IP Library Granted Patent US 7,589,101
Granted Patent B2
US 7,589,101 · App. 12/063,550 · Granted Sep 15, 2009

Compounds and compositions as protein kinase inhibitors

Assignees: IRM LLC; The Scripps Research Institute
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Quick Facts
Patent No.
US 7,589,101
App. No.
12/063,550
Granted
Sep 15, 2009
Kind
B2
Abstract

The invention provides a novel class of compounds of formula I, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with abnormal or deregulated kinase activity, particularly diseases or disorders that involve abnormal activation of the AbI, Bcr-AbI, Aurora-A, SGK, Tie-2, Trk-B, FGFR3, c-kit, b-RAF, c-RAF, DYRK2, Fms, Fyn and PDGFRalpha and PDGFR&bgr; kinases.

Claims (26)

1. A compound of Formula I:

in which:

X 1 is selected from CH and N;

Y is selected from S and NR 5 ; wherein R 5 is selected from hydrogen and C 1-6 alkyl;

Z is selected from C and S(O);

R 1 is selected from hydrogen and C 1-6 alkyl;

R 2 is selected from C 6-12 aryl and —NR 3 R 4 ;

R 3 is selected from hydrogen and C 1-6 alkyl;

R 4 is —XR 5 ; wherein X is selected from a bond, C 1-6 alkylene and C 1-10 heterarylene; wherein R 5 is selected from C 6-10 aryl and C 1-10 heteroaryl;

wherein said aryl or heteroaryl of R 5 is optionally substituted with 1 to 3 radicals independently selected from C 1-6 alkyl, halo-substituted-C 1-6 alkyl, C 3-8 heterocycloalkyl, —C(O)NR 6 R 7 and —NR 6 C(O)R 7 ; wherein R 6 is selected from hydrogen and C 1-6 alkyl; and R 7 is selected from C 6-10 aryl and C 1-10 heteroaryl;

wherein said aryl or heteroaryl of R 7 is optionally substituted with 1 to 3 radicals independently selected from —R 8 and —OR 8 ; wherein R 8 is selected from C 1-6 alkyl, halo-substituted-C 1-6 alkyl, C 6-12 aryl, C 1-10 heteroaryl and C 3-8 heterocycloalkyl-C 0-4 alkyl; wherein said aryl, heteroaryl and heterocycloalkyl substituents of R 8 are optionally substituted with C 1-6 alkyl;

or R 3 and R 4 , together with the atoms to which R 3 and R 4 are attached, form C 3-8 heterocycloalkyl optionally substituted with —C(O)NR 6 R 9 ; wherein R 6 is selected from hydrogen and C 1-6 alkyl; and R 9 is selected from C 6-10 aryl and C 1-10 heteroaryl; and the pharmaceutically acceptable salts thereof.

2. The compound of claim 1 of Formula Ia:

in which:

X 1 is selected from CH and N;

Y is selected from S and NR 5 ; wherein R 5 is selected from hydrogen and C 1-6 alkyl;

n is selected from 0, 1 and 2;

R 1 is selected from hydrogen and C 1-6 alkyl; and

R 12 is selected from hydrogen, C 1-6 alkyl, halo-substituted-C 1-6 alkyl, C 3-8 heterocycloalkyl, —C(O)NR 6 R 7 and —NR 6 C(O)R 7 ; wherein R 6 is selected from hydrogen and C 1-6 alkyl; and R 7 is selected from C 6-10 aryl and C 1-10 heteroaryl;

wherein said aryl or heteroaryl of R 7 is optionally substituted with 1 to 3 radicals independently selected from —R 8 and —OR 8 ; wherein R 8 is selected from C 1-6 alkyl, halo-substituted-C 1-6 alkyl, C 6-12 aryl, C 1-10 heteroaryl and C 3-8 heterocycloalkyl-C 0-4 alkyl; wherein said aryl, heteroaryl and heterocycloalkyl substituents of R 8 are optionally substituted with C 1-6 alkyl.

3. The compound of claim 2 in which: X 1 is selected from CH and N; Y is selected from S and N(CH 3 ); and R 1 is hydrogen.

4. The compound of claim 3 in which R 12 is hydrogen, methyl, —C(O)NHR 7 , —NHC(O)R 7 , —N(CH 3 )C(O)R 7 and morpholino; wherein R 7 is selected from phenyl and isoxazolyl; wherein said phenyl or oxazolyl of R 7 is optionally substituted with 1 to 2 radicals selected from iso-butyl, trifluoromethyl, phenoxy, ethyl-piperazinyl-methyl, methyl-piperazinyl-methyl, methyl-imidazolyl and morpholino-methyl.

5. The compound of claim 1 selected from: 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 1-Methyl-1,6-dihydro-1,5,6-triaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid (4-morpholin-4-yl-phenyl)-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid phenylamide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid 3-trifluoromethyl-benzylamide; Morpholin-4-yl-(6H-1-thia-5,6-diaza-as-indacen-2-yl)-methanone; 2-Benzenesulfonyl-1-methyl-1,6-dihydro-1,5,6-triaza-as-indacene; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [2-methyl-5-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [2-methyl-5-(3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {2-methyl-5-[methyl-(3-trifluoromethyl-benzoyl)-amino]-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {5-[4-(4-ethyl-piperazin-1-ylmethyl)-3-trifluoromethyl-phenylcarbamoyl]-2-methyl-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {2-methyl-5-[3-(4-methyl-imidazol-1-yl)-5-trifluoromethyl-benzoylamino]-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [2-methyl-5-(3-morpholin-4-ylmethyl-5-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {2-methyl-5-[4-(2-methyl-imidazol-1-yl)-3-trifluoromethyl-benzoylamino]-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {2-methyl-5-[4-(4-methyl-piperazin-1-ylmethyl)-3-trifluoromethyl-phenylcarbamoyl]-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [5-(5-tert-butyl-isoxazol-3-ylcarbamoyl)-2-methyl-phenyl]-amide; 4-(6H-1-Thia-5,6-diaza-as-indacene-2-carbonyl)-piperazine-1-carboxylic acid (4-phenoxy-phenyl)-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {1-[3-(3-trifluoromethyl-benzoylamino)-phenyl]-1H-imidazol-2-yl}-amide; 1-Methyl-1,6-dihydro-1,5,6-triaza-as-indacene-2-carboxylic acid [2-methyl-5-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 1-Methyl-1,6-dihydro-1,5,6-triaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 1-Methyl-1,6-dihydro-1,5,6-triaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6,7-triaza-as-indacene-2-carboxylic acid [3-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6,7-triaza-as-indacene-2-carboxylic acid [2-methyl-5-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6,7-triaza-as-indacene-2-carboxylic acid [2-methyl-5-(4-morpholin-4-ylmethyl-3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-methoxy-5-(3-trifluoromethyl-benzoylamino)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-methoxy-5-(3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [3-methoxy-5-(4-morpholin-4-ylmethyl-3-trifluoromethyl-phenylcarbamoyl)-phenyl]-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {3-methoxy-5-[3-(4-methyl-imidazol-1-yl)-5-trifluoromethyl-phenylcarbamoyl]-phenyl}-amide; 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid {3-[4-(4-ethyl-piperazin-1-yl)-3-trifluoromethyl-phenylcarbamoyl]-5-methoxy-phenyl}-amide; and 6H-1-Thia-5,6-diaza-as-indacene-2-carboxylic acid [2-methyl-5-(5-trifluoromethyl-1H-benzoimidazol-2-yl)-phenyl]-amide.

6. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 in combination with a pharmaceutically acceptable excipient.

7. A method for the inhibition of kinase activity, which method comprises administering to an animal a compound of claim 1 .

8. The method of claim 7 in which the kinase is selected from Abl, Bcr-Abl, Aurora-A, SGK, Tie-2, Trk-B, FGFR3, c-kit, b-RAF, c-RAF, DYRK2, Fins, Fyn and PDGFRα and PDGFRβ.

Assignments (3)
CONFIRMATORY LICENSE Recorded Jul 13, 2021
From: SCRIPPS RESEARCH INSTITUTE
To: UNITED STATES DEPARTMENT OF ENERGY
Reel/Frame 056901/0077 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 9, 2008
From: REN, PINGDA; GRAY, NATHANAEL S.
To: IRM LLC
Reel/Frame 021213/0237 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 9, 2008
From: OKRAM, BARUN
To: SCRIPPS RESEARCH INSTITUTE, THE
Reel/Frame 021213/0394 →
Continuity (2)
Provisional Application 6070891500 · Aug 16, 2005
Related Publication 20080287432A1 · Nov 20, 2008