Connexin mutation detection for lymphatic variation and disease
Methods are provided for identifying risk of developing lymphedema, including primary and secondary edema. The methods comprise identifying the presence in a biological sample of a polymorphism in one or more of GJA4, GJA5 and GJC2, resulting in a functional mutation of one or more of connixin 37 (Cx37), Cx40 or Cx47.
1. A method of detecting a mutation in a GJC2 nucleic acid comprising:
contacting a nucleic acid sample obtained from a human patient with an oligonucleotide that specifically hybridizes to a mutant GJC2 nucleic acid comprising a T allele at position 953 of SEQ ID NO: 2 but not to a wild type GJC2 nucleic acid; and
detecting the T allele at position 953 of SEQ ID NO: 2 in the sample when a hybrid is formed between the oligonucleotide and the mutant GJC2 nucleic acid.
2. The method of claim 1 wherein the oligonucleotide is utilized in a detection method selected from the group consisting of microarray methods, sequencing methods, hybridization methods, and amplification methods.
3. A method of identifying a functional mutation in Cx47, comprising:
isolating a portion of GJC2 encoding a mutation in SEQ ID NO: 1 from a human patient with lymphedema;
introducing into a cell the portion of GJC2 encoding a mutation in SEQ ID NO: 1;
performing one or more of a plaque assay, an electric coupling assay, a wound assay and a dye spread assay on the cell; and
determining that the mutation in GJC2 results in a functional mutation in Cx47 when the mutation alters gap junction function as measured by two or more of the assays compared to a cell comprising a sequence encoding SEQ ID NO: 1.