IP Library Granted Patent US 8,409,819
Granted Patent B1
US 8,409,819 · App. 12/392,997 · Granted Apr 2, 2013

Methods to predict risk for celiac disease by detecting anti-flagellin antibody levels

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Quick Facts
Patent No.
US 8,409,819
App. No.
12/392,997
Granted
Apr 2, 2013
Kind
B1
Abstract

The present invention provides methods, assays, and kits for predicting or stratifying the risk of celiac disease (CD) based upon HLA-DQ genotype and/or anti-flagellin antibody levels. Such risk prediction or stratification can provide benefits to family members of CD patients, to a subset of patients who are being evaluated clinically for CD, and to researchers, who can utilize this strategy to establish inclusion criteria for participation in research studies investigating potential preventive interventions.

Claims (34)

1. A method for aiding in the prediction of whether an individual having a relative with celiac disease (CD) is at risk of developing CD, the method comprising:

(a) contacting a sample from the individual with a CBir1 flagellin antigen under conditions suitable to form a complex of the CBir1 flagellin antigen and an anti-CBir1 flagellin antibody, wherein the CBir1 flagellin antigen comprises the amino terminal conserved region (amino acid residues 1-147) of the sequence set forth in SEQ ID NO:1;

(b) contacting the complex with a labeled antibody to form a labeled complex;

(c) detecting the level of the labeled complex with a detection device, thereby determining a level of anti-CBir1 flagellin antibodies in the sample; and

(d) associating an elevated level of anti-CBir1 flagellin antibodies in the sample relative to a control with a high risk of developing CD,

thereby aiding in the prediction of whether an individual having a relative with CD is at risk of developing CD.

2. The method of claim 1 , wherein the sample is selected from the group consisting of whole blood, serum, plasma, urine, feces, and a tissue biopsy.

3. The method of claim 1 , wherein the presence of an elevated level of anti-CBir1 flagellin antibodies is associated with an about 9-fold increased risk of developing CD.

4. The method of claim 1 , wherein the control is negative for anti-endomysial antibodies.

5. The method of claim 1 , wherein the individual has an HLA-DQ2.5 or HLA-DQ8 genotype.

6. The method of claim 1 , wherein the level of anti-CBir1 flagellin antibodies is determined using an immunoassay or immunohistochemical assay.

7. The method of claim 1 , wherein the immunoassay is an enzyme-linked immunosorbent assay (ELISA).

8. The method of claim 1 , wherein the method further comprises sending the results from the prediction to a clinician.

9. A method for aiding in the prediction of whether an individual positive for anti-endomysial antibodies (EMA) is at risk of developing celiac disease (CD), the method comprising:

(a) contacting a sample from the individual with a CBir1 flagellin antigen under conditions suitable to form a complex of the CBir1 flagellin antigen and an anti-CBir1 flagellin antibody, wherein the CBir1 flagellin antigen comprises the amino terminal conserved region (amino acid residues 1-147) of the sequence set forth in SEQ ID NO:1;

(b) contacting the complex with a labeled antibody to form a labeled complex;

(c) detecting the level of the labeled complex with a detection device, thereby determining a level of anti-CBir1 flagellin antibodies in the sample; and

(d) associating an elevated level of anti-CBir1 flagellin antibodies in the sample relative to a control with a high risk of developing CD,

thereby aiding in the prediction of whether an individual positive for anti-EMA is at risk of developing CD.

10. The method of claim 9 , wherein the sample is selected from the group consisting of whole blood, serum, plasma, urine, feces, and a tissue biopsy.

11. The method of claim 9 , wherein the presence of an elevated level of anti-CBir1 flagellin antibodies is associated with an about 9-fold increased risk of developing CD.

12. The method of claim 9 , wherein the control is negative for anti-endomysial antibodies.

13. The method of claim 9 , wherein the individual has an HLA-DQ2.5 or HLA-DQ8 genotype.

14. The method of claim 9 , wherein the level of anti-CBir1 flagellin antibodies is determined using an immunoassay or immunohistochemical assay.

15. The method of claim 14 , wherein the immunoassay is an enzyme-linked immunosorbent assay (ELISA).

16. The method of claim 9 , wherein the method further comprises sending the results from the prediction to a clinician.

17. The method of claim 1 , wherein the CBir1 flagellin antigen further comprises a six histidine tag.

18. The method of claim 1 , wherein the labeled antibody comprises a reporter group.

19. The method of claim 18 , wherein the reporter group comprises a fluorescent group, a radioactive group, a luminescent group, an enzyme, biotin, or a dye.

20. The method of claim 1 , wherein the detection device comprises a plate reader, a spectrophotometer, or a fluorimeter.

21. The method of claim 9 , wherein the CBir1 flagellin antigen further comprises a six histidine tag.

22. The method of claim 9 , wherein the labeled antibody comprises a reporter group.

23. The method of claim 22 , wherein the reporter group comprises a fluorescent group, a radioactive group, a luminescent group, an enzyme, biotin, or a dye.

24. The method of claim 9 , wherein the detection device comprises a plate reader, a spectrophotometer, or a fluorimeter.

Assignments (10)
CORRECTIVE ASSIGNMENT TO CORRECT THE PATENT NUMBER 16062921 PREVIOUSLY RECORDED ON REEL 049391 FRAME 0756. ASSIGNOR(S) HEREBY CONFIRMS THE PATENT NUMBER SHOULD HAVE BEEN 16062912. Recorded Jul 3, 2020
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 054082/0165 →
CORRECTIVE ASSIGNMENT TO CORRECT THE PATENT NUMBER 16062921 PREVIOUSLY RECORDED ON REEL 049391 FRAME 0756. ASSIGNOR(S) HEREBY CONFIRMS THE PATENT NUMBER SHOULD HAVE BEEN 16062912. Recorded Jul 3, 2020
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 054082/0001 →
CHANGE OF NAME Recorded Oct 17, 2019
From: PRECISION IBD, INC.
To: PROMETHEUS BIOSCIENCES, INC.
Reel/Frame 050886/0942 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 26, 2019
From: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
To: PRECISION IBD, INC.
Reel/Frame 050166/0001 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ENGLISH TRANSLATION TO SHOW THE FULL AND CORRECT NEW NAME IN SECTION 51. PREVIOUSLY RECORDED AT REEL: 049391 FRAME: 0756. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER. Recorded Jun 13, 2019
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 049853/0398 →
MERGER Recorded Jun 6, 2019
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 049391/0756 →
RELEASE OF SECURITY INTEREST Recorded Dec 29, 2015
From: BANK OF AMERICA, N.A.
To: PROMETHEUS LABORATORIES INC.
Reel/Frame 037378/0464 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 19, 2012
From: PROMETHEUS LABORATORIES INC.
To: NESTEC S.A.
Reel/Frame 029504/0740 →
NOTICE OF GRANT OF SECURITY INTEREST IN PATENTS Recorded Dec 22, 2009
From: PROMETHEUS LABORATORIES INC.
To: BANK OF AMERICA, N.A., AS ADMINISTRATIVE AGENT
Reel/Frame 023679/0428 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 6, 2009
From: PIETZAK, MICHELLE; SCHOFIELD, TIM; MCGINNISS, MATTHEW J.; NAKAMURA, ROBERT M.; BARKEN, DERREN M.
To: PROMETHEUS LABORATORIES INC.
Reel/Frame 023064/0649 →