Bromodomain inhibitors
The present invention relates to substituted heterocyclic derivative compounds, compositions comprising said compounds, and the use of said compounds and compositions for epigenetic regulation by inhibition of bromodomain-mediated recognition of acetyl lysine regions of proteins, such as histones. Said compositions and methods are useful for the treatment of cancer and neoplastic disease.
1. A compound of Formula I, or a pharmaceutically acceptable salt thereof,
wherein,
X 2 is C—R 12 , in which R 12 is hydrogen, halogen, alkyl, or alkoxy;
X 5 is C—R 15 , in which R 15 is hydrogen, halogen, —CN, alkyl or alkoxy;
X 6 is C—R 16 , in which R 16 is hydrogen, halogen, or —W-X, wherein W is a bond, —O—, —S—, or —NH—, and X is alkyl, alkynyl, aryl, aralkyl, cycloalkyl, cycloalkylalkyl, cycloalkylalkynyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
Ring A is selected from the group consisting of:
wherein:
R 1 is hydrogen, alkyl, alkylsulfonyl, alkylsulfinyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
R 2 is alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
each R 3 is independently hydrogen, halogen, alkyl, alkoxy, alkoxyalkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
G is:
2. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein G is:
3. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein G is:
4. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein G is:
5. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein ring A is selected to provide one of:
6. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein ring A is selected to provide one of:
7. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein:
R 16 is hydrogen or —W—X, wherein W is —O—, —S— or —NH— and X is alkyl, alkynyl, aryl, aralkyl, cycloalkyl, cycloalkylalkyl, cycloalkylalkynyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
R 1 is hydrogen, alkyl, alkylsulfonyl, alkylsulfinyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
R 2 is alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl.
8. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein:
R 16 is —W—X, wherein W is —O— and X is alkyl aryl, cycloalkyl, or cycloalkylalkyl;
R 1 is hydrogen or alkyl; and
R 2 is alkyl.
9. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 16 is:
10. The compound of claim 1 , or a pharmaceutically acceptable salt thereof, wherein R 16 is:
11. A compound selected from one of the following:
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(3-fluorophenyl)methyl]-2-methylbenzimidazol-4-yl]ethanesulfonamide;
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(4-fluorophenyl)methyl]indazol-4-yl]ethanesulfonamide;
N-[2-cyclopropyl-7-(2-methyl-1-oxoisoquinolin-4-yl)-1,3-benzoxazol-5-yl]ethanesulfonamide;
4-[5-(cyclopropylmethoxy)-2-ethyl-1,1-dioxo-3H-1,2-benzothiazol-6-yl]-2-methylisoquinolin-1-one;
4-[5-(cyclopropylmethoxy)-1-methylsulfonyl-2,3-dihydroindol-6-yl]-2-methylisoquinolin-1-one;
4-[5-(cyclopropylmethoxy)-1-ethylsulfonyl-2,3-dihydroindol-6-yl]-2-methylisoquinolin-1-one;
N-[1-benzyl-6-(2-methyl-1-oxoisoquinolin-4-yl)indol-4-yl]methanesulfonamide;
N-[1-benzyl-6-(1,5-dimethyl-6-oxopyridin-3-yl)indol-4-yl]methanesulfonamide;
N-[1-benzyl-6-(1,5-dimethyl-6-oxopyridin-3-yl)-2,3-dihydroindol-4-yl]methanesulfonamide;
N-[1-benzyl-6-(2-methyl-1-oxoisoquinolin-4-yl)-2,3-dihydroindol-4-yl]methanesulfonamide;
N-[1-benzyl-6-(1,5-dimethyl-6-oxopyridin-3-yl)benzotriazol-4-yl]ethanesulfonamide N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(4-fluorophenyl)methyl]benzotriazol-4-yl]ethanesulfonamide;
4-[6-(cyclopropylmethoxy)-1-methyl-3-methyl sulfonylindazol-5-yl]-2-methylisoquinolin-1-one;
4-[6-(cyclopropylmethoxy)-3-ethyl sulfonyl-1 methylindazol-5-yl]-2-methylisoquinolin-1-one;
N-[1-benzyl-6-(1,5-dimethyl-6-oxopyridin-3-yl)benzimidazol-4-yl]methanesulfonamide
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(3-fluorophenyl)methyl]benzimidazol-4-yl]methanesulfonamide;
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(3-fluorophenyl)methyl]benzimidazol-4-yl]ethanesulfonamide;
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(3-fluorophenyl)methyl]-2-methylbenzimidazol-4-yl]methanesulfonamide;
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-1-[(4-fluorophenyl)methyl]-2-methylbenzimidazol-4-yl]methanesulfonamide;
N-[1-[(2,4-difluorophenyl)methyl]-6-(1,5-dimethyl-6-oxopyridin-3-yl)benzimidazol-4-yl]ethanesulfonamide;
N-[1-benzyl-6-(1,5-dimethyl-6-oxopyridin-3-yl)indazol-4-yl]ethanesulfonamide;
N-[6-(1,5-dimethyl-6-oxopyridin-3-yl)-2-methyl-1-(1-phenylethyl)benzimidazol-4-yl]methanesulfonamide;
4-[7-(cyclopropylmethoxy)-4-ethylsulfonyl-2,3-dihydro-1,4-benzoxazin-6-yl]-2-methylisoquinolin-1-one;
N-[1-(cyclopropylmethyl)-6-(1,5-dimethyl-6-oxopyridin-3-yl)-2-ethoxybenzimidazol-4-yl]methanesulfonamide;
N-[1-(cyclopropylmethyl)-6-(1,5-dimethyl-6-oxopyridin-3-yl)-2-methoxybenzimidazol-4-yl]methanesulfonamide;
N-[1-(cyclopropylmethyl)-6-(1,5-dimethyl-6-oxopyridin-3-yl)-2-(trifluoromethyl)benzimidazol-4-yl]methanesulfonamide;
or a pharmaceutical salt of any of these compounds.
12. A pharmaceutical composition comprising the compound of claim 1 or 11 .
13. An oral dosage form comprising the pharmaceutical composition of claim 12 .
14. A medicament comprising the pharmaceutical composition of claim 12 for use in the treatment of cancer or other neoplastic disease.
15. A method of modulating the epigenetic status of a cell comprising contacting the cell with the compound of claim 1 .
16. A method for inhibiting the activity of a bromodomain-containing protein in a biological sample comprising contacting the biological sample with the compound of claim 1 .
17. A method for treating cancer or neoplastic disease in a subject in need of such treatment comprising administering to the subject a therapeutically effective amount of a compound of claim 1 .
18. A compound of Formula II, or a pharmaceutically acceptable salt thereof,
wherein,
X 2 is C—R 12 , wherein R 12 is hydrogen, halogen, alkyl, or alkoxy;
X 3 is C—R 13 , wherein R 13 is —Y—Z, in which
Y is a bond, —CH 2 —, or —CH(C 1 -C 4 alkyl)-;
Z is —SO 2 R b , —N(R a )SO 2 R b , —SO 2 N(R a ) 2 , —N(R a )SO 2 N(R a ) 2 , —CON(R a ) 2 , —N(R a )CO 2 R a , —N(R a )CON(R a ) 2 , —N(R a )COR a , —OC(O)N(R a ) 2 , —OSO 2 N(R a ) 2 , or —N(R a )SO 3 R b ;
each R a is independently selected from hydrogen, alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
R b is selected from alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
X 6 is C—R 16 , wherein R 16 is hydrogen, halogen, or —W—X, wherein W is a bond, —O—, —S—, or —NH—, and X is alkyl, alkynyl, aryl, aralkyl, cycloalkyl, cycloalkylalkyl, cycloalkylalkynyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
Ring B is selected to provide one of:
and wherein:
R 1 is hydrogen, alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
each R 3 is independently hydrogen, halogen, alkyl, alkylsulfonyl, alkylsulfinyl, alkoxy, alkoxyalkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
G is:
19. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein G is:
20. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein G is:
21. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein G is:
22. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein ring B is selected to provide one of the following:
23. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein ring B is selected to provide one of the following:
24. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein:
R 13 is —Y—Z, in which Y is a bond or —CH 2 —, Z is —SO 2 R b , —N(R a )SO 2 R b , or —SO 2 N(R a ) 2 , each R a is independently hydrogen, alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl, and R b is alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl;
R 1 is hydrogen, alkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl; and
R 3 is hydrogen, halogen, alkyl, alkylsulfonyl, alkylsulfinyl, alkoxy, alkoxyalkyl, cycloalkyl, cycloalkylalkyl, aryl, aralkyl, heterocyclyl, heterocyclylalkyl, heteroaryl, or heteroarylalkyl.
25. The compound of claim 18 , or a pharmaceutically acceptable salt thereof, wherein:
R 13 is —Y—Z, in which Y is a bond or —CH 2 —, Z is —SO 2 R b or —N(R a )SO 2 R b , each R a is independently hydrogen or alkyl, and R b is alkyl;
R 1 is alkyl, cycloalkylalkyl, or aralkyl; and
R 3 is hydrogen, halogen, alkyl, or alkoxy.
26. A pharmaceutical composition comprising the compound of claim 18 .
27. An oral dosage form comprising the pharmaceutical composition of claim 26 .
28. A medicament comprising the pharmaceutical composition of claim 26 for use in the treatment of cancer or other neoplastic disease.
29. A method of modulating the epigenetic status of a cell comprising contacting the cell with the compound of claim 18 .
30. A method for inhibiting the activity of a bromodomain-containing protein in a biological sample comprising contacting the biological sample with the compound of claim 18 .
31. A method for treating cancer or neoplastic disease in a subject in need of such treatment comprising administering to the subject a therapeutically effective amount of a compound of claim 18 .