Method of diagnosing poor survival prognosis colon cancer using miR-106a
The present invention provides novel methods and compositions for the diagnosis and treatment of colon cancers. In particular, the present invention provides diagnostics and prognostics for colon (including colon adenocarcinoma) cancer patients, wherein the methods related to measuring miR levels can predict poor survival. The invention also provides methods of identifying inhibitors of tumorigenesis.
1. A method to identify a human who has poor survival prognosis colon adenocarcinoma, comprising:
a.) obtaining a colon adenocarcinoma cell containing test sample from a human;
b.) conducting at least one hybridization assay of the sample so as to obtain physical data regarding the expression level of miR-106a gene product in the sample; and
c.) identifying the human as one who has increased risk of poor prognosis colon adenocarcinoma if the physical data indicate that the expression level of miR-106a gene product is higher in the test sample than the expression level of miR-106a gene product of a control.
2. A method to identify a human who has poor survival prognosis colon adenocarcinoma, comprising:
a.) obtaining a colon adenocarcinoma cell containing test sample from a human;
b.) conducting at least one hybridization assay of the sample so as to obtain physical data to determine whether the expression level of miR-106a gene product in the sample is higher than expression level of miR-106a gene product in control sample from a healthy subject;
c.) comparing the expression level of miR-106a gene product in the sample with miR-106a expression in a control sample from a healthy subject; and
c.) identifying the human as one who has increased risk of poor prognosis colon adenocarcinoma if the physical data indicate that the expression level of miR-106a gene product is higher in the test sample than the expression level of miR-106a gene product of control.
3. The method of claim 2 , wherein the sample comprises one or more of tissue, blood, plasma, serum, urine, and feces.
4. The method of claim 2 , which further comprises communicating the data or risk to at least one human.
5. A method of diagnosing whether a subject has poor survival prognosis colon adenocarcinoma, comprising:
(1) reverse transcribing RNA from a test sample obtained from the subject to provide a set of target oligodeoxynucleotides wherein said subject has colon adenocarcinoma;
(2) hybridizing the target oligodeoxynucleotides to a microarray comprising miRNA-106a specific probe oligonucleotides to provide a hybridization profile for the test sample; and
(3) comparing the test sample hybridization profile to a hybridization profile generated from a control sample,
(4) diagnosing the subject as having poor survival prognosis colon adenocarcinoma if the hybridization profile of the test sample displays an increase in signal compared to the signal of the hybridization profile of the control sample.
6. The method of claim 1 , wherein the laboratory analysis is selected from the group consisting of: microarray; Northern blot analysis; RT-PCR; and in situ hybridization.
7. The method of claim 1 , wherein the sample comprises one or more of tissue, blood, plasma, serum, urine, and feces.
8. The method of claim 1 , which further comprises communicating the data or risk to at least one human.
9. The method of claim 1 , wherein the at least one miR-106a gene product includes isolated variants or biologically-active fragments thereof.
10. A method of claim 1 , which further comprises measuring the level of at least one additional miR gene product in the test sample, wherein the miR is selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
11. A method of claim 1 , which further comprises measuring the level of at least two or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
12. A method of claim 1 , which further comprises measuring the level of at least three or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
13. A method of claim 2 , which further comprises measuring the level of at least one additional miR gene product in the test sample, wherein the miR is selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
14. A method of claim 2 , which further comprises measuring the level of at least two or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
15. A method of claim 2 , which further comprises measuring the level of at least three or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
16. A method of claim 5 , which further comprises measuring the level of at least one additional miR gene product in the test sample, wherein the miR is selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
17. A method of claim 5 , which further comprises measuring the level of at least two or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.
18. A method of claim 5 , which further comprises measuring the level of at least three or more additional miR gene products in the test sample, wherein the miRs are selected from the group consisting of: miR-21; miR-181b; let-7g; miR-16b; miR-103-2; miR-203; miR-29a; and miR-10a.