Methods for diagnosing stomach cancer using MicroRNAs
The present invention provides novel methods and compositions for the diagnosis and treatment of solid cancers. The invention also provides methods of identifying inhibitors of tumorigenesis.
1. A method of diagnosing a subject having stomach cancer, comprising:
obtaining a nucleic acid-containing test sample from a subject suspected of having stomach cancer, wherein the sample is extracted from stomach cells;
measuring, by hybridization assay, a level of at least one miR gene product of miR-21 in the test sample;
comparing the level of at least one miR gene product of miR-21 in the test sample from the subject to a control level of non-cancerous stomach cells of at least one corresponding miR gene product of miR-21; and
diagnosing the subject as having stomach cancer, if the level of the at least one miR gene product in the test sample from the subject is miR-21 and is greater than the control level for the corresponding miR gene product of miR-21.
2. A method of diagnosing a subject having stomach cancer, comprising:
a.) reverse transcribing at least one miR gene product of miR-21 from a nucleic acid-containing test sample from stomach tissue of the subject to provide at least one corresponding miR gene product target oligonucleotides;
b.) hybridizing the at least one corresponding miR gene product target oligodeoxynucleotides to a microarray comprising miRNA-specific probe oligonucleotides that include at least one corresponding miRNA-specific probe oligonucleotides, specific for miR-21, to provide a miR-21 hybridization profile for the test sample;
c.) comparing the test sample miR-21 hybridization profile to at least one miR-21 control hybridization profile of normal stomach tissue; and
d.) diagnosing the subject as having stomach cancer if the level of at least one miR-21 gene product in the test sample is greater than the control level of corresponding miR-21 gene product.
3. A method of diagnosing a subject having stomach cancer, comprising:
measuring, by hybridization assay, the level of at least miR-21 gene product in a test sample from stomach cells of a subject;
comparing the measured level of at least miR-21 gene product in a test sample from a subject to a control level of non-cancerous stomach cells for at least one miR-21 gene product; and
diagnosing the subject as having stomach cancer, if the level of at least miR-21 gene product in the test sample from the subject is greater than the control level of miR-21 gene product.
4. A method of diagnosing a subject having stomach cancer, comprising:
a.) reverse transcribing at least miR-21 gene product from a test sample from stomach cells of a subject to provide at least one corresponding miR-21 gene product target oligonucleotide;
b.) hybridizing the at least one miR-21 gene product target oligonucleotide to a microarray comprising miRNA-specific probe oligonucleotides that include at least one corresponding miR-21 RNA specific probe oligonucleotide to provide a miR-21 hybridization profile for the test sample;
c.) comparing the test sample miR-21 hybridization profile to at least one control miR-21 hybridization profile, wherein the control is derived from miRNA expression of non-cancerous stomach cells; and
d.) diagnosing the subject as having stomach cancer if the level of at least one miR-21 gene product in the hybridization profile from the test sample is greater than the level of corresponding miR-21 gene product in the hybridization profile from the control miR-21 hybridization profile.
5. A method for detecting likelihood of stomach cancer in a subject, the method comprising:
detecting one or both of the presence and amount of one or more biomarkers in a biological sample comprised of stomach cells from the subject, wherein at least one of the biomarkers is a miR-21 gene product; and
classifying the subject as likely to have stomach cancer if the amount of the miR-21 gene product is increased in the biological sample as compared to a non-stomach cancer reference amount of a corresponding miR-21 gene product biomarker.
6. The method of claim 1 , wherein the subject is a human.
7. A method of facilitating a diagnosis of a stomach cancer in a subject, comprising:
obtaining a test sample from gastric cells of the subject;
measuring a level of expression of; and
comparing the level of miR-21 with a corresponding pre-determined level for miR-21, the pre-determined level being obtained from a control sample from a control subject who has stomach cancer, wherein having a level of miR-21 that is at or above the corresponding predetermined level indicates that the subject has stomach cancer.