Rhodococcus nitrile hydratase
The invention relates to a Rhodococcus polynucleotide cluster which contains nucleotide sequences which encode polypeptides having the activity of a nitrile hydratase, of an auxiliary protein P15K which activates this enzyme and of a cobalt transporter, to transformed microorganisms in which the nucleotide sequences encoding these proteins are present in increased quantity, and to the use of the transformed microorganisms for preparing amides from nitriles.
1. An isolated polynucleotide cluster comprising four gene sequences, wherein said gene sequences encode a first polypeptide, a second polypeptide, an auxiliary protein (P15K) and a cobalt transporter protein, and wherein:
a) said first polypeptide comprises the amino acid sequence of SEQ ID NO:2 and, in the presence of said second polypeptide and auxiliary protein, has nitrile hydratase activity;
b) said second polypeptide comprises the amino acid of SEQ ID NO:3; and, in the presence of said first polypeptide and auxiliary protein, has nitrile hydratase activity;
c) said auxiliary protein comprises the amino acid sequence of SEQ ID NO:6, and, in the presence of said first polypeptide and said second polypeptide, has nitrile hydratase activity and
d) said cobalt transporter protein comprises the amino acid of SEQ ID NO:4, and has cobalt transporter activity.
2. The polynucleotide of claim 1 , wherein said polynucleotide comprises a sequence selected from the group consisting of:
a) a polynucleotide comprising of positions 1 to 708 in the nucleotide sequence SEQ ID NO:1 or a nucleotide sequence which is fully complementary thereto;
b) a polynucleotide comprising a nucleotide sequence which corresponds to the sequence from a) within the bounds of the degeneracy of the genetic code; and
c) a polynucleotide which hybridizes, under stringent conditions with the fully complementary sequences a) or b), wherein said stringent conditions comprise washing in 0.5×SSC at a temperature of 680° C.;
and wherein said sequence encodes the beta subunit of a protein with nitrile hydratase activity.
3. The polynucleotide of claim 1 , wherein said polynucleotide comprises a sequence selected from the group consisting of:
a) a polynucleotide comprising positions 710 to 1327 in the nucleotide sequence SEQ ID NO:1 or in the nucleotide sequence which is fully complementary thereto;
b) a polynucleotide comprising a nucleotide sequence which corresponds to the sequence from a) within the bounds of the degeneracy of the genetic code; and
c) a polynucleotide which hybridizes, under stringent conditions, with the fully complementary sequences a) or b) wherein said stringent conditions comprise washing in 0.5×SSC at a temperature of 680° C.;
and wherein said sequence encodes the alpha subunit of a protein with nitrile hydratase activity.
4. The polynucleotide of claim 1 , wherein said polynucleotide comprises a sequence selected from the group consisting of:
a) a polynucleotide comprising positions 1324 to 1737 in the nucleotide sequence SEQ ID NO:1 or in the nucleotide sequence which is fully complementary thereto;
b) a polynucleotide comprising a nucleotide sequence which corresponds to the sequence from a) within the bounds of the degeneracy of the genetic code; and
c) a polynucleotide which hybridizes, under stringent conditions, with the fully complementary sequences a) or b) wherein said stringent conditions comprise washing in 0.5×SSC at a temperature of 680° C.;
and wherein said sequence encodes a protein which, in the presence of said first polypeptide and said second polypeptide, has nitrile hydratase activity.
5. The polynucleotide of claim 1 , wherein said polynucleotide comprises a sequence selected from the group consisting of:
a) a polynucleotide comprising positions 2076 to 3146 in the nucleotide sequence SEQ ID NO:1 or in the nucleotide sequence which is fully complementary thereto;
b) polynucleotide comprising a nucleotide sequence which corresponds to the sequence from a) within the bounds of the degeneracy of the genetic code; and
c) polynucleotide which hybridizes, under stringent conditions, with the fully complementary sequences a) or b) wherein said stringent conditions comprise washing in 0.5×SSC at a temperature of 680° C.;
and wherein said sequence encodes a protein with the activity of a cobalt transporter protein.
6. A vector comprising a sequence selected from the group consisting of:
a) the polynucleotide sequence of claim 1 ;
b) the polynucleotide sequence of SEQ ID NO:25; and
c) the polynucleotide sequence of SEQ ID NO:24.
7. An isolated host cell transformed or transfected by introducing the vector of claim 6 .
8. The host cell of claim 7 , wherein said host cell is of the family Enterobacteriaceae.
9. A process for preparing a nitrile hydratase, comprising:
a) fermenting a microorganism in which the polynucleotides of paragraphs a)-c) of claim 1 are overexpressed, said fermentation being carried out in the presence of from 0.15 to 4 mM Co 2+ , and under conditions which lead to the formation of the nitrile hydratase; and
b) allowing said nitrile hydratase to accumulate in said microorganism.
10. The process of claim 9 , further comprising:
c) isolating said nitrile hydratase from the microorganism of step b).
11. The process of claim 9 , wherein said microorganism also overexpresses a polynucleotide encoding a cobalt transporter protein, wherein said cobalt transport protein comprises the amino acid of SEQ ID NO:4, and has cobalt transporter activity.
12. The process of claim 11 , further comprising:
c) isolating said nitrile hydratase from the microorganism of step b).
13. The process of claim 9 , wherein said microorganism is a host cell comprising a polynucleotide selected from the group consisting of:
a) a polynucleotide comprising four gene sequences, wherein said gene sequences encode a first polypeptide, a second polypeptide, an auxiliary protein (P15K) and a cobalt transporter protein, and wherein:
i) said first polypeptide comprises the amino acid sequence of SEQ ID NO:2 and, in the presence of said second polypeptide and auxiliary protein, has nitrile hydratase activity;
ii) said second polypeptide comprises the amino acid of SEQ ID NO:3; and, in the presence of said first polypeptide and auxiliary protein, has nitrile hydratase activity;
iii) said auxiliary protein comprises the amino acid sequence of SEQ ID NO:6, and, in the presence of said first polypeptide and said second polypeptide, has nitrile hydratase activity;
iv) said cobalt transporter protein comprises the amino acid of SEQ ID NO:4, and has cobalt transporter activity;
b) the nucleotide sequence of SEQ ID NO:25; and
c) the nucleotide sequence of SEQ ID NO:24.
14. The process of claim 13 , wherein said nitrile hydratase converts α-aminonitriles with a specific activity of >50 U/mg of dry biomass.