Networkbased pathology system with desktop slide scanner

1. A method for processing, saving and viewing a digital image of a sample, comprising:

providing an acquisition computer connected to a network server in communication with a computer network;

inserting at least one sample into a desktop digital scanner connected to the acquisition computer;

the acquisition computer generating a pre-scan of the sample at a pre-scan magnification and a pre-scan resolution, the pre-scan comprising a plurality of sequentially scanned image tiles;

the acquisition computer uploading each of the plurality of image tiles to the network server as each image tile is scanned;

the network server analyzing the image tiles while the pre-scan is being generated to identify an area of interest in the pre-scan;

the acquisition computer generating a local scan of the area of interest at a second magnification higher than the pre-scan magnification, the local scan comprising a plurality of local image tiles;

the acquisition computer uploading each of the plurality of local image tiles to the network server while the local scan is being generated, each local image tile being viewable by a client computer in communication with the computer network in real time while the plurality of local image tiles are being uploaded;

the network server stitching each local tile image together as the image tiles are being uploaded and assembling a raw final image of the local scan from a mosaic of the plurality of local image tiles; and

saving the raw final image on the network server independent of whether the raw final image is saved on the acquisition computer.

2. The method of claim 1 , further comprising:

sharpening each local image tile to create a plurality of sharpened local image tiles while the plurality of local image tiles are being uploaded;

the network server assembling a sharpened final image from the plurality of sharpened local image tiles while the plurality of local image tiles are being uploaded; and

the client computer selecting between the raw final image and the sharpened final image for viewing immediately without saving the raw final image and the sharpened final image locally and without transferring the entire raw final image or the entire sharpened final image after the acquisition computer generates the local scan.

3. A method for remotely analyzing a digital image of a sample, comprising:

providing an acquisition computer connected to a network server in communication with a computer network;

inserting at least one sample into a desktop digital scanner connected to the acquisition computer, the desktop digital scanner comprising a microscope and a microscope stage;

generating a pre-scan of a sample on the microscope stage at a first magnification, wherein the pre-scan comprises a plurality of image tiles;

providing a client computer remote from the acquisition computer and connected to the computer network;

remotely viewing on the client computer the plurality of image tiles while the pre-scan is being generated to identify areas of interest in the sample;

generating a live stream of the areas of interest of the pre-scan at a second magnification greater than the first magnification by sequentially scanning and stitching the local image tiles together in real time as the image tiles are being uploaded; and

remotely instructing the desktop digital scanner to move the microscope stage to analyze different portions of the areas of interest in real time.

4. The method of claim 3 , further comprising using the client computer to remotely focus the microscope on regions of varying depth in the areas of interest in real time.

5. The method of claim 3 , wherein the desktop scanner further comprises an inker that marks the sample in the areas of interest identified.