. A method for imaging samples in an array, comprising:

illuminating a sensing surface with an electromagnetic radiation source to generate respective resulting radiation, the sensing surface comprising a two dimensional array having a plurality of rows in a x-direction and a plurality of columns in an orthogonal y-direction, wherein each row comprises a plurality of detectable sample fields each having a detectable sample disposed therein and at least one reference field each having a reference sample disposed therein;

disposing a phase difference generator between the radiation source and the sensing surface;

introducing a pathlength difference in path lengths of the radiation emitable from the electromagnetic radiation incident on or resulting from the sensing surface;

interfering a radiation resulting from the plurality of sample fields and at least one reference field a radiation resulting from the plurality of detectable sample fields and the at least one reference field arranged in each respective row to form interference spectra;

acquiring the interference spectra; and

reconstructing spectral characteristics of the plurality of detectable sample fields,

wherein for the detectable samples disposed in each respective row, the acquiring step further comprises detecting the phase difference introduced in the x-direction of each respective row and spatially separating images of the detectable samples in the orthogonal y-direction.