Pulsed laser and bioanalytic system

1. A bioanalytic instrument comprising:

a chassis;

a printed circuit board that mounts to the chassis;

a socket on the printed circuit board adapted to receive a bio-optoelectronic chip such that a plurality of electrical connections are made to the bio-optoelectronic chip;

a pulsed optical source that, when operating, produces optical pulses at a repetition rate between 50 MHz and 200 MHz, wherein the pulsed optical source is assembled in a source module that mounts to the chassis; and

a clock-generation circuit configured to synchronize the pulsed optical source to a clock signal produced from detection of optical pulses from the pulsed optical source.

2. The bioanalytic instrument of claim 1 , wherein the pulsed optical source is a passively mode-locked laser.

3. The bioanalytic instrument of claim 2 , wherein a volume occupied by the source module is no greater than 0.5 cubic foot.

4. The bioanalytic instrument of claim 2 , further comprising at least one optically reflecting component disposed in the source module that provide a plurality of reflections that extend a length of a laser cavity of the passively mode-locked laser.

5. The bioanalytic instrument of claim 2 , further comprising a diode pump source module mounted to the source module.

6. The bioanalytic instrument of claim 5 , wherein the diode pump source module is mounted through a hole in a base plate on which the passively mode-locked laser is assembled, such that heat generated by the diode pump source module is dissipated on a first side of the base plate that is opposite to a second side of the base plate on which optical components of the passively mode-locked laser are mounted.

7. The bioanalytic instrument of claim 2 , further comprising:

an intracavity beam-steering module disposed within a laser cavity of the passively mode-locked laser;

a photodetector and signal processor configured to detect one or more characteristics associated with Q-switching of the passively mode-locked laser; and

control circuitry in communication with the signal processor and the intracavity beam-steering module, wherein the control circuitry is configured to provide signals to realign an intracavity laser beam in response to detecting the one or more characteristics associated with Q-switching.

8. The bioanalytic instrument of claim 2 , wherein a full-width half-maximum duration of the optical pulses is between about 5 ps and about 30 ps.

9. The bioanalytic instrument of claim 1 , further comprising signal processing circuitry configured to:

receive signals from the bio-optoelectronic chip that were generated in response to optical excitation of fluorophores at the bio-optoelectronic chip by a single characteristic wavelength; and

determine one type of signal that the received signals are indicative of from among a plurality of different signal types that are generated in response to optical excitation of fluorophores at the bio-optoelectronic chip by the single characteristic wavelength.

10. The bioanalytic instrument of claim 1 , wherein the clock-generation circuit is mounted to the source module.

11. The bioanalytic instrument of claim 1 , wherein an output from the clock-generation circuit provides the synchronized pulsed optical source to the bioanalytic instrument to time data-acquisition at the bio-optoelectronic chip.

12. The bioanalytic instrument of claim 11 , wherein signals are collected at the bio-optoelectronic chip at a time when excitation pulses from the pulsed optical source are in an essentially off state at the bio-optoelectronic chip.

13. The bioanalytic instrument of claim 1 , wherein the clock-generation circuit includes automatic gain control amplification to level amplitudes of electronic pulses generated from the optical pulses.

14. The bioanalytic instrument of claim 1 , wherein the clock-generation circuit includes saturated amplification to level amplitudes of electronic pulses generated from the optical pulses.

15. The bioanalytic instrument of claim 1 , wherein the clock-generation circuit includes a phase-locked loop that locks a phase of the pulsed optical source to the clock signal.

16. The bioanalytic instrument of claim 1 , wherein the clock-generation circuit includes a delay-locked loop that locks a phase of the pulsed optical source to the clock signal.

17. The bioanalytic instrument of claim 1 , further comprising a beam-steering module that mounts to the chassis, wherein the beam-steering module includes a first optical component arranged to adjust an incident angle of a beam from the pulsed optical source on the bio-optoelectronic chip essentially without adjusting a position of the beam on the bio-optoelectronic chip.

18. The bioanalytic instrument of claim 17 , further comprising circuitry configured to:

receive a signal from the bio-optoelectronic chip indicative of power coupled into a waveguide of the bio-optoelectronic chip; and

control the orientation of at least one optical component in the beam-steering module to change an amount of power coupled into the waveguide.

19. The bioanalytic instrument of claim 17 , wherein the printed circuit board attaches to the beam-steering module so as to reduce relative motion between the beam-steering module and the socket that receives the bio-optoelectronic chip.

20. The bioanalytic instrument of claim 17 , wherein the beam-steering module comprises three stepper motors with rotatable shafts adapted to rotate optical elements in the beam-steering module, wherein axes of the rotatable shafts all lie in essentially the same plane.