IP Library Granted Patent US 9,828,391
Granted Patent B2
US 9,828,391 · App. 15/212,959 · Granted Nov 28, 2017

Beta-lactamase inhibitors

Inventors: Christopher J. Burns (Malvern, PA); Denis Daigle (Street, MD); Bin Liu (Plainsboro, NJ); Daniel McGarry (Malvern, PA); Daniel C. Pevear (Downingtown, PA); Robert E. Lee Trout (Collegeville, PA)
Assignee: VENATORX PHARMACEUTICALS, INC.
C07F5/025A61K9/0019A61K9/0053A61K31/69A61K45/06C07F5/027C07F5/04
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Quick Facts
Patent No.
US 9,828,391
App. No.
15/212,959
Granted
Nov 28, 2017
Kind
B2
Abstract

Described herein are compounds and compositions that modulate the activity of beta-lactamases. In some embodiments, the compounds described herein inhibit beta-lactamase. In certain embodiments, the compounds described herein are useful in the treatment of bacterial infections.

Claims (62)

1. A method of treating an upper or lower respiratory tract infection, a urinary tract infection, an intra-abdominal infection, or a skin infection; the method comprising administering to a subject in need thereof a therapeutically effective amount of a compound of Formula (I) or Formula (Ia), a pharmaceutically acceptable salt, solvate, polymorph, stereoisomer, tautomer, or N oxide, thereof:

wherein:

L is a bond, —CR 1 R 2 —, >C═O, or ═CR 1 —;

M is a bond, —O—, —S—, —S(O)—, >SO 2 , or —N(R 4 )—;

m is 0, 1, or 2;

n is 0, 1, 2, or 3;

provided that

when n is 0, then M is a bond;

p is 0, 1, 2, 3, or 4;

provided that

when p is 0, then L is —CR 1 R 2 — or ═CR 1 —;

X 1 and X 2 are independently selected from —OH, —OR 8 , or F;

Z is >C═O, >C═S, or >SO 2 ;

CycA is an optionally substituted 3-10 membered non-aromatic carbocycle, wherein an optional olefin functionality of the non-aromatic carbocycle is not directly attached to an oxygen, sulfur, or nitrogen substituent;

R a , R b , and R c are independently selected from the group consisting of hydrogen, fluoro, chloro, bromo, optionally substituted C 1 -C 6 alkyl, optionally substituted C 3 -C 6 cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, —OH, —OR 10 , —NR 4 R 5 , and —SR 10 ;

each R 1 and R 2 is independently selected from the group consisting of hydrogen, fluoro, chloro, bromo, optionally substituted C 1 -C 6 alkyl, optionally substituted C 3 -C 6 cycloalkyl, —OH, —OR 10 , —SR 10 , and —NR 4 R 5 ,

or R 1 and R 2 taken together form an oxo, oxime, or an optionally substituted carbocycle or optionally substituted heterocycle with the carbon to which they are attached;

R 3 is hydrogen or optionally substituted C 1 -C 6 alkyl;

each R d , R 4 , and R 5 is independently selected from the group consisting of hydrogen, —OH, —CN, optionally substituted C 1 -C 6 alkyl, optionally substituted alkoxyalkyl, optionally substituted hydroxyalkyl, optionally substituted aminoalkyl, optionally substituted cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted cycloalkylalkyl, optionally substituted heterocyclylalkyl, optionally substituted aralkyl, optionally substituted heteroaralkyl, (poly-ethylene-glycol)-ethyl, and an optionally substituted saccharide;

or R 4 and R 5 taken together form an optionally substituted heterocycle with the nitrogen to which they are attached;

each R 8 is independently selected from the group consisting of optionally substituted C 1 -C 6 alkyl, optionally substituted C 3 -C 6 cycloalkyl, and a pharmaceutically acceptable boronate ester group;

each R 10 is independently selected from the group consisting of optionally substituted C 1 -C 6 alkyl and optionally substituted C 3 -C 6 cycloalkyl;

and each Y is independently —NR 4 R 5 , —NR 4 C(═NR 5 )NR 4 R 5 , —C(═NR 4 )NR 4 R 5 , —N(R 4 )C(═NR 5 )R 6 , —(CR 6 R 7 ) v NR 4 R 5 , —(CR 6 R 7 ) v N(R 4 )C(═NR 5 )NR 4 R 5 , —NR 4 (CR 6 R 7 ) v NR 4 R 5 , —NR 4 (CR 6 R 7 ) v OR 10 , —(CR 6 R 7 ) v NR 4 (CR 6 R 7 ) v NR 4 R 5 , NR 5 C(═NR 5 )NR 4 (CR 6 R 7 ) v NR 4 R 5 , —NR 4 (CR 6 R 7 ) v N(R 4 )C(═NR 5 )NR 4 R 5 , —NR 5 C(O)CR 6 (NR 4 R 5 )(CR 6 R 7 ) v NR 4 R 5 , —(CR 6 R 7 ) v C(═NR 5 )NR 4 R 5 , —(CR 6 R 7 ) v N(R 4 )C(O)(CR 6 R 7 ) v NR 4 R 5 , —C(═NR 4 )NR 4 C(O)R 6 , —NR 4 (CR 6 R 7 ) v Heteroaryl, and —O(CR 6 R 7 ) v NR 4 R 5 ;

each R 6 and R 7 is independently selected from the group consisting of hydrogen, fluoro, chloro, bromo, optionally substituted C 1 -C 6 alkyl, optionally substituted alkoxyalkyl, optionally substituted hydroxyalkyl, optionally substituted C 3 -C 6 cycloalkyl, —OH, —OR 10 , —SR 10 , —NR 4 R 5 , —NR 4 C(O)R 5 , —NR 4 C(O)OR 5 , —NR 4 C(O)NR 5 , —C(O)OR 5 , —C(O)NR 4 R 5 , —C(N=R 5 )NR 4 R 5 —NR 4 SO 2 R 5 , optionally substituted heterocyclyl, optionally substituted aryl, and optionally substituted heteroaryl;

or R 6 and R 7 taken together form an oxo, oxime, or an optionally substituted carbocycle or an optionally substituted heterocycle with the carbon to which they are attached; and

each v is independently 1, 2, 3, or 4.

2. The method of claim 1 , wherein R a , R b , and R c are hydrogen.

3. The method of claim 1 , wherein R 3 is hydrogen.

4. The method of claim 1 , wherein X 1 and X 2 are —OH.

5. The method of claim 1 , wherein R d is hydrogen or C 1 -C 4 -alkyl.

6. The method of claim 1 , wherein Z is >C═O.

7. The method of claim 1 , wherein:

(A) L is —CR 1 R 2 — or ═CR 1 —;

M is —O—, —S—, —SO 2 —, or —N(R 4 )—;

m is 0 or 1; and

n is 1 or 2; or

(B) L is a bond, —CR 1 R 2 —, or ═CR 1 —;

M is a bond or —O—;

m is 0; and

n is 1 or 2; or

(C) L is a bond or >C═O;

M is a bond; and

m and n are 0; or

(D) L is a bond;

M is a bond; and

m or n are 1; or

(E) L is —CR 1 R 2 — or ═CR 1 —;

M is a bond; and

m and n are 0; or

(F) L is —CR 1 R 2 — or ═CR 1 —;

M is a bond; and

m or n are 1.

8. The method of claim 1 , wherein CycA is selected from the group consisting of cyclopropane, cyclobutane, cyclopentane, cyclohexane, cycloheptane, cyclooctane, cyclopentene, cyclohexene, cycloheptene, and cyclooctene, wherein the olefin functionality of the cyclopentene, cyclohexene, cycloheptene, and cyclooctene is not directly attached to an oxygen, sulfur, or nitrogen substituent.

9. The method of claim 8 , wherein CycA is cyclohexane.

10. The method of claim 1 , wherein p is 1 or 2.

11. The method of claim 1 , wherein R 4 and R 5 are independently hydrogen or optionally substituted C 1 -C 6 alkyl.

12. The method of claim 1 , wherein R 6 and R 7 are independently hydrogen, fluoro, or optionally substituted C 1 -C 6 alkyl.

13. The method of claim 1 , wherein the compound is selected from the group represented by the following structures:

or a pharmaceutically acceptable salt, solvate, polymorph, stereoisomer, tautomer, or N-oxide, thereof, wherein the compound is present in a closed, cyclic form according to Formula I and as shown in the structures above, an open, acyclic form according to Formula Ia, or mixtures thereof.

14. The method of claim 1 , further comprising administering a beta-lactam antibiotic.

15. The method of claim 14 , wherein the beta-lactam antibiotic is a penicillin, a cephalosporin, a carbapenem, a monobactam, a bridged monobactam, or a combination thereof.

16. The method of claim 1 , wherein the bacterial infection comprises a bacteria selected from Pseudomonas aeruginosa, Escherichia coli, Citrobacter freundii, Enterobacter cloacae, Enterobacter aerogenes, Klebsiella pneumoniae, Klebsiella oxytoca, Serratia marcescens, Proteus mirabilis, Proteus vulgaris, Providencia alcalifaciens, Providencia rettgeri, Providencia stuartii, Bacteroides fragilis, Bacteroides distasonis, Bacteroides 3452A homology group, Bacteroides vulgatus, Bacteroides ovalus, Bacteroides thetaiotaomicron, Bacteroides uniformis, Bacteroides eggerthii, Bacteroides splanchnicus, Clostridium difficile, Enterococcus faecalis, Enterococcus faecium, Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus saprophyticus, Staphylococcus intermedius, Staphylococcus hyicus subsp. hyicus, Staphylococcus haemolyticus, Staphylococcus hominis , and Staphylococcus saccharolyticus.

Assignments (2)
LICENSE Recorded Dec 9, 2024
From: VENATORX PHARMACEUTICALS INC
To: NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT
Reel/Frame 069545/0769 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 18, 2016
From: BURNS, CHRISTOPHER J.; DAIGLE, DENIS; LIU, BIN; MCGARRY, DANIEL; PEVEAR, DANIEL C.; TROUT, ROBERT E. LEE
To: VENATORX PHARMACEUTICALS, INC.
Reel/Frame 039389/0282 →
Continuity (4)
Continuation 14649527
Provisional Application 61734900 · Dec 7, 2012
Provisional Application 61783238 · Mar 14, 2013
Related Publication 20160326189A1 · Nov 10, 2016