IP Library Granted Patent US 8,716,472
Granted Patent B2
US 8,716,472 · App. 12/526,696 · Granted May 6, 2014

Tripodal cyclohexane derivatives and their use as carbohydrate receptors

Inventors: Benjamin L. Miller (Penfield, NY); Prakash B. Palde (Rochester, NY); Peter C. Gareiss (Rochester, NY)
Assignee: University of Rochester
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Quick Facts
Patent No.
US 8,716,472
App. No.
12/526,696
Granted
May 6, 2014
Kind
B2
Abstract

A tri-podal compound according to formula (I) wherein, each Z is the same and is a substituted or unsubstituted N-heteroaromatic single-, multiple-, or fused-ring; and each A is the same, and can represent a direct bond between the cyclohexane ring and Z, or a carboxamide group (—C(O)—N(H)—). Use of the compounds in combinatorial libraries, methods of making the tripodal compounds, sensor devices for detecting carbohydrate targets, and methods of using the tripodal compounds to detect carbohydrate targets in a sample are also disclosed.

Claims (72)

1. A compound according to formula (I)

wherein,

each Z is the same and is a substituted or unsubstituted N-heteroaromatic single- or multiple-ring selected from the group of pyridine, pyrazine, pyrimidine, pyridazine, imidazole, pyrrole, oxazole, isooxazole, triazine, thiazole, indazole, purine, quinoline, isoquinoline, quinoxaline, quinazoline, cinnoline, benzoxazole, benzisooxazole, and benzothiazole,

each A is a direct bond between the cyclohexane ring and Z, and

the N-heteroaromatic ring is attached directly to the cyclohexane ring through a carbon atom that is in adjacent position to a nitrogen heteroatom in the N-heteroaromatic ring.

2. The compound according to claim 1 wherein the compound is a substantially pure cis stereoisomer.

3. The compound according to claim 1 , wherein Z is an N-heteroaromatic single-ring.

4. The compound according to claim 1 , wherein Z is an N-heteroaromatic multiple-ring.

5. The compound according to claim 1 wherein Z is selected from the group consisting of pyridine, pyrazine, pyrimidine, pyridazine, imidazole, pyrrole, oxazole, isooxazole, triazine, and thiazole comprising one to four substituents independently selected from the group consisting of

—COO—R 1 where R 1 for each substituent is independently —H or a C1 to C18 hydrocarbon that is saturated or unsaturated;

-(hydrocarbon) n -R 2 where for each substituent the hydrocarbon is saturated or unsaturated, n is an integer from 0 to 20, and R 2 is independently —OH, —CH 3 , or —COOH; and

—CN.

6. The compound according to claim 1 , wherein Z is selected from the group consisting of indazole, purine, quinoline, isoquinoline, quinoxaline, quinazoline, cinnoline, benzoxazole, benzisooxazole, and benzothiazole comprising one to six substituents independently selected from the group consisting of

—COO—R 1 where R 1 for each substituent is independently —H or a C1 to C18 hydrocarbon that is saturated or unsaturated;

-(hydrocarbon) n -R 2 where for each substituent the hydrocarbon is saturated or unsaturated, n is an integer from 0 to 20, and R 2 is independently —OH, —CH 3 , or —COOH; and

—CN.

7. The compound according to claim 1 wherein the compound is

1,3,5-tris-pyrazin-2-yl cyclohexane;

1,3,5-tris-pyrimidin-2-yl cyclohexane;

1,3,5-tris[1,3,5-triazin-2-yl]cyclohexane;

1,3,5-tris-pyridazin-3-yl cyclohexane;

1,3,5-tris-imidazol-2-yl cyclohexane;

1,3,5-tris-pyridin-2-yl cyclohexane;

1,3,5-tris-(4-cyano)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-carboxylic acid)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-ethyl ester)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-ethyl-2-acetamido)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methyl)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methoxy)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-amino)pyridin-2-yl cyclohexane;

1,3,5-tris-(4-cyano-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-cyano-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-cyano-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane;

1,3,5-tris-(3,5-methoxy-4-cyano-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(3,5-methoxy-4-cyano-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(3,5-methoxy-4-cyano-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane;

1,3,5-tris-(4-carboxylic acid-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-carboxylic acid-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-carboxylic acid-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methyl-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methyl-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methyl-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methoxy-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methoxy-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-methoxy-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane;

1,3,5-tris-(4-amino-6-(2-hydroxyethylamino))pyridin-2-yl cyclohexane;

1,3,5-tris-(4-amino-6-(3-hydroxypropylamino))pyridin-2-yl cyclohexane; or

1,3,5-tris-(4-amino-6-(N-(pyridin-2-ylmethyl)amino)-pyridin-2-yl cyclohexane.

8. A method of making a compound according to formula (I) of claim 1 , said method comprising:

reacting, via tri-directional Minisci reaction, 1,3,5-tricarboxylic acid cyclohexane and a substituted or unsubstituted N-heteroaromatic compound (H—Z) where Z is defined as in claim 1 .

9. The method according to claim 8 wherein the 1,3,5-tricarboxylic acid cyclohexane is a substantially pure cis stereoisomer.

10. The method according to claim 8 wherein said tri-directional Minisci reaction comprises a single-step, tri-directional Minisci reaction between 1,3,5-tricarboxylic acid cyclohexane and H—Z, and the one or more substituents, when present, is selected from the group of

—COO—R 1 where R 1 for each substituent is independently —H or a C1 to C18 hydrocarbon that is saturated or unsaturated, and

—CN.

11. A compound according to formula (II):

wherein,

each Z is the same and is a substituted or unsubstituted N-heteroaromatic single or multiple-ring;

each A is the same, and is a direct bond between the cyclohexane ring and Z;

the peptide comprises 2 to 5 amino acids, and at least one of the amino acids comprises a thiol group or an unsaturated hydrocarbon sidechain; and

Q is H.

12. A method of detecting the presence of a carbohydrate in a sample comprising:

providing a sample containing a carbohydrate of interest;

exposing the sample to a compound according to claim 1 ; and

determining whether the compound binds to the carbohydrate of interest.

13. A compound according to formula (I)

wherein,

each A is a direct bond between the cyclohexane ring and Z;

each Z is the same and is a substituted or unsubstituted N-heteroaromatic single- or multiple-ring selected from the group of pyridine, pyrazine, pyrimidine, pyridazine, imidazole, pyrrole, oxazole, isooxazole, triazine, thiazole, indazole, purine, quinoline, isoquinoline, quinoxaline, quinazoline, cinnoline, benzoxazole, benzisooxazole, and benzothiazole, comprising one or more substituents independently selected from the group consisting of

—COO—R 1 where R 1 for each substituent is independently —H or a C1 to C18 hydrocarbon that is saturated or unsaturated,

-(hydrocarbon) n -R 2 where for each substituent the hydrocarbon is saturated or unsaturated, n is an integer from 0 to 20, and R 2 is independently —OH, —CH 3 , or —COOH, and

—CN; and

the N-heteroaromatic ring is attached directly to the cyclohexane ring through a carbon atom that is in adjacent position to a nitrogen heteroatom in the N-heteroaromatic ring.

Assignments (2)
CONFIRMATORY LICENSE Recorded May 22, 2013
From: UNIVERSITY OF ROCHESTER
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 030486/0328 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 8, 2010
From: MILLER, BENJAMIN L.; PALDE, PRAKASH B.; GAREISS, PETER C.
To: UNIVERSITY OF ROCHESTER
Reel/Frame 024954/0697 →
Continuity (2)
Provisional Application 60829595 · Oct 16, 2006
Related Publication 20100041568A1 · Feb 18, 2010