Method for managing blocks of commands intended for a microscopy imaging system, and corresponding computer program, storage medium and device
A technique and device for managing blocks of commands intended for a microscopy imaging device configured to acquire images of a sample. Each block of commands includes driving commands serving to drive a plurality of functional modules of the imaging device. Each command is defined by at least one acquisition parameter. The technique includes executing a first, predefined block of commands to acquire first images, and upon positive verification, by image analysis of a stop condition upon executing the first block, stopping the first block to execute a second predefined block of commands to acquire second images, the commands of the second block being defined by at least one second acquisition parameter, dynamically defined depending on the image analysis.
1 . A method implemented by a managing device and comprising:
managing blocks of commands for a microscopy imaging device configured to acquire images of a sample, each block of commands comprising a plurality of driving commands for driving a plurality of functional modules of said microscopy imaging device, each command being defined by at least one acquisition parameter, wherein the managing comprises:
executing at least one iteration of a first predefined block of commands to acquire at least a first image of said sample; and
upon a positive verification, by image analysis of said at least a first image, of a first stop condition related to at least one event of interest of said sample during a current iteration of said first block:
stopping said current iteration of said first block; and
executing at least one iteration of a second predefined block of commands to acquire at least a second image of said sample, at least one command of said second block being defined by at least a second acquisition parameter, the second acquisition parameter being dynamically defined as a function of at least one piece of information associated with said at least one event of interest resulting from said image analysis.
2 . The method according to claim 1 , comprising:
upon a positive verification, by image analysis of said at least a second image, of a second stop condition during a current iteration of said second block:
stopping said current iteration of said second block; and
executing at least one iteration of a third predefined block of commands to acquire at least a third image of said sample, at least one command of said third block being defined by at least a third acquisition parameter, the third acquisition parameter being predefined or dynamically defined as a function of at least one piece of information resulting from the analysis of said at least a second image.
3 . The method according to claim 2 , wherein the first and second stop conditions belong to the group consisting of:
detection of said at least one event of interest during said image analysis;
absence of an event of interest during said image analysis.
4 . The method according to claim 3 , comprising:
in response to a plurality of events of interest being detected, for each event of interest of the plurality:
executing said at least one iteration of the second block for said event of interest; and
dynamically defining said second acquisition parameter depending on at least one piece of information resulting from said image analysis associated with said event of interest.
5 . The method according to claim 3 , wherein said at least one piece of information belongs to the group consisting of:
one piece of information relating to a nature of said at least one event of interest;
one piece of information of position of said at least one event of interest.
6 . The method according to claim 2 , wherein the driving commands of said first, second and third blocks of commands belong to the group consisting of:
selection of a sample excitation light source;
selection of at least one parameter of a sample excitation light source;
selection of a sample excitation wavelength;
sample spatial displacement;
sample image capture;
detection wavelength selection;
adjustment of at least one parameter of an optical system.
7 . The method according to claim 1 , wherein the first and second acquisition parameters belong to the group consisting of:
a piece of data representative of a type of light source to be activated;
a piece of data representative of a light power value;
a piece of data representative of a number of images to be acquired;
a piece of data representative of an acquisition frequency value;
a piece of data representative of a value or range of values of excitation wavelengths;
a piece of data representative of at least one spatial coordinate relating to a sample position;
a piece of data representative of a value or range of values of detection wavelengths;
a piece of data representative of a magnification value of the optical system.
8 . A non-transitory, computer-readable storage medium storing a computer program product comprising program code instructions for implementing a method of managing blocks of commands, when said program is executed on a computer, wherein the method comprises:
managing the blocks of commands, which are configured for a microscopy imaging device configured to acquire images of a sample, each block of commands comprising a plurality of driving commands for driving a plurality of functional modules of said microscopy imaging device, each command being defined by at least one acquisition parameter, wherein the managing comprises:
executing at least one iteration of a first predefined block of commands to acquire at least a first image of said sample; and
upon a positive verification, by image analysis of said at least a first image, of a first stop condition related to at least one event of interest of said sample during a current iteration of said first block:
stopping said current iteration of said first block; and
executing at least one iteration of a second predefined block of commands to acquire at least a second image of said sample, at least one command of said second block being defined by at least a second acquisition parameter, the second acquisition parameter being dynamically defined as a function of at least one piece of information associated with said at least one event of interest resulting from said image analysis.
9 . A device comprising:
a processor; and
a non-transitory computer readable medium comprising instructions stored thereon for executing a method of managing blocks of commands when the instructions are executed by a processor, wherein the method comprises:
managing the blocks of commands, which are configured for a microscopy imaging device configured to acquire images of a sample, each block of commands comprising a plurality of driving commands for driving a plurality of functional modules of said device, each command being defined by at least one acquisition parameter, wherein the managing comprises:
executing at least one iteration of a first predefined block of commands in order to acquire at least a first image of said sample;
verifying, by image analysis of said at least a first image, a first stop condition related to at least one event of interest of said sample during a current iteration of said first block; and
in case of a positive verification of the first stop condition:
stopping said current iteration of said first block, and
executing at least one iteration of a second predefined block of commands for acquiring at least a second image of said sample, at least one command of said second block being defined by at least a second acquisition parameter, the second acquisition parameter being dynamically defined depending on at least one piece of information associated with said at least one event of interest resulting from said image analysis.