Promoter-regulated differentiation-dependent self-deleting cassette
Targeting constructs and methods of using them are provided for differentiation-dependent modification of nucleic acid sequences in cells and in non-human animals. Targeting constructs comprising a promoter operably linked to a recombinase are provided, wherein the promoter drives transcription of the recombinase in an differentiated cell but not an undifferentiated cell. Promoters include Blimp1, Prm1, Gata6, Gata4, Igf2, Lhx2, Lhx5, and Pax3. Targeting constructs with a cassette flanked on both sides by recombinase sites can be removed using a recombinase gene operably linked to a 3′-UTR that comprises a recognition site for an miRNA that is transcribed in undifferentiated cells but not in differentiated cells. The constructs may be included in targeting vectors, and can be used to automatically modify or excise a selection cassette from an ES cell, a non-human embryo, or a non-human animal.
1. A targeting construct, comprising: first and second targeting arms flanking a cassette, wherein the cassette is flanked by first and second recombinase recognition sites oriented to direct an excision, and comprises
a) a nucleic acid sequence encoding a selectable marker; and
b) a first promoter operably linked to a recombinase gene,
wherein the recombinase gene encodes a recombinase that recognizes the first and the second recombinase recognition sites,
wherein the first promoter is the Blimp1 promoter SEQ ID NO:2 or the Blimp1 promoter SEQ ID NO:3,
wherein the first promoter drives expression of the recombinase gene in differentiated cells and does not drive expression of the recombinase gene in undifferentiated cells.
2. The targeting construct of claim 1 , further comprising a reporter gene between the first targeting arm and the first recombinase recognition site.
3. The targeting construct of claim 1 , wherein the first and the second recombinase recognition sites are lox sites, and the recombinase gene encodes a Cre recombinase.
4. The targeting construct of claim 1 , further comprising a second promoter, wherein the second promoter is operably linked to the nucleic acid sequence encoding the selectable marker.
5. The targeting construct of claim 1 , wherein the first promoter is the Blimp1 promoter SEQ ID NO:2.
6. The targeting construct of claim 1 , wherein the first promoter is the Blimp1 promoter SEQ ID NO:3.
7. A mouse embryonic stem (ES) cell comprising the targeting construct of claim 1 .
8. The mouse ES cell of claim 7 , wherein the targeting construct further comprises a reporter gene between the first targeting arm and the first recombinase recognition site.
9. The mouse ES cell of claim 7 , wherein the first and the second recombinase recognition sites are lox sites, and the recombinase gene encodes a Cre recombinase.
10. The mouse ES cell of claim 7 , wherein the targeting construct further comprises a second promoter, wherein the second promoter is operably linked to the nucleic acid sequence encoding the selectable marker.
11. The mouse ES cell of claim 7 , wherein the first promoter is the Blimp1promoter SEQ ID NO:2.
12. The mouse ES cell of claim 7 , wherein the first promoter is the Blimp1 promoter SEQ ID NO:3.