IP Library Granted Patent US 9,465,027
Granted Patent B2
US 9,465,027 · App. 14/144,261 · Granted Oct 11, 2016

Assays for detecting neutralizing autoantibodies to biologic therapy

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Quick Facts
Patent No.
US 9,465,027
App. No.
14/144,261
Granted
Oct 11, 2016
Kind
B2
Abstract

The present invention provides assays for detecting and measuring the presence or level of neutralizing and non-neutralizing autoantibodies to biologics such as anti-TNFα drug therapeutics in a sample. The present invention is useful for monitoring the formation of neutralizing and/or non-neutralizing anti-drug antibodies over time while a subject is on biologic therapy. The present invention is also useful for predicting and/or determining the cross-reactivity of neutralizing anti-drug antibodies in a subject's sample with alternative biologic therapies. As such, the present invention provides information for guiding treatment decisions for those subjects receiving therapy with a biologic agent and improves the accuracy of optimizing therapy, reducing toxicity, and/or monitoring the efficacy of therapeutic treatment to biologic therapy.

Claims (28)

1. A method for measuring a percent of a neutralizing form of an autoantibody to an anti-TNFα drug in a sample, the method comprising:

(a) contacting the sample with a labeled anti-TNFα drug and a labeled TNFα to form:

(i) a first labeled complex of the labeled anti-TNFα drug and the autoantibody; and/or

(ii) a second labeled complex of the labeled anti-TNFα drug, the labeled TNFα, and the autoantibody;

(b) subjecting the first labeled complex and/or the second labeled complex to size exclusion chromatography to separate them from free labeled TNFα, free labeled anti-TNFα drug, and/or a complex of labeled anti-TNFα drug and labeled TNFα;

(c) measuring an area under the curve (AUC) of free labeled TNFα in the sample (Free labeled TNFα AUC of the sample) after size exclusion chromatography; and

(d) measuring the percent of a neutralizing form of the autoantibody by comparing the AUC of free labeled TNFα measured in step (c) to an AUC of free labeled TNFα in a first control sample (Free labeled TNFα AUC of the first control sample) and an AUC of free labeled TNFα in a second control sample (Free labeled TNFα AUC of the second control sample) using the equation:

((Free labeled TNFα AUC of the sample−Free labeled TNFα AUC of the first control sample)/Free labeled TNFα AUC of the second control sample)*100,

wherein the first control sample is a reference sample that is normal human serum to which labeled TNFα and labeled anti-TNFα drug has been added, and the second control sample is a reference sample that is normal human serum to which only labeled TNFα has been added.

2. The method of claim 1 , wherein the anti-TNFα drug is selected from the group consisting of infliximab, etanercept, adalimumab, certolizumab pegol, golimumab, and combinations thereof.

3. The method of claim 1 , wherein the autoantibody to the anti-TNFα drug is selected from the group consisting of a human anti-chimeric antibody (HACA), a human anti-humanized antibody (HAHA), a human anti-mouse antibody (HAMA), and combinations thereof.

4. The method of claim 1 , wherein the sample is positive for the neutralizing form of the autoantibody when the sample has greater than or equal to about 3.00% of the neutralizing form of the autoantibody.

5. The method of claim 1 , wherein the sample is serum.

6. The method of claim 1 , wherein the sample is obtained from a subject receiving therapy with the anti-TNFα drug.

7. The method of claim 1 , wherein the labeled anti-TNFα drug and the labeled TNFα comprise different fluorophores or fluorescent dyes.

8. A method for determining whether a neutralizing form of an autoantibody to a first anti-TNFα drug is cross-reactive with a second anti-TNFα drug, the method comprising:

(a) measuring the percent of a neutralizing form of the autoantibody in a sample by performing the method of claim 4 to determine whether the sample is positive or negative for the neutralizing form of the autoantibody; and

if the sample is positive for the neutralizing form of the autoantibody, then:

(b) contacting the sample with a labeled second anti-TNFα drug to form a labeled complex of the labeled second anti-TNFα drug and the neutralizing form of the autoantibody;

(c) subjecting the labeled complex to size exclusion chromatography to separate the labeled complex; and

(d) detecting the labeled complex, thereby determining whether a neutralizing form of an autoantibody to a first anti-TNFα drug is cross-reactive with a second anti-TNFα drug.

9. The method of claim 8 , wherein the first and second anti-TNFα drugs are independently selected from the group consisting of infliximab, etanercept, adalimumab, certolizumab pegol, golimumab, and combinations thereof.

10. The method of claim 8 , wherein the autoantibody to the first anti-TNFα drug is selected from the group consisting of a human anti-chimeric antibody (HACA), a human anti-humanized antibody (HAHA), a human anti-mouse antibody (HAMA), and combinations thereof.

11. The method of claim 8 , wherein the presence of the labeled complex indicates that the neutralizing autoantibody against the first anti-TNFα drug is cross-reactive with the second anti-TNFα drug.

12. The method of claim 8 , wherein the absence of the labeled complex indicates that the neutralizing autoantibody against the first anti-TNFα drug is not cross-reactive with the second anti-TNFα drug.

13. The method of claim 8 , wherein the sample is serum.

14. The method of claim 8 , wherein the sample is obtained from a subject receiving therapy with the anti-TNFα drug.

15. The method of claim 8 , wherein the labeled second anti-TNFα drug comprises a fluorophore or fluorescent dye.

Assignments (7)
CORRECTIVE ASSIGNMENT TO CORRECT THE PATENT NUMBER 16062921 PREVIOUSLY RECORDED ON REEL 049391 FRAME 0756. ASSIGNOR(S) HEREBY CONFIRMS THE PATENT NUMBER SHOULD HAVE BEEN 16062912. Recorded Jul 3, 2020
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 054082/0165 →
CORRECTIVE ASSIGNMENT TO CORRECT THE PATENT NUMBER 16062921 PREVIOUSLY RECORDED ON REEL 049391 FRAME 0756. ASSIGNOR(S) HEREBY CONFIRMS THE PATENT NUMBER SHOULD HAVE BEEN 16062912. Recorded Jul 3, 2020
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 054082/0001 →
CHANGE OF NAME Recorded Oct 17, 2019
From: PRECISION IBD, INC.
To: PROMETHEUS BIOSCIENCES, INC.
Reel/Frame 050886/0942 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 26, 2019
From: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
To: PRECISION IBD, INC.
Reel/Frame 050166/0001 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ENGLISH TRANSLATION TO SHOW THE FULL AND CORRECT NEW NAME IN SECTION 51. PREVIOUSLY RECORDED AT REEL: 049391 FRAME: 0756. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER. Recorded Jun 13, 2019
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 049853/0398 →
MERGER Recorded Jun 6, 2019
From: NESTEC S.A.
To: SOCIÉTÉ DES PRODUITS NESTLÉ S.A.
Reel/Frame 049391/0756 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 27, 2015
From: HAUENSTEIN, SCOTT; OHRMUND, LINDA; SINGH, SHARAT; WANG, SHUI LONG
To: NESTEC S.A.
Reel/Frame 034819/0217 →