Circular RNA for translation in eukaryotic cells
Methods and constructs for engineering circular RNA are disclosed. In some embodiments, the methods and constructs comprise a vector for making circular RNA, the vector comprising the following elements operably connected to each other and arranged in the following sequence: a.) a 5′ homology arm, b.) a 3′ group I intron fragment containing a 3′ splice site dinucleotide, c.) optionally, a 5′ spacer sequence, d.) a protein coding or noncoding region, e.) optionally, a 3′ spacer sequence, f.) a 5′ Group I intron fragment containing a 5′ splice site dinucleotide, and g.) a 3′ homology arm, the vector allowing production of a circular RNA that is translatable or biologically active inside eukaryotic cells. Methods for purifying the circular RNA produced by the vector and the use of nucleoside modifications in circular RNA produced by the vector are also disclosed.
1. A vector for making circular RNA, said vector comprising the following elements operably connected to each other and arranged in the following sequence:
a) a 5′ homology arm,
b) a 3′ Group I self-splicing intron fragment containing a 3′ splice site dinucleotide,
c) a 5′ spacer sequence,
d) an internal ribosome entry site (IRES),
e) a protein coding region,
f) a 3′ spacer sequence,
g) a 5′ Group I self-splicing intron fragment containing a 5′ splice site dinucleotide, and
h) a 3′ homology arm,
said vector allowing production of a circular RNA that is translatable or biologically active inside eukaryotic cells.
2. The vector of claim 1 , wherein the protein coding region encodes a therapeutic protein, a chimeric antigen receptor, an antibody or a bispecific antibody.
3. A composition comprising:
a) the vector for making circular RNA of claim 1 , and
b) a delivery vehicle for delivering the vector to a cell, said delivery vehicle comprising a nanocarrier selected from the group consisting of a lipid, a polymer and a lipo-polymeric hybrid.
4. The composition of claim 3 , which is formulated for intravenous delivery.
5. A circular RNA produced by the vector of claim 1 , wherein the circular RNA has a size of at least 500 nucleotides.
6. A eukaryotic cell comprising the circular RNA of claim 5 .
7. A cell population comprising the circular RNA of claim 5 .
8. The circular RNA of claim 5 , wherein the circular RNA comprises in the following order, a portion of a 3′ Group I self-splicing intron fragment, an Internal Ribosome Entry Site (IRES), a protein coding region, and a portion of a 5′ Group I self-splicing intron fragment.
9. The circular RNA of claim 8 , wherein the protein coding region encodes a chimeric antigen receptor.
10. A composition comprising an effective amount of the circular RNA of claim 5 and a pharmaceutically acceptable carrier.
11. The composition of claim 10 , wherein the composition is a nanoparticle formulation.
12. A composition comprising:
a) an effective amount of the circular RNA of claim 5 , and
b) a delivery vehicle for delivering the circular RNA to a cell, said delivery vehicle comprising a nanocarrier selected from the group consisting of a lipid, a polymer and a lipo-polymeric hybrid.
13. A composition comprising a circular RNA-expressing cell in combination with one or more pharmaceutically or physiologically acceptable carriers, excipients or diluents, wherein the circular RNA is the circular RNA of claim 5 .
14. The composition of claim 13 , comprising a plurality of circular RNA-expressing cells.
15. The circular RNA of claim 5 which is at least 1 kb.
16. A vector for making circular RNA, said vector comprising the following elements operably connected to each other and arranged in the following sequence:
a) a 5′ homology arm,
b) a 3′ Group I self-splicing intron fragment containing a 3′ splice site dinucleotide,
c) a 5′ spacer sequence,
d) an internal ribosome entry site (IRES),
e) a protein coding region encoding a chimeric antigen receptor,
f) a 3′ spacer sequence,
g) a 5′ Group I self-splicing intron fragment containing a 5′ splice site dinucleotide, and
h) a 3′ homology arm,
said vector allowing production of a circular RNA that is translatable or biologically active inside eukaryotic cells.
17. A composition comprising:
a) the vector for making circular RNA of claim 16 , and
b) a delivery vehicle for delivering the vector to a cell, said delivery vehicle comprising a nanocarrier selected from the group consisting of a lipid, a polymer and a lipo-polymeric hybrid.
18. A circular RNA produced by the vector of claim 16 , wherein the circular RNA has a size of at least 500 nucleotides.
19. The circular RNA of claim 18 , wherein the circular RNA comprises in the following order, a portion of a 3′ Group I self-splicing intron fragment, an Internal Ribosome Entry Site (IRES), a protein coding region encoding a chimeric antigen receptor, and a portion of a 5′ Group I self-splicing intron fragment.
20. A composition comprising:
a) an effective amount of the circular RNA of claim 18 , and
b) a delivery vehicle for delivering the circular RNA to a cell, said delivery vehicle comprising a nanocarrier selected from the group consisting of a lipid, a polymer and a lipo-polymeric hybrid.
21. The composition of claim 20 , wherein the composition is a nanoparticle formulation.