IP Library Granted Patent US 12,674,002
Granted Patent B2
US 12,674,002 · App. 17/783,506 · Granted Jul 7, 2026

MANAbodies targeting tumor antigens and methods of using

Inventors: Bert Vogelstein (Baltimore, MD); Kenneth W. Kinzler (Frankford, DE); Emily Han-Chung Hsiue (Baltimore, MD); Jacqueline Douglass (Baltimore, MD); Michael S. Hwang (Seattle, WA); Alexander H. Pearlman (Baltimore, MD); Nickolas Papadopoulos (Towson, MD); Shibin Zhou (Owings Mills, MD); Brian J. Mog (Baltimore, MD); Katharine M. Wright (Baltimore, MD); Sandra B. Gabelli (Ellicott City, MD)
Assignee: The Johns Hopkins University
C07K16/30A61P35/00C07K16/2809A61K39/395A61K2039/505C07K2317/24C07K2317/622
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,674,002
App. No.
17/783,506
Filed
Jun 8, 2022
Granted
Jul 7, 2026
Kind
B2
Examiner
SANG, HONG
Art Unit
1646
USPC
424/133.1
Abstract

This document provides methods and materials for assessing a mammal having or suspected of having cancer and/or for treating a mammal having cancer. For example, molecules including one or more antigen-binding domains (e.g., a single-chain variable fragment (scFv)) that can bind to a modified peptide (e.g., a tumor antigen), as well as method for using such molecules, are provided.

Claims (20)

1 . A molecule comprising an antigen-binding domain comprising a variable heavy chain and a variable light chain that can bind to a peptide-HLA complex, wherein said peptide is a modified p53 peptide comprising the amino acid sequence set forth in SEQ ID NO:1, wherein the antigen-binding domain comprises a CDR-VL1, a CDR-VL2, a CDR-VL3, a CDR-VH1, a CDR-VH2, and a CDR-VH3 as set forth in one of the groups below:

(i) the CDR-VL1 set forth in SEQ ID NO:5, the CDR-VL2 having the amino acid sequence SAY or SAS, the CDR-VL3 set forth in SEQ ID NO:6, the CDR-VH1 set forth in SEQ ID NO: 11, the CDR-VH2 set forth in SEQ ID NO:16, and the CDR-VH3 set forth in SEQ ID NO: 21;

(ii) the CDR-VL 1 set forth in SEQ ID NO:5, the CDR-VL2 having the amino acid sequence SAY or SAS, the CDR-VL3 set forth in SEQ ID NO:7, the CDR-VH1 set forth in SEQ ID NO: 12, the CDR-VH2 set forth in SEQ ID NO: 17, and the CDR-VH3 set forth in SEQ ID NO: 22;

(iii) the CDR-VL 1 set forth in SEQ ID NO:5, the CDR-VL2 having the amino acid sequence SAY or SAS, the CDR-VL3 set forth in SEQ ID NO:8, the CDR-VH1 set forth in SEQ ID NO: 13, the CDR-VH2 set forth in SEQ ID NO: 18, and the CDR-VH3 set forth in SEQ ID NO: 23;

(iv) the CDR-VL1 set forth in SEQ ID NO:5, the CDR-VL2 having the amino acid sequence SAY or SAS, the CDR-VL3 set forth in SEQ ID NO:9, the CDR-VH1 set forth in SEQ ID NO: 14, the CDR-VH2 set forth in SEQ ID NO: 19, and the CDR-VH3 set forth in SEQ ID NO: 24; and

(v) the CDR-VL 1 set forth in SEQ ID NO:5, the CDR-VL2 having the amino acid sequence SAY or SAS, the CDR-VL3 set forth in SEQ ID NO:10, the CDR-VH1 set forth in SEQ ID NO:15, the CDR-VH2 set forth in SEQ ID NO:20, and the CDR-VH3 set forth in SEQ ID NO: 25.

2 . The molecule of claim 1 , wherein said antigen binding domain comprises an amino acid sequence having at least 90% identity to the amino acid sequence set forth in SEQ ID NO:137, SEQ ID NO:138, SEQ ID NO:139, SEQ ID NO:140, or SEQ ID NO:141.

3 . The molecule of claim 1 , wherein said molecule is selected from the group consisting of an antibody, a single chain variable fragment (scFv), a chimeric antigen receptor (CAR), a tandem scFv, a bispecific T cell engager, a diabody, a single-chain diabody (scDb), an scFv-Fc, a bispecific antibody, and a dual-affinity re-targeting antibody.

4 . The molecule of claim 1 , wherein said molecule further comprises a second antigen-binding domain comprising a variable heavy chain and a variable light chain that binds to an effector cell receptor selected from the group consisting of CD3, CD28, CD4, CD8, CD16a, NKG2D, PD-1, CTLA-4, 4-1BB, OX40, ICOS, and CD27.

5 . The molecule of claim 4 , wherein said second antigen-binding domain binds to CD3, and wherein said second antigen-binding domain comprises the amino acid sequence selected from the group consisting of SEQ ID NO: 170, SEQ ID NO: 171, SEQ ID NO:172, SEQ ID NO:173, SEQ ID NO: 174, SEQ ID NO: 175, SEQ ID NO:176, SEQ ID NO: 177, SEQ ID NO: 178, SEQ ID NO: 179, SEQ ID NO: 180, SEQ ID NO:181, SEQ ID NO:182, and SEQ ID NO:183.

6 . The molecule of claim 4 , wherein the second antigen-binding domain binds CD3 and comprises the amino acid sequence selected from the group consisting of SEQ ID NO: 170, SEQ ID NO: 171, SEQ ID NO: 172, SEQ ID NO: 173, SEQ ID NO: 174, and SEQ ID NO: 175.

7 . The molecule of claim 4 , wherein said second antigen-binding domain binds CD16a and wherein said second antigen-binding domain comprises the amino acid sequence selected from the group consisting of SEQ ID NO: 185, SEQ ID NO: 186, SEQ ID NO: 187, SEQ ID NO:188, and SEQ ID NO: 189.

8 . The molecule of claim 1 , wherein said antigen binding domain comprises an amino acid sequence having at least 95% identity to the amino acid sequence set forth in SEQ ID NO: 137, SEQ ID NO:138, SEQ ID NO: 139, SEQ ID NO: 140, or SEQ ID NO: 141.

9 . The molecule of claim 1 , wherein said antigen binding domain comprises a VL having at least 95% identity to SEQ ID NO:729 and/or a VH having at least 95% identity to SEQ ID NO:730.

10 . The molecule of claim 1 , wherein said antigen binding domain comprises a VL comprising the amino acid sequence set forth in SEQ ID NO:729 and a VH comprising the amino acid sequence set forth in SEQ ID NO:730.

11 . The molecule of claim 1 , wherein the HLA of the peptide-HLA complex is HLA-A*02:01.

12 . The molecule of claim 1 , wherein the HLA of the peptide/HLA complex comprises an HLA allele alpha chain and a beta-2 microglobulin.

13 . A method for treating a human having a cancer, said method comprising:

administering to said human the molecule of claim 1 , wherein said cancer comprises cancer cells expressing a modified p53 peptide comprising the amino acid sequence of SEQ ID NO: 1 .

14 . The method of claim 13 , wherein said cancer is selected from the group consisting of Hodgkin's lymphoma, non-Hodgkin's lymphoma, acute myeloid leukemia, acute lymphoblastic leukemia, multiple myeloma, lung cancer, pancreatic cancer, gastric cancer, colorectal cancer, ovarian cancer, endometrial cancer, biliary tract cancer, liver cancer, breast cancer, prostate cancer, esophageal cancer, stomach cancer, kidney cancer, bone cancer, soft tissue cancer, head and neck cancer, glioblastoma multiforme, astrocytoma, thyroid cancer, germ cell tumor, and melanoma.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 15, 2022
From: VOGELSTEIN, BERT; KINZLER, KENNETH W.; HSIUE, EMILY HAN-CHUNG; DOUGLASS, JACQUELINE; HWANG, MICHAEL S.; PEARLMAN, ALEXANDER H.; PAPADOPOULOS, NICKOLAS; ZHOU, SHIBIN; MOG, BRIAN J.; WRIGHT, KATHARINE M.; GABELLI, SANDRA B.
To: THE JOHNS HOPKINS UNIVERSITY
Reel/Frame 062108/0445 →
Continuity (3)
Provisional Application 62949220 · Dec 17, 2019
Provisional Application 63059638 · Jul 31, 2020
Related Publication 20230051847A1 · Feb 16, 2023
References Cited (304)
US 6750325B1 · Jolliffe et al. · 2004 [cited by applicant]
US 7655751B2 · Itoh et al. · 2010 [cited by applicant]
US 9718893B2 · Jung et al. · 2017 [cited by applicant]
US 10118964B2 · Zhou et al. · 2018 [cited by applicant]
US 11111299B2 · Huang et al. · 2021 [cited by applicant]
US 11401332B2 · Lim et al. · 2022 [cited by applicant]
US 11807662B2 · Hsiue et al. · 2023 [cited by applicant]
US 20030022244A1 · Solomon et al. · 2003 [cited by applicant]
US 20050042218A1 · Zauderer · 2005 [cited by applicant]
US 20060177896A1 · Mach et al. · 2006 [cited by applicant]
US 20070065437A1 · Elson et al. · 2007 [cited by applicant]
US 20080044413A1 · Hammond et al. · 2008 [cited by applicant]
US 20130287748A1 · June et al. · 2013 [cited by applicant]
US 20180086832A1 · Vogelstein et al. · 2018 [cited by applicant]
US 20190248879A1 · Sabapathy et al. · 2019 [cited by applicant]
US 20200079854A1 · Hsiue · 2020 [cited by applicant]
US 20200368337A1 · Fritsch et al. · 2020 [cited by applicant]
US 20210147572A1 · Weidanz · 2021 [cited by applicant]
US 20240165155A1 · Smith et al. · 2024 [cited by applicant]
US 20240166751A1 · Vogelstein et al. · 2024 [cited by applicant]
US 20240294648A1 · Hsiue et al. · 2024 [cited by applicant]
US 20250034252A1 · Vogelstein et al. · 2025 [cited by applicant]
CN 101228187A · 2008 [cited by applicant]
CN 102675462 · 2012 [cited by applicant]
CN 103635486 · 2014 [cited by applicant]
CN 108250301A · 2018 [cited by applicant]
CN 110382550A · 2019 [cited by applicant]
JP 2004187676 · 2004 [cited by applicant]
JP 2008533986 · 2008 [cited by applicant]
JP 2020534839A · 2020 [cited by applicant]
WO WO2003070752 · 2003 [cited by applicant]
WO WO2005116072 · 2005 [cited by applicant]
WO WO2006100681 · 2006 [cited by applicant]
WO WO2012162067 · 2012 [cited by applicant]
WO WO2014134165 · 2014 [cited by applicant]
WO WO2015142675 · 2015 [cited by applicant]
WO WO2015150526 · 2015 [cited by applicant]
WO WO2016085904 · 2016 [cited by applicant]
WO WO2016154047 · 2016 [cited by applicant]
WO WO2016154246 · 2016 [cited by applicant]
WO WO2016166139 · 2016 [cited by applicant]
WO WO2016187508 · 2016 [cited by applicant]
WO WO2016199141 · 2016 [cited by applicant]
WO WO2016201124 · 2016 [cited by applicant]
WO WO2017021527 · 2017 [cited by applicant]
WO WO2017048593 · 2017 [cited by applicant]
WO WO2017134134 · 2017 [cited by applicant]
WO WO2017134158 · 2017 [cited by applicant]
WO WO2018071796 · 2018 [cited by applicant]
WO WO2018074978A1 · 2018 [cited by examiner]
WO WO2018213467 · 2018 [cited by applicant]
WO WO2019067242 · 2019 [cited by applicant]
WO WO2019112941 · 2019 [cited by applicant]
WO WO2019164451A1 · 2019 [cited by applicant]
WO WO2021127184 · 2021 [cited by applicant]
WO WO2021127814 · 2021 [cited by applicant]
Padlan, Advances in Protein Chemistry, 1996, 49:57-133). [cited by examiner]
Berglund, Berglund et al., Protein Science, 2008, 17:606-613. [cited by examiner]
Herold et al., Determinants of the assembly and function of antibody variable domains, Scientific Reports, 7:12276, doi:10.1038/s41598-017-12519-9, Sep. 2017. [cited by applicant]
Kranz et al., Restricted reassociation of heavy and light chains from hapten-specific monoclonal antibodies, Proc. Natl. Acad. Sci., USA, 78(9):5807-5811, 1981. [cited by applicant]
Ladner, R.C., Mapping the Epitopes of Antibodies, Biotechnol. Genet. Eng. Rev. 24:1-30, 2007. [cited by applicant]
ClinicalTrials.gov [online], “Neoadjuvant Nivolumab, or Nivolumab in Combination With Ipilimumab, in Resectable NSCLC (NA_00092076),” NCT0225962, last updated Nov. 3, 2023, retrieved on Jan. 11, 2024, retrieved from URL… [cited by applicant]
Danilova et al., “The Mutation-Associated Neoantigen Functional Expansion of Specific T Cells (MANAFEST) Assay: A Sensitive Platform for Monitoring Antitumor Immunity,” Cancer Immunology Research, Jun. 12, 2018, 6(8):88… [cited by applicant]
International Search Report and Written Opinion in International Appln. No. PCT/US2022/053065, mailed on Mar. 20, 2023, 9 pages. [cited by applicant]
PCT International Preliminary Report on Patentability in International Appln. No. PCT/US2022/022791, mailed on Oct. 12, 2023, 13 pages. [cited by applicant]
Smith et al, “Persistent mutant oncogene specific T cells in two patients benefitting from anti-PD-1,” Journal for ImmunoTherapy of Cancer, Feb. 11, 2019, 7(1):40, 10 pages. [cited by applicant]
Castle et al., “Mutation-Derived Neoantigens for Cancer Immunotherapy,” Frontiers in Immunology, Aug. 7, 2019, 10:1856, 7 pages. [cited by applicant]
Extended Search Report in European Appln. No. 20902329.0, mailed on Jan. 26, 2024, 7 pages. [cited by applicant]
International Preliminary Report on Patentability in International Appln. No. PCT/US2022/053065, mailed on Jun. 27, 2024, 6 pages. [cited by applicant]
[No Author Listed], “The problem with neoantigen prediction,” Nature Biotechnology, 2017, 35(2):97. [cited by applicant]
Abelin et al., “Mass spectrometry profiling of HLA-associated peptidomes in mono-allelic cells enables more accurate epitope prediction,” Immunity, 2017, 46(2):315-26. [cited by applicant]
Abrams et al., “Generation of stable CD4+ and CD8+ T cell lines from patients immunized with ras oncogene-derived peptides reflecting codon 12 mutations,” Cell Immunol, Dec. 1997, 182(2):137-151. [cited by applicant]
Abrams et al., “Mutant ras epitopes as targets for cancer vaccines,” Feb. 1996, Semin Oncol, 23(1):118-134 (Abstract only). [cited by applicant]
Adair et al., “Humanization of the murine anti-human CD3 monoclonal antibody OKT3,” Human Antibodies, 1994, 5(1-2):41-7. [cited by applicant]
Adderley et al., “KRAS-mutant non-small cell lung cancer: Converging small molecules and immune checkpoint inhibition,” EBioMedicine, 2019, 41:711-6. [cited by applicant]
Aldoss et al., “Correlates of resistance and relapse during blinatumomab therapy for relapsed/refractory acute lymphoblastic leukemia,” American journal of hematology, 2017, 92(9):858-65. [cited by applicant]
Anagnostou et al.,.. “Evolution of Neoantigen Landscape during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer”, Cancer Discovery, 2017, 7(3):264-276. [cited by applicant]
Anderson et al., “Intracellular transport of class I MHC molecules in antigen processing mutant cell lines,” Oct. 1993, J. Immunology, 151(7):3407-3419. [cited by applicant]
Andreatta et al., “Gapped sequence alignment using artificial neural networks: application to the MHC class I system,” Bioinformatics, 2016, 32(4):511-7. [cited by applicant]
Apps et al., “A critical look at HLA-G,” Trends in Immunol, Jul. 2008, 29(7):313-321. [cited by applicant]
Asano et al., “Rearranging the domain order of a diabody-based IgG-like bispecific antibody enhances its antitumor activity and improves its degradation resistance and pharmacokinetics,” InMAbs, 2014, 6(5):1243-1254. [cited by applicant]
Asano et al., “Structural considerations for functional anti-EGFR [cited by applicant]
Ataie et al., “Structure of a TCR-mimic antibody with target predicts pharmacogenetics,” Journal of molecular biology. 2016 , 428(1):194-205. [cited by applicant]
Ayriss et al., “High-throughput screening of single-chain antibodies using multiplexed flow cytometry,” Jan. 2007, Journal of Proteome Research, 6(3):1072-1082, 11 pages. [cited by applicant]
Azriel-Rosenfeld et al., “A Human Synthetic Combinatorial Library of Arrayable Single-chain antibodies based on Shuffling in Vivo Formed CDRs into General Framework Regions,” J. Mol. Biol, 2004, 335:177-192. [cited by applicant]
Baker et al., “Chromosome 17 deletions and p53 gene mutations in colorectal carcinomas,” Science, Apr. 1989, 244(4901):217-21. [cited by applicant]
Bargou et al., “Tumor regression in cancer patients by very low doses of a T cell-engaging antibody,” Science, 2008, 321(5891):974-7. [cited by applicant]
Barretina et al., “The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity,” Nature, 2012, 483(7391):603-7. [cited by applicant]
Bedard et al., “Small molecules, big impact: 20 years of targeted therapy in oncology,” The Lancet, 2020, 395(10229):1078-88. [cited by applicant]
Bernal et al., “Implication of the β2-microglobulin gene in the generation of tumor escape phenotypes,” Sep. 2012, Cancer Immunol Immunother, 61(9):1359-71. [cited by applicant]
Beverley et al., “Distinctive functional characteristics of human ,,T lymphocytes defined by E rosetting or a monoclonal anti-T cell antibody,” European Journal of Immunology, 1981, 11(4):329-34. [cited by applicant]
Bluemel et al., “Epitope distance to the target cell membrane and antigen size determine the potency of T cell-mediated lysis by BiTE antibodies specific for a large melanoma surface antigen,” Cancer immunology, immunot… [cited by applicant]
Bondgaard et al., “High specificity but low sensitivity of mutation-specific antibodies against EGFR mutations in non-small-cell cancer,” Dec. 2014, Mod Pathol, 27(12):1590-1598, 9 pages. [cited by applicant]
Borg et al., “A novel interaction between Rab7b and actomyosin reveals a dual role in intracellular transport and cell migration,” Journal of Cell Science, 2014, 127(22):4927-39. [cited by applicant]
Bossi et al., “Examining the presentation of tumor-associated antigens on peptide-pulsed T2 cells,” Oncoimmunology, 2013, 2(11):e26840. [cited by applicant]
Bostrom et al., “Chapter 2: Design and construction of synthetic phage-displayed fab libraries,” May 2009, Methods in Molecular Biology, 562:17-35, 19 pages. [cited by applicant]
Bouvier et al., “Crystal structures of HLA-A*0201 complexed with antigenic peptides with either the amino- or carboxyl-terminal group substituted by a methyl group,” May 1998, Proteins, 33(3):97-106, 10 pages. [cited by applicant]
Bradbury et al., “Beyond natural antibodies: the power of in vitro display technologies,” Nat Biotechnol, Mar. 2011, 29(3):245-254, 28 pages. [cited by applicant]
Brickner et al., “The PANE1 gene encodes a novel human minor histocompatibility antigen that is selectively expressed in B-lymphoid cells and B-CLL,” May 1, 2006, Blood, 107(9):3779-3786, 24 pages. [cited by applicant]
Brinkmann et al., “The making of bispecific antibodies,” InMAbs, 2017, 9(2):182-212. [cited by applicant]
Brischwein et al., “MT110: A novel bispecific single-chain antibody construct with high efficacy in eradicating established tumors,” Mol Immunol., 2006, 43:1129-43. [cited by applicant]
Buhrman et al., “Analysis of binding site hot spots on the surface of Ras GTPase,” Journal of Molecular Biology, 2011, 413(4):773-89. [cited by applicant]
Cameron et al., “Identification of a Titin-derived HLA-A1-presented peptide as a cross-reactive target for engineered MAGE A3-directed T cells,” Science Translational Medicine, 2013, 5(197):197ra103. [cited by applicant]
Canon et al., “The clinical KRAS (G12C) inhibitor AMG 510 drives anti-tumour immunity,” Nature, 2019, 575(7781):217-23. [cited by applicant]
Carosella et al., “Beyond the increasing complexity of the immunomodulatory HLA-G molecule,” Blood, May 2008, 111(10):4862-4870. [cited by applicant]
Carter et al., “Humanization of an anti-p185HER2 antibody for human cancer therapy,” May 1992, Proc. Natl. Acad. Sci., 89(10):4285-4289, 5 pages. [cited by applicant]
Castle et al., “Exploiting the mutanome for tumor vaccination,” Mar. 1, 2012, Cancer Res, 72(5):1081-1091, 12 pages. [cited by applicant]
Caushi et al., “Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers,” Nature, Jul. 21, 2021, 596(7870):126-132. [cited by applicant]
Chang et al., “A therapeutic T cell receptor mimic antibody targets tumor-associated PRAME peptide/HLA-I antigens,” The Journal of Clinical Investigation, 2017, 127(7):2705-18. [cited by applicant]
Chapuis et al., “T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant,” Nature Medicine, 2019, 25(7):1064-72. [cited by applicant]
Chen et al., “A comprehensive survey of genomic alterations in gastric cancer reveals recurrent neoantigens as potential therapeutic targets,” BioMed Research International, 2019. [cited by applicant]
Choudhuri et al., “T-cell receptor triggering is critically dependent on the dimensions of its peptide-MHC ligand,” Nature, 2005, 436(7050):578-82. [cited by applicant]
Coles et al., “TCRs with distinct specificity profiles use different binding modes to engage an identical peptide-HLA complex,” The Journal of Immunology, 2020, 204(7):1943-53. [cited by applicant]
Coordinators, “Database resources of the national center for biotechnology information,” Nucleic acids research, 2018, 46(Database issue):D8. [cited by applicant]
Cottrell et al., “Pathologic features of response to neoadjuvant anti-PD-1 in resected non-small-cell lung carcinoma: a proposal for quantitative immune-related pathologic response criteria (irPRC),” Ann. Oncol., Aug. 1… [cited by applicant]
Curran et al., “Chimeric antigen receptors for T cell immunotherapy: current understanding and future directions,” Gene Med, 2012, 14(6):405-415. [cited by applicant]
D'Angelo et al., “Incidence of EGFR Exon 19 Deletions and L858R in Tumor Specimens From Men and Cigarette Smokers with Lung Adenocarcinomas,” May 20, 2011, J. Clin. Oncol., 29(15):2066-2070, 5 pages. [cited by applicant]
Dao et al., “Approaching untargetable tumor-associated antigens with antibodies,” Jul. 2013, OncoImmunology, 2(7):e24678, 2 pages. [cited by applicant]
Dao et al., “Targeting the intracellular WT1 oncogene product with a therapeutic human antibody,” Mar. 2013, Science Translational Medicine, 5(176):176ra33, 22 pages. [cited by applicant]
Dao et al., “Therapeutic bispecific T-cell engager antibody targeting the intracellular oncoprotein WT1,” Nat. Biotechnol, Oct. 2015, 33:1079-1086. [cited by applicant]
De Castro et al., “ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins,” Nucleic Acids Research, 2006, 34(suppl_2):W362-5. [cited by applicant]
De Verteuil et al., “Origin and plasticity of MHC I-associated self peptides,” Jul. 2012, Autoimmunity Reviews, 11(9):627-635. [cited by applicant]
Denkberg et al., “Modification of a tumor-derived peptide at an HLA-A2 anchor residue can alter the conformation of the MHC-peptide complex: probing with TCR-like recombinant antibodies,” J. Immunol, 2002, 169:4399-4407. [cited by applicant]
Digiusto et al., “Preparing clinical grade Ag-specific T cells for adoptive immunotherapy trials,” Cytotherapy, 2007, 9(&):613-29. [cited by applicant]
Dufner et al., “Harnessing phage and ribosome display for antibody optimisation,” Trends in Biotechnology, Nov. 2006, 24(11):523-529. [cited by applicant]
Efremova et al., “Neoantigens Generated by Individual Mutations and Their Role in Cancer Immunity and Immunotherapy,” Frontiers in Immunology, 2017, 8(Article 1679):1-8. [cited by applicant]
Eigenbrot et al., “X-ray structures of the antigen-binding domains from three variants of humanized anti-p185HER2 antibody 4D5 and comparison with molecular modeling,” Feb. 1993, J. Mol. Biol., 229(4):969-995. [cited by applicant]
Ellis et al., “Frequencies of HLA-A2 alleles in five U.S. population groups: Predominance of A*02011 and identification of HLA-A*0231,” Mar. 2000, Human Immunology, 61(3):334-340. [cited by applicant]
Eshhar et al., “Specific activation and targeting of cytotoxic lymphocytes through chimeric single chains consisting of antibody-binding domains and the gamma or zeta subunits of the immunoglobulin and T-cell receptors,… [cited by applicant]
Extended European Search Report in European Application No. 18802867.4, mailed Mar. 15, 2021, 16 pages. [cited by applicant]
Extended European Search Report in European Application No. 16769561.8, dated Jul. 6, 2018, 9 pages. [cited by applicant]
Extended European Search Report in European Application No. 18802867.4, dated Dec. 11, 2020, 21 pages. [cited by applicant]
Faroudi et al., “Cutting edge: T lymphocyte activation by repeated immunological synapse formation and intermittent signaling,” The Journal of Immunology, 2003, 171(3):1128-32. [cited by applicant]
Fearon et al., “A Genetic Model for Colorectal Tumorigenesis,” Cell Press, Jun. 1, 1990, 61(5):759-767, 9 pages. [cited by applicant]
Fellhouse et al., “High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries,” Aug. 2007, J. Mol. Biol., 373(4):924-940, 17 pages. [cited by applicant]
Forde et al., “Neoadjuvant PD-1 Blockade in Resectable Lung Cancer,” N. Engl. J. Med., May 24, 2018, 378(21):1976-1986. [cited by applicant]
Gejman et al., “Identification of the Targets of T-cell Receptor Therapeutic Agents and Cells by Use of a High-Throughput Genetic Platform Identifying T-cell Targets Using a High-Throughput Method,” Cancer Immunology Re… [cited by applicant]
GenBank Accession No. AAH03596.1, “Tumor protein p53 [ [cited by applicant]
Gerstung et al., “The evolutionary history of 2,658 cancers,” Nature, 2020, 578(7793):122-8. [cited by applicant]
Gomez-Eerland et al., “Manufacture of gene-modified human T-cells with a memory stem/central memory phenotype,” Human gene therapy methods, 2014, 25(5):277-87. [cited by applicant]
Gonzalez-Galarza, et al., “Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations,” Nucleic Acids Research, 2015, 43(D1):D784-8. [cited by applicant]
Grossman et al., “Toward a shared vision for cancer genomic data,” New England Journal of Medicine, 2016, 375(12):1109-12. [cited by applicant]
Gubin et al., “Checkpoint Blockade Cancer Immunotherapy Targets Tumour-Specific Mutant Antigens,” Nov. 27, 2014, Nature, 515(7528):577-581, 32 pages. [cited by applicant]
Halilovic et al., “Therapeutic strategies for inhibiting oncogenic BRAF signaling,” Curr Opin Pharmacol, Aug. 2008, 8(4):419-426. [cited by applicant]
Ham et al., “TP53gain-of-function mutation promotes inflammation in glioblastoma,” Cell Death & Differentiation, May 2018, 26(3):409-425. [cited by applicant]
Hammond et al., “Selective targeting and potent control of tumor growth using an EphA2/CD3-Bispecific single-chain antibody construct,” Cancer research, 2007, 67(8):3927-35. [cited by applicant]
Harndahl et al., “Peptide binding to HLA class I molecules: homogenous, high-throughput screening, and affinity assays,” J. Biomol. Screen, Feb. 2009, 14(2):173-180. [cited by applicant]
Harper et al., “An approved in vitro approach to preclinical safety and efficacy evaluation of engineered T cell receptor anti-CD3 bispecific (ImmTAC) molecules,” PLoS One, 2018, 13(10):e0205491. [cited by applicant]
Hexham et al., “Influence of relative binding affinity on efficacy in a panel of anti-CD3 scFv immunotoxins,” Molecular immunology, 2001, 38(5):397-408. [cited by applicant]
hla.alleles.org [online], “HLA Nomenclature,” retrieved on Mar. 17, 2015, retrieved from URL<http://hla.alleles.org/nomenclature/stat.html>, 2 pages. [cited by applicant]
Hobbs et al., “RAS isoforms and mutations in cancer at a glance,” Journal of Cell Science, 2016, 129(7):1287-92. [cited by applicant]
Holliger et al., “. . . “Diabodies”: small bivalent and bispecific antibody fragments,” Proceedings of the National Academy of Sciences, 1993, 90(14):6444-8. [cited by applicant]
Hoof et al., “Proteome sampling by the HLA class I antigen processing pathway,” May 2012, Plos Computational Biology, 8(5):e1002517, 9 pages. [cited by applicant]
Houghton, et al., “Immune recognition of self in immunity against cancer,” J. Clin. Invest., 2004, 114(4):468-471. [cited by applicant]
Hsiue et al., “Targeting a neoantigen derived from a common TP53 mutation,” Science, Mar. 1, 2021, 371(6533): eabc8697. [cited by applicant]
Huang et al., “CD-HIT Suite: a web server for clustering and comparing biological sequences,” Bioinformatics, 2010, 26(5):680-2. [cited by applicant]
Huehls et al., “Bispecific T-cell engagers for cancer immunotherapy,” Immunology and cell biology, 2015, 93(3):290-6. [cited by applicant]
International Preliminary Report on Patentability in International Application No. PCT/US2016/023673, dated Sep. 26, 2017, 8 pages (with English translation). [cited by applicant]
International Preliminary Report on Patentability in International Application No. PCT/US2020/06561, dated May 17, 2022, 6 pages. [cited by applicant]
International Search Report and Written Opinion in International Application No. PCT/US2016/023673, dated Jul. 25, 2016, 13 pages. [cited by applicant]
International Search Report and Written Opinion in International Application No. PCT/US2020/065617, mailed on Apr. 1, 2021, 8 pages. [cited by applicant]
Janes et al., “Targeting KRAS mutant cancers with a covalent G12C-specific inhibitor,” Cell, 2018, 172(3):578-89. [cited by applicant]
Jena et al., “Redirecting T-cell specificity by introducing a tumor-specific chimeric antigen receptor,” Aug. 2010, Blood, 116(7):1035-1044, 17 pages. [cited by applicant]
Johnson et al., “Effector cell recruitment with novel Fv-based dual-affinity re-targeting protein leads to potent tumor cytolysis and in vivo B-cell depletion. Journal of molecular biology,” 2010, 399(3):436-49. [cited by applicant]
Jones et al., “Core signaling pathways in human pancreatic cancers revealed by global genomic analyses,” Science, 2008, 321(5897):1801-6. [cited by applicant]
Junttila et al., “Antitumor Efficacy of a Bispecific Antibody That Targets HER2 and Activates T Cells,” Cancer research, 2014, 74(19):5561-71. [cited by applicant]
Kato et al., “A monoclonal antibody IMab-1 specifically recognizes IDH1R132H, the most common glioma-derived mutation,” Biochemical and Biophysical Research Communications, 2009, 390(3):547-51. [cited by applicant]
Kato et al., “Effective screening of T cells recognizing neoantigens and construction of T-cell receptor-engineered T cells,” Oncotarget, 2018, 9(13):11009. [cited by applicant]
Kato et al., “Understanding the function-structure and function-mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis,” Proceedings of the National Academy of Sciences, 200… [cited by applicant]
Kershaw et al., “Clinical application of genetically modified T cells in cancer therapy,” Apr. 2014, Clinical & Translational Immunology, 3(5):e16, 7 pages. [cited by applicant]
Kershaw et al.,.. “Supernatural T cells: genetic modification of T cells for cancer therapy,” Nature Reviews Immunol., 2005, 5(12):928-940. [cited by applicant]
Kim et al., “TCR mechanobiology: torques and tunable structures linked to early T cell signaling,” Frontiers in immunology, 2012, 3(76):1-8. [cited by applicant]
Kim et al., “The αβ T cell receptor is an anisotropic mechanosensor,” Journal of Biological Chemistry, 2009, 284(45):31028-37. [cited by applicant]
Kinde et al., “Detection and quantification of rare mutations with massively parallel sequencing,” Proceedings of the National Academy of Sciences, 2011, 108(23):9530-5. [cited by applicant]
Kipriyanov et al., “Effect of domain order on the activity of bacterially produced bispecific single-chain Fv antibodies,” Journal of molecular biology, 2003, 330(1):99-111. [cited by applicant]
Koide et al., “The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins,” May 2009, ACS Chem. Biol., 4(5):325-334, 16 pages. [cited by applicant]
Kraemer et al., “ HLA-E: Presentation of a broader peptide repertoire impacts the cellular immune response-implications on HSCT outcome,” Stem Cells Inter, 2015, article ID 346714, pp. 1-12. [cited by applicant]
Krissinel et al., “Inference of macromolecular assemblies from crystalline state,” Journal of Molecular Biology, 2007, 372(3):774-97. [cited by applicant]
Kula et al., “T-Scan: a genome-wide method for the systematic discovery of T cell epitopes,” Cell, 2019, 178(4):1016-28. [cited by applicant]
Kunik et al., “Structural consensus among antibodies defines the antigen binding site,” Feb. 2012, PLoS Computational Biology, 8(2):e1002388, 12 pages. [cited by applicant]
Kuroda et al., “Structural classification of CDR-H3 revisited: a lesson in antibody modeling,” Nov. 2008, Proteins, 73(3):608-620. [cited by applicant]
Labrijn et al., “Bispecific antibodies: a mechanistic review of the pipeline,” Nature reviews Drug discovery, 2019, 18(8):585-608. [cited by applicant]
Le et al., “Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade,” Science, Jul. 2017, 357(6349):409-413. [cited by applicant]
Li et al., “A model for RAS mutation patterns in cancers: finding the sweet spot,” Nature Reviews Cancer, 2018, 18(12):767-77. [cited by applicant]
Li et al., “Construction and characterization of a humanized anti-human CD3 monoclonal antibody 12F6 with effective immunoregulation functions,” Immunology, 2005, 116(4):487-98. [cited by applicant]
Liddy et al., “Monoclonal TCR-redirected tumor cell killing,” Nature Medicine, 2012, 18(6):980-7. [cited by applicant]
Lin et al., “Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery,” eLife, 2014, 3:e04766. [cited by applicant]
Link et al., “Anti-CD3-based bispecific antibody designed for therapy of human B-cell malignancy can induce T-cell activation by antigen-dependent and antigen-independent mechanisms,” Jul. 1998, Int. J. Cancer, 77(2):25… [cited by applicant]
Low et al., “Immunologic recognition of a shared p53 mutated neoantigen in a patient with metastatic colorectal cancer,” Cancer Immunology Research, 2019, 7(4):534-43. [cited by applicant]
Low et al., “Targeting mutant p53-expressing tumours with a T cell receptor-like antibody specific for a wild-type antigen,” Nature Communications, 2019, 10(1):1-4. [cited by applicant]
Lowe et al., “TCR-like antibody drug conjugates mediate killing of tumor cells with low peptide/HLA targets,” MAbs 2017, 9(4):603-614. [cited by applicant]
Lu et al., “The effect of variable domain orientation and arrangement on the antigen-binding activity of a recombinant human bispecific diabody,” Biochemical and biophysical research communications, 2004, 318(2):507-13. [cited by applicant]
Luft et al., “Exogenous peptides presented by transporter associated with antigen processing (TAP)-Deficient and TAP-Competent cells: Intracellular loading and kinetics of presentation,” Sep. 1, 2017, J. Immunol., 167(5… [cited by applicant]
Lundegaard et al., “Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers,” Apr. 2008, Bioinformatics, 24(11):1397-1398, 2 pag… [cited by applicant]
Lundegaard et al., “NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11,” May 7, 2008, Nucleic Acids Research, 36:W509-512, 4 pages. [cited by applicant]
Maiers et al., “High-resolution HLA alleles and haplotypes in the United States population,” Human Immunology, 2007, 68(9):779-88. [cited by applicant]
Malekzadeh et al., “Neoantigen screening identifies broad TP53 mutant immunogenicity in patients with epithelial cancers,” The Journal of Clinical Investigation, 2019, 129(3): 1109-1114. [cited by applicant]
Martayan et al., “Class I HLA folding and antigen presentation in beta 2-microglobulin-defective Daudi cells,” Mar. 2009, The Journal of Immunology, 2009, 182:3609-3617. [cited by applicant]
Marubashi et al., “Rab7B/42 is functionally involved in protein degradation on melanosomes in keratinocytes,” Cell structure and function, 2020, 19039. [cited by applicant]
Maruyama et al., “Increasing the efficiency of precise genome editing with CRISPR-Cas9 by inhibition of nonhomologous end joining,” Nature biotechnology, 2015, 33(5):538-42. [cited by applicant]
Maude et al., “Chimeric antigen receptor T cells for sustained remissions in leukemia,” New England Journal of Medicine, 2014, 371(16):1507-17. [cited by applicant]
McConnell et al., “An integrated approach to extreme thermostablilization and affinity maturation of an antibody,” Feb. 2013, PEDS, 26(2):151-163, 13 pages. [cited by applicant]
Merchant et al., “An efficient route to human bispecific IgG,” Nature biotechnology, 1998, 16(7):677-81. [cited by applicant]
Miller et al., “A human monoclonal antibody neutralizes diverse HIV-1 isolates by binding a critical gp41 epitope,” Oct. 11, 2005, Proc. Natl. Acad. Sci., 102(41):14759-14764, 6 pages. [cited by applicant]
Miller et al., “An engineered antibody fragment targeting mutant β-catenin via major histocompatibility complex I neoantigen presentation,” Journal of Biological Chemistry, 2019, 294(50):19322-34. [cited by applicant]
Miller et al., “High somatic mutation and neoantigen burden are correlated with decreased progression-free survival in multiple myeloma,” Blood Cancer Journal, 2017, 7:e612, 1-11. [cited by applicant]
Miller et al., “T Cell Receptor-Like Recognition of Tumor In Vivo by Synthetic Antibody Fragment,” Aug. 2012, PLoS One, 7(8):e43746, 14 pages. [cited by applicant]
Moore et al., “Application of dual affinity retargeting molecules to achieve optimal redirected T-cell killing of B-cell lymphoma,” Blood, The Journal of the American Society of Hematology, 2011, 117(17):4542-51. [cited by applicant]
Morgan et al., “Cancer regression and neurological toxicity following anti-MAGE-A3 TCR gene therapy,” Journal of Immunotherapy, 2013, 36(2):133-51. [cited by applicant]
Muzumdar et al., “Survival of pancreatic cancer cells lacking KRAS function,” Nature communications, 2017, 8(1):1-9. [cited by applicant]
Myszka, “Improving biosensor analysis” 1999, J. Mol. Recognit, 12:279-284. [cited by applicant]
NCBI.gov [Online], “HLA-F major histocompatibility complex, class I F [ [cited by applicant]
Nielsen et al., “Reliable prediction of T-cell epitopes using neural networks with novel sequence representations,” Feb. 2003, Protein Science, 12(5):1007-1017, 11 pages. [cited by applicant]
Nolan et al., “Flow cytometry: a versatile tool for all phases of drug discovery,” Apr. 1999, Drug Discov Today, 4(4):173-180, 8 pages. [cited by applicant]
Novak et al., “Selective antibody-mediated targeting of class I MHC to EGFR-expressing tumor cells induces potent antitumor CTL activity in vitro and in vivo,” Oct. 2006, International Journal of Cancer, 120:329-336, 8 … [cited by applicant]
Ostrem et al., “K-Ras (G12C) inhibitors allosterically control GTP affinity and effector interactions,” Nature, 2013, 503(7477):548-51. [cited by applicant]
Paix et al., “Precision genome editing using synthesis-dependent repair of Cas9-induced DNA breaks,” Proceedings of the National Academy of Sciences, 2017, 114(50):E10745-54. [cited by applicant]
Park et al., “Long-term follow-up of CD19 CAR therapy in acute lymphoblastic leukemia,” New England Journal of Medicine, 2018, 378(5):449-59. [cited by applicant]
Parkhurst et al., “Unique Neoantigens Arise from Somatic Mutations in Patients with Gastrointestinal Cancers Neoantigens in Patients with Gastrointestinal Cancers,” Cancer discovery, 2019, 9(8):1022-35. [cited by applicant]
PCT International Preliminary Report on Patentability in International Appln. No. PCT/US2018/032996, dated Nov. 19, 2019, 5 pages. [cited by applicant]
PCT International Search Report and Written Opinion in International Application No. PCT/US2018/032996, mailed on Aug. 27, 2018, 20 pages. [cited by applicant]
PCT International search Report and Written Opinion in International Appln. No. PCT/US2022/022791, mailed on Nov. 17, 2022, 21 pages. [cited by applicant]
Petryszak et al., “Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants,” Nucleic acids research, 2016, 44(D1):D746-52. [cited by applicant]
Porgador et al., “Localization, quantitation, and in situ detection of specific peptide-MHC class I complexes using a monoclonal antibody,” Jun. 1997, Immunity, 6(6):715-726, 12 pages. [cited by applicant]
Prior et al., “A comprehensive survey of Ras mutations in cancer,” Cancer Research, 2012, 72(10):2457-67. [cited by applicant]
Prior et al., “The Frequency of Ras Mutations in Cancer,” Cancer Research, 2020, 80(14):2969-74. [cited by applicant]
Purbhoo et al., “T cell killing does not require the formation of a stable mature immunological synapse,” Nature Immunology, 2004, 5(5):524-30. [cited by applicant]
Puri et al., “Highly efficient selection of epitope specific antibody through competitive yeast display library sorting,” Aug. 2013, mAbs, 5(4):533-539, 7 pages. [cited by applicant]
Rafiq et al., “Engineering strategies to overcome the current roadblocks in CAR T cell therapy,” Nature Reviews Clinical Oncology, 2020, 17(3):147-67. [cited by applicant]
Rafiq et al., “Optimized T-cell receptor-mimic chimeric antigen receptor T cells directed toward the intracellular Wilms Tumor 1 antigen,” Leukemia, 2017, 31(8):1788-97. [cited by applicant]
Rahma et al., “The immunological and clinical effects of mutated ras peptide vaccine in combination with IL-2, GM-CSF, or both in patients with solid tumors,” Feb. 2014, Journal of Translational Medicine, 12:55, 12 page… [cited by applicant]
Raman et al., “Direct molecular mimicry enables off-target cardiovascular toxicity by an enhanced affinity TCR designed for cancer immunotherapy,” Scientific Reports, 2016, 6(1):1-0. [cited by applicant]
Richardson et al., “Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA,” Nature biotechnology, 2016, 34(3):339-44. [cited by applicant]
Rizvi et al., “Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer,” Science, Apr. 3, 2015, 348(6230):124-128. [cited by applicant]
Robbins et al., “Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells,” Jun. 2013, Nat Med, 19(6):747-752, 14 pages. [cited by applicant]
Roblek et al., “Monoclonal antibodies specific for disease-associated point-mutants: Lamin A/C R453W and R482W,” May 2010, PloS One, 5(5):e10604, 14 pages. [cited by applicant]
Rodrigues et al., “Engineering a humanized bispecific F(ab) 2 fragment for improved binding to T cells, ” International Journal of Cancer, 1992, 7:45-50. [cited by applicant]
Rosenberg et al., “Adoptive cell transfer as personalized immunotherapy for human cancer,” Science, 2015, 348(6230):62-8. [cited by applicant]
Rosenberg et al., “Use of tumor-infiltrating lymphocytes and interleukin-2 in the immunotherapy of patients with metastatic melanoma,” New England Journal of Medicine, 1988, 319(25):1676-80. [cited by applicant]
Sadelain et al., “The promise and potential pitfalls of chimeric antigen receptors,” Curr. Opin. Immunol., 2009, 21(2):215-223. [cited by applicant]
Salter et al., “Genes regulating HLA class I antigen expression in T-B lymphoblast hybrids,” Mar. 1985, Immunogenetics, 21(3):235-246. [cited by applicant]
Schmidt et al., “In silico and cell-based analyses reveal strong divergence between prediction and observation of T-cell-recognized tumor antigen T-cell epitopes,” Journal of Biological Chemistry, 2017, 292(28):11840-9. [cited by applicant]
Scholtalbers et al., “TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression,” Genome medicine, 2015, 7(1):1-7. [cited by applicant]
Schreiber et al., “Cancer Immunoediting: Integrating Immunity's Roles in Cancer Suppression and Promotion,” Mar. 2011, Science, 331(6024):1565-1570, 6 pages. [cited by applicant]
Schumacher et al., “Neoantigens in cancer immunotherapy,” Science, 2015, 348(6230):69-74. [cited by applicant]
Schuster et al., “Tisagenlecleucel in adult relapsed or refractory diffuse large B-cell lymphoma,” New England Journal of Medicine, 2019, 380(1):45-56. [cited by applicant]
Scott et al., “Monoclonal antibodies in cancer therapy,” Cancer immunity, 2012, 12:14. [cited by applicant]
Segal et al., “Epitope landscape in breast and colorectal cancer,” Cancer Research, 2008, 68(3):889-92. [cited by applicant]
Sela-Culang et al., “The structural basis of antibody-antigen recognition,” Oct. 2013, Frontiers in Immunology, 4:302, 13 pages. [cited by applicant]
Sergeeva et al., “An anti-PR1/HLA-A2 T-cell receptor-like antibody mediates complement-dependent cytotoxicity against acute myeloid leukemia progenitor cells,” Blood, 2011, 117(160):4262-4272. [cited by applicant]
Shalaby et al., “Development of humanized bispecific antibodies reactive with cytotoxic lymphocytes and tumor cells overexpressing the HER2 protooncogene,” The Journal of Experimental Medicine, 1992, 175(1):217-25. [cited by applicant]
Sharma et al., “Epidermal growth factor receptor mutations in lung cancer,” Mar. 2007, Nat. Rev. Cancer, 7(3):169-181, 13 pages. [cited by applicant]
Sharma et al., “Recent advances in T-cell engineering for use in immunotherapy,” F1000Research, 2016, 5:F1000 Faculty Rev):2344. [cited by applicant]
Shtraizent et al., “Hot Spot Mutation in TP53 (R248Q) Causes Oncogenic Gain-of-Function Phenotypes in a Breast Cancer Cell Line Derived from an African American Patient,” Int. J. Environ. Res. Public Health, 2016, 13(1)… [cited by applicant]
Sidhu et al., Phage-displayed Antibody Libraries of Synthetic Heavy Chain Complementarity Determining Regions, Feb. 2004, J. Mol. Biol., 338(2):299-310, 12 pages. [cited by applicant]
Skora et al., Generation of MANAbodies specific to HLA-restricted epitopes encoded by somatically mutated genes. Proceedings of the National Academy of Science of the USA.2015, Epub Jul. 27, 2015, 112(32):9967-9972. [cited by applicant]
Sliwkowski et al., “Antibody therapeutics in cancer,” Science, Sep. 13, 2013, 341(6151):1192-1198. [cited by applicant]
Snyder et al., “Genetic basis for clinical response to CTLA-4 blockade in melanoma,” N. Engl. J. Med., Dec. 4, 2014, 371(23):2189-2199. [cited by applicant]
Sondek et al., “A general strategy for random insertion and substitution mutagenesis: substoichiometric coupling of trinucleotide phosphoramidites,” Proceedings of the National Academy of Sciences, 1992, 89(8):3581-5. [cited by applicant]
Steinwand et al., “The influence of antibody fragment format on phage display based affinity maturation of IgG,” Nov. 26, 2013, mAbs, 6(1):204-218, 16 pages. [cited by applicant]
Stewart-Jones et al., “Rational development of high-affinity T-cell receptor-like antibodies,” Proceedings of the National Academy of Sciences, 2009, 106(14):5784-8. [cited by applicant]
Stone et al., “A sensitivity scale for targeting T cells with chimeric antigen receptors (CARs) and bispecific T-cell Engagers (BiTEs),” Oncoimmunology, 2012, 1(16):863-73. [cited by applicant]
Sugiyama et al., “A semi high-throughput method for screening small bispecific antibodies with high cytotoxicity,” Scientific reports, 2017, 7(1):1-2. [cited by applicant]
Sun et al., “Evolution of CD8+ T Cell Receptor (TCR) Engineered Therapies for the Treatment of Cancer,” Cells, Sep. 2021, 10(9):2379. [cited by applicant]
Sung et al., “Dual-Affinity Re-Targeting proteins direct T cell-mediated cytolysis of latently HIV-infected cells,” The Journal of clinical investigation, 2015, 125(11):4077-90. [cited by applicant]
Taylor et al., “A DNA-based T cell receptor reveals a role for receptor clustering in ligand discrimination,” Cell, 2017, 169(1):108-19. [cited by applicant]
Thakur et al., “Cancer therapy with bispecific antibodies: Clinical experience,” Jun. 2010, Curr. Opin. Mol. Ther., 12(3):340-349, 16—pages. [cited by applicant]
the-scientist.com [online], “Neoantigens Enable Personalized Cancer Immunotherapy,” Apr. 2017, [retrieved on May 4, 2018], retrieved from: URL<https://www.the-scientist.com/?articles.view/articleNo/49000/title/Neoantige… [cited by applicant]
Thomas et al., “Mesothelin-specific CD8+ T cell responses provide evidence of in vivo cross-priming by antigen-presenting cells in vaccinated pancreatic cancer patients,” The Journal of experimental medicine, 2004, 200(… [cited by applicant]
Thomsen et al., “Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment… [cited by applicant]
Tran et al., “Cancer immunotherapy based on mutation-specific CD4+ T cells in a patient with epithelial cancer,” Science, 2014, 344(6184):641-5. [cited by applicant]
Tran et al., “T-cell transfer therapy targeting mutant KRAS in cancer,” New England Journal of Medicine, 2016, 375(23):2255-62. [cited by applicant]
Tsai et al., “Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity,” PNAS, Feb. 26, 2008, 105(8):3041-3046, 6 pages. [cited by applicant]
Tsukahara et al., “Specific targeting of a naturally presented osteosarcoma antigen, papillomavirus binding factor peptide, using an artificial monoclonal antibody,” Aug. 2014, Journal of Biological Chemistry, 289(32):2… [cited by applicant]
Tumeh et al., “PD-1 blockade induces responses by inhibiting adaptive immune resistance,” Nature, Nov. 27, 2014, 515(7528):568-571. [cited by applicant]
Uhlen et al., “Tissue-based map of the human proteome,” Science, 2015, 347(6220):1260419. [cited by applicant]
Van Allen et al., “Genomic correlates of response to CTLA-4 blockade in metastatic melanoma,” Science, Oct. 2015, 350(6257):207-211. [cited by applicant]
Van Wauwe et al., “OKT3: a monoclonal anti-human T lymphocyte antibody with potent mitogenic properties,” The Journal of Immunology, 1980, 124(6):2708-13. [cited by applicant]
Vauquelin et al., “Exploring avidity: understanding the potential gains in functional affinity and target residence time of bivalent and heterobivalent ligands,” British journal of pharmacology, 2013, 168(8):1771-85. [cited by applicant]
Verma et al., “TCR mimic monoclonal antibody targets a specific peptide/HLA class I complex and significantly impedes tumor growth in vivo using breast cancer models,” Feb. 2010, J. Immunol., 184(4):2156-2165, 11 pages. [cited by applicant]
Vita et al., “The immune epitope database (IEDB): 2018 update,” Nucleic acids research, 2019, 47(D1):D339-43. [cited by applicant]
Vogelstein et al., “Cancer genome landscapes,” Science, 2013, 339(6127):1546-58. [cited by applicant]
Vonderheide et al., “Engineering T cells for cancer: our synthetic future,” Jan. 2014, Immunol Rev., 257(1):7-13, 10 pages. [cited by applicant]
Wang et al., “A naturally processed peptide presented by HLA-A*0201 is expressed at low abundance and recognized by an alloreactive CD8+ cytotoxic T cell with apparent high affinity,” Jun. 1997, J. Immunol., 158(12):579… [cited by applicant]
Wang et al., “Direct Detection and Quantification of Neoantigens,” Cancer Immunology Research, 2019, 7 (11):1748-1754. [cited by applicant]
Wang et al., “Identification of T-cell Receptors Targeting KRAS-Mutated Human Tumors,” Cancer Immunol Res, 2016, 4:204-214. [cited by applicant]
Ward et al., “The Role of Neoantigens in Naturally Occurring and Therapeutically Induced Immune Responses to Cancer,” Adv Immunol, 2016, 130:25-74. [cited by applicant]
Warren et al., “A census of predicted mutational epitopes suitable for immunologic cancer control,” Human Immunol., 2010, pp. 245-254. [cited by applicant]
Watanabe et al., “Expanding the therapeutic window for CAR T cell therapy in solid tumors: the knowns and unknowns of CAR T cell biology,” Frontiers in Immunology, 2018, 9:2486. [cited by applicant]
Webb et al., “Functional and structural characteristics of NY-ESO-1-related HLA A2-restricted epitopes and the design of a novel immunogenic analogue,” Journal of Biological Chemistry, 2004, 279(22):23438-46. [cited by applicant]
Weiner et al., “Antibodies and cancer therapy: versatile platforms for cancer immunotherapy,” May 2010, Nature Reviews Immunology, 10(5):317-327, 26 pages. [cited by applicant]
Wu et al., “Kinetic and structural analysis of mutant CD4 receptors that are defective in HIV gp120 binding,” Proceedings of the National Academy of Sciences, 1996, 93(26):15030-5. [cited by applicant]
Wu et al., “T cell engaging bispecific antibody (T-BsAb): from technology to therapeutics,” Pharmacology & Therapeutics, 2018, 182:161-75. [cited by applicant]
Yadav et al., “Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing,” Nov. 27, 2014, Nature, 515(7528):572-576, 16 pages. [cited by applicant]
Yang et al., “Rab7b, a novel lysosome-associated small GTPase, is involved in monocytic differentiation of human acute promyelocytic leukemia cells,” Biochemical and biophysical research communications, 2004, 318(3):792… [cited by applicant]
Ylera et al., “Off-rate screening for selection of high-affinity anti-drug antibodies,” Oct. 2013, Analytical Biochemistry, 441(2):208-213, 6 pages. [cited by applicant]
Yossef et al., “Enhanced detection of neoantigen-reactive T cells targeting unique and shared oncogenes for personalized cancer immunotherapy,” JCI insight, 2018, 3(19):e122467. [cited by applicant]
Yu et al., “Mutation-specific antibodies for the detection of EGFR mutations in non-small-cell lung cancer,” Clinical Cancer Research, 2009, 15(9):3023-8. [cited by applicant]
Zacharakis et al., “Immune recognition of somatic mutations leading to complete durable regression in metastatic breast cancer,” Nature medicine, 2018, 24(6):724-30. [cited by applicant]
Zhu et al., “Engineering high affinity humanized anti-p185HER2/anti-CD3 bispecific F (ab′) 2 for efficient lysis of p185HER2 overexpressing tumor cells,” International Journal of Cancer, 1995, 62(3):319-24. [cited by applicant]
Zhu et al., “Identification of heavy chain residues in a humanized anti-CD3 antibody important for efficient antigen binding and T cell activation,” The Journal of Immunology, 1995, 155(4):1903-10. [cited by applicant]
Zumrut et al., “Integrating ligand-receptor interactions and in vitro evolution for streamlined discovery of artificial nucleic acid ligands,” Molecular Therapy—Nucleic Acids, 2019, 17:150-63. [cited by applicant]
Duan et al., “T-cell receptor mimic antibodies for cancer immunotherapy,” Molecular Cancer Therapeutics, 20(9):1533-1541, 2021. [cited by applicant]
Extended Search Report in European Appln. No. 22908460.3, mailed on Nov. 13, 2025, 7 pages. [cited by applicant]