IP Library Granted Patent US 10,035,824
Granted Patent B2
US 10,035,824 · App. 15/831,087 · Granted Jul 31, 2018

Oral peptide inhibitors of interleukin-23 receptor and their use to treat inflammatory bowel diseases

Inventors: Ashok Bhandari (Pleasanton, CA); Gregory Bourne (Jindalee, AU); Xiaoli Cheng (Mountain View, CA); Brian Troy Frederick (Ben Lomond, CA); Jie Zhang (Salisbury, AU); Dinesh V. Patel (Fremont, CA); David Liu (Newark, CA)
Assignee: Protagonist Therapeutics, Inc.
C07K7/08C07K7/02C07K7/50C07K7/64A61K38/00G01N2800/065
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Quick Facts
Patent No.
US 10,035,824
App. No.
15/831,087
Granted
Jul 31, 2018
Kind
B2
Abstract

Peptide inhibitors of the interleukin-23 receptor, and related compositions and methods of using these peptide inhibitors to treat or prevent a variety of diseases and disorders, including inflammatory bowel disease, are disclosed.

Claims (51)

1. A peptide inhibitor of an interleukin-23 receptor, or a pharmaceutically acceptable salt thereof, comprising an amino acid sequence consisting of Formula (Xa):

X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20   (Xa),

or a pharmaceutically acceptable salt thereof,

wherein

X1 is any amino acid or absent;

X2 is any amino acid or absent;

X3 is any amino acid or absent;

X4 is Abu;

X5 is Gln;

X6 is Thr;

X7 is Trp;

X8 is Gln;

X9 is Cys;

X10 is Phe, Tyr, a Phe analog, or a Tyr analog;

X11 is 1-Nal, 2-Nal, Phe(3,4-dimethoxy), or Phe(3,4-Cl 2 );

X12 is α-Me-Lys, α-Me-Leu, α-Me-Ser, α-Me-Val, Achc, Acvc, Acpc, Acbc, Aib, or 4-amino-4-carboxy-tetrahydropyran;

X13 is any amino acid;

X14 is any amino acid;

X15 is any amino acid,

X16 is any amino acid or absent;

X17 is any amino acid or absent;

X18 is any amino acid or absent;

X19 is any amino acid or absent; and

X20 is any amino acid or absent,

wherein the peptide inhibitor is cyclized via a thioether bond between X4 and X9, and

wherein 1-Nal is L-1-napthylalanine, 2-Nal is L-2-napthylalanine, Abu is 2-aminobutyric acid, α-Me-Lys is alpha-methyl-L-Lysine, α-Me-Leu is alpha-methyl-L-Leucine, α-Me-Ser is alpha-methyl-L-Serine, α-Me-Val is alpha-methyl-L-Valine, Ache is 1-aminocyclohexanecarboxylic acid, Acvc is 1-aminocyclopentanecarboxylic acid, Acpc is 1-aminocyclopropylcarboxylic acid, Acbc is 1-aminocyclobutanecarboxylic acid, and Aib is 2-aminoisobutyric acid.

2. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 , wherein the peptide inhibitor comprises an N-terminal Ac group and a C-terminal NH 2 group.

3. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 , wherein X3 is selected from Glu, (D)Glu, Arg, (D)Arg, Phe, (D)Phe, 2-Nal, Thr, Leu, or (D)Gln.

4. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 , wherein X10 is Phe(4-OMe), Phe(4-CONH 2 ), or Phe[4-(2-aminoethoxy)].

5. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 , wherein X11 is 2-Nal.

6. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQCY-[2-Nal]-[α-Me-Lys]-ENG-NH 2 (SEQ ID NO:704) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

7. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe(4-OMe)]-[2-Nal]-[α-Me-Lys]-ENG-NH 2 (SEQ ID NO:702) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

8. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]-W-[α-Me-Lys]-ENG-NH 2 (SEQ ID NO:782) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

9. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Lys]-[Lys(isovaleric acid)]-NG-NH 2 (SEQ ID NO:861) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

10. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[Aib]-QNG-NH 2 (SEQ ID NO:877) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

11. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[Aib]-[Lys(Ac)]-NA-NH 2 (SEQ ID NO:880) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

12. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-(acetyl-aminoethoxy)]]-[2-Nal]-[α-Me-Lys(Ac)]-[Lys(Ac)]-NG-NH 2 (SEQ ID NO:900) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

13. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Lys]-ENQ-NH 2 (SEQ ID NO:911) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

14. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Lys]-ENN-NH 2 (SEQ ID NO:912) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

15. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-MeVal]-[Lys(Ac)]-NG-NH 2 (SEQ ID NO:915) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

16. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Leu)-[Cit]-NN-NH 2 (SEQ ID NO:954) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

17. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac—[(D)Phe]-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Lys]-ENN-NH 2 (SEQ ID NO:970) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

18. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-T-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[α-Me-Lys]-ENN-NH 2 (SEQ ID NO:972) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

19. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[acbc]-ENN-NH 2 (SEQ ID NO:976) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

20. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[acpc]-ENN-NH 2 (SEQ ID NO: 1043) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

21. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[achc]-ENN-NH 2 (SEQ ID NO: 1047) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

22. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[4-amino-4-carboxy-tetrahydropyran]-ENN-NH 2 (SEQ ID NO:980) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

23. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[alpha-methyl-L-Leucine]-QN-[betaAla]-NH 2 (SEQ ID NO:984) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

24. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac-(D)Phe-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[4-amino-4-carboxy-tetrahydropyran]-ENN-NH 2 (SEQ ID NO:992) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

25. The peptide inhibitor or pharmaceutically acceptable salt thereof of claim 3 , wherein the peptide inhibitor or pharmaceutically acceptable salt thereof is: Ac—[(D)Arg]-[Abu]-QTWQC-[Phe[4-(2-aminoethoxy)]]-[2-Nal]-[4-amino-4-carboxy-tetrahydropyran]-ENN-NH 2 (SEQ ID NO:993) or a pharmaceutically acceptable salt thereof, wherein the peptide inhibitor is cyclized via a thioether bond between Abu and C.

26. A pharmaceutical composition comprising the peptide inhibitor or pharmaceutically acceptable salt thereof of claim 1 .

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 5, 2017
From: BOURNE, GREGORY THOMAS; BHANDARI, ASHOK; CHENG, XIAOLI; FREDERICK, BRIAN TROY; ZHANG, JIE; PATEL, DINESH; LIU, DAVID
To: PROTAGONIST THERAPEUTICS, INC.
Reel/Frame 044297/0678 →
Continuity (6)
Continuation 15442229 · Feb 24, 2017
Division 14800627 · Jul 15, 2015
Provisional Application 62025899 · Jul 17, 2014
Provisional Application 62119685 · Feb 23, 2015
Provisional Application 62119688 · Feb 23, 2015
Related Publication 20180079782A1 · Mar 22, 2018
Cited By (4)
US 12,478,617 US 12,552,836 US 12,655,185 US 12,673,974