Method of purifying HIV/SIV Nef from exosomal fusion proteins
The present application relates to methods of producing exosomes. The application also provides a method for preparing a protein composition comprising culturing an exosome-producing cell expressing a Nef-fusion protein comprising a Nef-derived peptide fused to a protein of interest; isolating exosomes from the exosome-producing cell culture; and purifying the protein of interest from the isolated exosomes. The application further discloses compositions that comprise exosomes containing the Nef-fusion protein, as well as methods of using the Nef-fusion protein and exosomes containing the Nef-fusion protein.
1. A method for preparing a protein composition, comprising:
(a) culturing exosome-producing cells expressing a Nef-fusion protein comprising a Nef peptide fragment fused to a protein of interest, wherein the Nef-fusion protein comprises a protease cleavage site engineered to promote release of the protein of interest from the Nef peptide fragment;
(b) isolating exosomes from said cultured exosome-producing cells;
(c) cleaving the protein of interest from the Nef peptide fragment; and
(d) purifying said protein of interest from the isolated exosomes and the Nef peptide fragment,
wherein said Nef peptide fragment consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 3, 4, 5 and 6.
2. The method of claim 1 , wherein said Nef peptide fragment consists of the amino acid sequence of SEQ ID NO:3.
3. The method of claim 1 , wherein said Nef peptide fragment consists of the amino acid sequence of SEQ ID NO:4.
4. The method of claim 1 , wherein said Nef peptide fragment consists of the amino acid sequence of SEQ ID NO:5.
5. The method of claim 1 , wherein said Nef peptide fragment consists of the amino acid sequence of SEQ ID NO:6.
6. The method of claim 1 , wherein said Nef fusion protein further comprises an amino acid sequence encoding a functional domain selected from the group consisting of affinity tag, targeting domain, reporter, enzyme and combination thereof.
7. The method of claim 1 , wherein said exosome-producing cell is stably transformed with a vector expressing said Nef-fusion protein.
8. The method of claim 1 , wherein said exosome-producing cell is transiently transfected with a vector expressing said Nef-fusion protein.
9. The method of claim 1 , wherein the protein of interest is not green fluorescent protein.
10. The method of claim 1 , wherein the protein of interest is purified at an industrial scale.
11. The method of claim 10 , wherein the protein of interest is purified from an exosome-producing cell stably transformed with a vector expressing the Nef-fusion protein at a level of at least 5 mg per liter of the exosome-producing cells.