Compositions and methods for the synthesis of APPA-containing peptides
The disclosure of the present application provides polypeptide sequences and nucleotide sequences coding for the polypeptide sequences of proteins used in the production of APPA-containing peptides. In at least one embodiment of the present disclosure, an isolated nucleic acid is disclosed which comprises a nucleotide sequence encoding a polypeptide having a sequence identity of 60 percent or greater to an amino acid sequence selected from the group consisting of SEQ ID NOS: 2-13, and 15-23.
1. An isolated nucleic acid comprising a first nucleotide sequence encoding a first polypeptide having a first sequence identity of at least 70 percent to an amino acid sequence selected from the group consisting of SEQ ID NOS: 2-3 and 5-13, or having a first sequence identity of at least 71 percent to an amino acid sequence of SEQ ID NO: 4.
2. The isolated nucleic acid of claim 1 , wherein the first sequence identity is at least 71% to an amino acid sequence of SEQ ID NOS: 2-13.
3. The isolated nucleic acid of claim 1 , wherein the first sequence identity is at least 70 percent to SEQ ID NO: 7.
4. The isolated nucleic acid of claim 3 , further comprising a second nucleotide sequence encoding a second polypeptide having a second sequence identity of 70 percent or greater to SEQ ID NO: 8.
5. The isolated nucleic acid of claim 4 , further comprising a third nucleotide sequence encoding a third polypeptide having a third sequence identity of at least 70 percent to a third amino acid selected from the group consisting of SEQ ID NOS: 2-6 and 9-13.
6. A vector comprising an isolated nucleic acid comprising a first nucleotide sequence encoding a first polypeptide having a first sequence identity of 70 percent or greater to an amino acid sequence selected from the group consisting of SEQ ID NOS: 2-3 and 5-13, or having a first sequence identity of 71 percent or greater to an amino acid sequence of SEQ ID NO. 4.
7. The vector of claim 6 , wherein the vector is capable of integration into it host cell genome.
8. The vector of claim 6 , wherein the vector is selected from the group consisting of a bacterial vector, a mammalian vector, an insect vector, and a yeast vector.
9. A transformed cell comprising: a vector comprising an isolated nucleic acid comprising a nucleotide sequence encoding a polypeptide having a sequence identity of 70 percent or greater to an amino acid sequence selected from the group consisting of SEQ ID NOS: 2-3 and 5-13, or a sequence identity of 71 percent or greater to an amino acid sequence of SEQ ID NO. 4;
wherein the transformed cell is capable of producing an APPA-containing peptide.
10. The transformed cell of claim 9 , wherein the APPA-containing peptide is a rhizocticin.
11. The transformed cell of claim 10 , wherein the rhizocticin is rhizocticin B.
12. The transformed cell of claim 9 , wherein the transformed cell is selected from a group consisting of a Gram negative organism, a Gram positive organism, a mammalian cell, an insect cell, and a yeast cell.
13. The transformed cell of claim 9 , wherein the transformed cell is a member of the genus Bacillus.
14. The transformed cell of claim 9 , wherein the transformed cell is a member of the genus Streptomyces.
15. A method for producing an APPA-containing peptide, the method comprises the steps of:
transforming a host cell with an isolated nucleic acid comprising a nucleotide sequence encoding a polypeptide having a sequence identity of 70 percent or greater to an amino acid sequence selected from the group consisting of SEQ ID NOS: 2-3 and 5-13, or a sequence identity of 71 percent or greater to an amino acid sequence of SEQ ID NO. 4; and
growing the transformed host cell under conditions to produce an APPA-containing peptide.
16. The method of claim 15 , wherein the untransformed host cell is not capable producing the APPA-containing peptide.
17. The method of claim 15 , wherein the APPA-containing peptide is a rhizocticin.
18. The method of claim 15 , further comprising the step of isolating the APPA-containing peptide from the transformed host cell or from the supernatant of the transformed cell.
19. The method of claim 18 , further comprising the step of replacing at least one amino acid of the isolated APPA-containing peptide.