US 5219727A
· Wang et al.
· 1993
[cited by applicant]
US 5538871A
· Nuovo et al.
· 1996
[cited by applicant]
US 5547859A
· Goodman
· 1996
[cited by applicant]
US 5556773A
· Yourno
· 1996
[cited by applicant]
US 5582981A
· Toole et al.
· 1996
[cited by applicant]
US 5639606A
· Willey
· 1997
[cited by applicant]
US 5639611A
· Wallace et al.
· 1997
[cited by applicant]
US 5811250A
· Solum
· 1998
[cited by applicant]
US 5840867A
· Toole et al.
· 1998
[cited by applicant]
US 6004755A
· Wang
· 1999
[cited by applicant]
US 6204375B1
· Lader
· 2001
[cited by applicant]
US 6329179B1
· Kopreski
· 2001
[cited by applicant]
US 6525154B1
· Shea et al.
· 2003
[cited by applicant]
US 6607898B1
· Kopreski et al.
· 2003
[cited by applicant]
US 6759217B2
· Kopreski
· 2004
[cited by applicant]
US 6794135B1
· Kopreski et al.
· 2004
[cited by applicant]
US 6812023B1
· Lamparski et al.
· 2004
[cited by applicant]
US 6893837B2
· Slamon et al.
· 2005
[cited by applicant]
US 6899863B1
· Dhellin et al.
· 2005
[cited by applicant]
US 6913879B1
· Schena
· 2005
[cited by applicant]
US 6916634B2
· Kopreski
· 2005
[cited by applicant]
US 6939671B2
· Kopreski
· 2005
[cited by applicant]
US 6994960B1
· Foote et al.
· 2006
[cited by applicant]
US 7074563B2
· Köster
· 2006
[cited by applicant]
US 7186512B2
· Martienssen et al.
· 2007
[cited by applicant]
US 7198893B1
· Köster et al.
· 2007
[cited by applicant]
US 7198923B1
· Abrignani et al.
· 2007
[cited by applicant]
US 7332533B2
· Kim
· 2008
[cited by applicant]
US 7332552B2
· Benicewicz
· 2008
[cited by applicant]
US 7332553B2
· Sellergren et al.
· 2008
[cited by applicant]
US 7364848B2
· Van Beuningen et al.
· 2008
[cited by applicant]
US 7378245B2
· Liu
· 2008
[cited by applicant]
US 7384589B2
· Hart et al.
· 2008
[cited by applicant]
US 7671010B2
· Arap et al.
· 2010
[cited by applicant]
US 7691383B2
· Chakrabarty et al.
· 2010
[cited by applicant]
US 7776523B2
· Garcia
· 2010
[cited by applicant]
US 7807183B2
· Hong et al.
· 2010
[cited by applicant]
US 20030077808A1
· Rosen
· 2003
[cited by applicant]
US 20050250100A1
· Hayashizaki
· 2005
[cited by applicant]
US 20060099605A1
· Hall, Jr.
· 2006
[cited by examiner]
US 20060116321A1
· Robbins et al.
· 2006
[cited by applicant]
US 20060160087A1
· McGrath et al.
· 2006
[cited by applicant]
US 20060223072A1
· Boyes et al.
· 2006
[cited by applicant]
US 20070105105A1
· Clelland
· 2007
[cited by applicant]
US 20080003575A1
· Michalik et al.
· 2008
[cited by applicant]
US 20080268429A1
· Pietrzkowski et al.
· 2008
[cited by applicant]
US 20080287669A1
· Braman et al.
· 2008
[cited by applicant]
US 20090227533A1
· Bader
· 2009
[cited by applicant]
US 20100008978A1
· Drummond et al.
· 2010
[cited by applicant]
US 20100196426A1
· Skog et al.
· 2010
[cited by applicant]
US 20100255514A1
· Rak
· 2010
[cited by applicant]
US 20110003704A1
· Skog et al.
· 2011
[cited by applicant]
US 20110053157A1
· Skog et al.
· 2011
[cited by applicant]
US 20110081651A1
· Hillan
· 2011
[cited by applicant]
US 20110195426A1
· Russo et al.
· 2011
[cited by applicant]
US 20120142001A1
· Skog et al.
· 2012
[cited by applicant]
US 20120238467A1
· Taylor
· 2012
[cited by applicant]
US 20130040833A1
· Noerholm et al.
· 2013
[cited by applicant]
US 20130131194A1
· Skog et al.
· 2013
[cited by applicant]
US 20130295574A1
· Skog et al.
· 2013
[cited by applicant]
US 20140147839A1
· Chen et al.
· 2014
[cited by applicant]
US 20140194319A1
· Skog et al.
· 2014
[cited by applicant]
US 20140194613A1
· Skog et al.
· 2014
[cited by applicant]
US 20160348095A1
· Russo et al.
· 2016
[cited by applicant]
US 20160362678A1
· Skog et al.
· 2016
[cited by applicant]
US 20170114389A1
· Russo et al.
· 2017
[cited by applicant]
US 20170314075A1
· Skog et al.
· 2017
[cited by applicant]
US 20180051335A9
· Skog et al.
· 2018
[cited by applicant]
CA 2453198A1
· 2005
[cited by applicant]
CA 2676113A1
· 2009
[cited by applicant]
CA 2699646A1
· 2009
[cited by applicant]
CN 101085349A
· 2007
[cited by applicant]
EP 2202522A1
· 2010
[cited by applicant]
JP H08509806A
· 1996
[cited by applicant]
JP 2002521071A
· 2002
[cited by applicant]
JP 2002535665A
· 2002
[cited by applicant]
JP 2003514523A
· 2003
[cited by applicant]
JP 2003531864A
· 2003
[cited by applicant]
JP 2008501336A
· 2008
[cited by applicant]
JP 2008035779A
· 2008
[cited by applicant]
JP 2008509806A
· 2008
[cited by applicant]
JP 2008541699A
· 2008
[cited by applicant]
JP 2010534480A
· 2010
[cited by applicant]
JP 2011510663A
· 2011
[cited by applicant]
JP 2012533308A
· 2012
[cited by applicant]
JP 5156829B2
· 2013
[cited by applicant]
WO WO1994011018A1
· 1994
[cited by applicant]
WO WO1994022018A1
· 1994
[cited by applicant]
WO WO2000004194A1
· 2000
[cited by applicant]
WO WO2000006780A1
· 2000
[cited by applicant]
WO WO2001036601A1
· 2001
[cited by applicant]
WO WO2001082958A2
· 2001
[cited by applicant]
WO WO2002099064A2
· 2002
[cited by applicant]
WO WO2003023065A1
· 2003
[cited by applicant]
WO WO2003050290A2
· 2003
[cited by applicant]
WO WO2003076603A2
· 2003
[cited by applicant]
WO WO2005000098A3
· 2005
[cited by applicant]
WO WO2005081867A3
· 2005
[cited by applicant]
WO WO2005121359A1
· 2005
[cited by applicant]
WO WO2005121369A2
· 2005
[cited by applicant]
WO WO2006020707A2
· 2006
[cited by applicant]
WO WO2006048291A2
· 2006
[cited by applicant]
WO WO2006113590A2
· 2006
[cited by applicant]
WO WO2006119439A2
· 2006
[cited by applicant]
WO WO2007015174A2
· 2007
[cited by applicant]
WO WO2007103572A2
· 2007
[cited by applicant]
WO WO2007126386A1
· 2007
[cited by applicant]
WO WO2007127848A1
· 2007
[cited by applicant]
WO WO2008084331A2
· 2008
[cited by applicant]
WO WO2008104543A2
· 2008
[cited by applicant]
WO WO2009015357A1
· 2009
[cited by applicant]
WO WO2009021322A1
· 2009
[cited by applicant]
WO WO2009030029A1
· 2009
[cited by applicant]
WO WO2009036236A1
· 2009
[cited by applicant]
WO WO2009092386A2
· 2009
[cited by applicant]
WO WO2009100029A1
· 2009
[cited by applicant]
WO WO2009155505A2
· 2009
[cited by applicant]
WO WO2010028099A1
· 2010
[cited by applicant]
WO WO2010056337A2
· 2010
[cited by applicant]
WO WO2010065968A1
· 2010
[cited by applicant]
WO WO2010099184A1
· 2010
[cited by applicant]
WO WO2010141955A2
· 2010
[cited by applicant]
WO WO2011000551A1
· 2011
[cited by applicant]
WO WO2011009104A1
· 2011
[cited by examiner]
WO WO2011031877A1
· 2011
[cited by applicant]
WO WO2011031892A1
· 2011
[cited by applicant]
WO WO2011088226A2
· 2011
[cited by applicant]
WO WO2011127219A1
· 2011
[cited by applicant]
WO WO2012031008A2
· 2012
[cited by applicant]
WO WO2012051622A2
· 2012
[cited by applicant]
WO WO2012064993A1
· 2012
[cited by applicant]
Abravaya, et al., “Detection of point mutations with a modified ligase chain reaction (Gap-LCR).” Nucleic Acids Research (1995); 23(4): 675-682.
[cited by applicant]
Affymetriix, “GeneChip Human Genome U133 Set”, Apr. 20, 2001, 2 pages, URL: http://www.affymetrix.com/products/arrays/specific/hgu_133_.asp.
[cited by applicant]
Alessi et al., “New insights into mTOR signaling: mTORC2 and beyond”, Sci Signal 2(67) pe27 (2009).
[cited by applicant]
Allawi et al., “Quantitation of microRNAs using a modified Invader assay.” RNA, 10:1153-1161 (2004).
[cited by applicant]
Al-Nedawi, et al., “Intercellular transfer of the oncogenic receptor EGFRvIII by microvesicles derived from tumour cells.” Nat Cell Biol. (2008); 10(5): 619-624.
[cited by applicant]
Alvarez, et al., “Comparison of protein, microRNA, and mRNA yields using different methods of urinary exosome isolation for the discovery of kidney disease biomarkers.” Kidney Int. Nov. 2012; 82(9):1024-1032. Epub Jul. …
[cited by applicant]
Ason et al., “Differences in vertebrate microRNA expression.” PNAS, 103(39):14385-14389 (2006).
[cited by applicant]
Baj-Krzyworzeka et al., “Tumour-derived microvesicles carry several surface determinants and mRNA of tumour cells and transfer some of these determinants to monocytes.” Cancer Immunology, Immunotherapy, 55(7):808-818 (2…
[cited by applicant]
Balzar, et al., “The biology of the 17-1A antigen (Ep-CAM).” J Mol Med. (1999); 77(10): 699-712.
[cited by applicant]
Bamford et al., “The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website”, Br J Cancer 91 (2): 355-358 (2004).
[cited by applicant]
Benner et al., “Evolution, language and analogy in functional genomics.” Trends in Genetics, 17:414-418 (2001).
[cited by applicant]
Bergsmedh et al., “Horizontal transfer of oncogenes by uptake of apoptotic bodies”, Proc Natl Acad Sci USA 98(11) 6407-6411 (2001).
[cited by applicant]
Bess, et al., “Microvesicles are a source of contaminating cellular proteins found in purified HIV-1 preparations.” Virology (Mar. 1997); 230(1):134-44.
[cited by applicant]
Biernat, et al., “Predominant Expression of Mutant EGFR (EGFRvIII) is Rare in Primary Glioblastomas.” Brain Pathol (2004); 14: 131-136.
[cited by applicant]
Booth et al., “Exosomes and hiv gag bud from endosome-like domains of the t cell plasma membrane.” J Cell Biol., 172(6): 923-935 (2006). Published Online: Mar. 13, 2006.
[cited by applicant]
Bossi et al., “Molecularly imprinted polymers for the recognition of proteins: The state of the art.” Biosensors and Bioelectronics (2007); 22(6): 1131-1137.
[cited by applicant]
Bratthauer et al., “Expression of LINE-1 retrotransposons in human breast cancer”, Cancer 73(9) 2333-2336 (1994).
[cited by applicant]
Burghoff et al., “Horizontal gene transfer from human endothelial cells to rat cardiomyocytes after intracoronary ransplantation”, Cardiovasc Res 77(3) 534-543 (2008). online publish-ahead-of-print Nov. 13, 2007.
[cited by applicant]
Cadieux et al., “Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation”, Cancer Res 66(17) 846…
[cited by applicant]
Carr et al., “Circulating membrane vesicles in leukemic blood”, Cancer Res 45(11 Pt 2) 5944-5951 (1985).
[cited by applicant]
Cermelli et al., “Circulating microRNAs in patients with chronic hepatitis C and non-alcoholic fatty liver disease.” PLoS One, 6(8):e23937 (2011).
[cited by applicant]
Chabert et al., “Cell culture of tumors alters endogenous poly(ADPR)polymerase expression and activity”, Int J Cancer (1993); 53(5): 837-842.
[cited by applicant]
Chaput et al., “The potential of exosomes in immunotherapy.” Expert Opin Biol Ther., 5(6):737-747 (2005).
[cited by applicant]
Chen et al., “Real-time quantification of microRNAs by stem-loop RT-PCR.” Nucleic Acid Research, 33(20):e179 (2005).
[cited by applicant]
Chen, et al., “Microfluidic isolation and transcriptome analysis of serum microvesicles.” Lab Chip (2010); 10(4): 505-511.
[cited by applicant]
Chen, et. al., “Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases.” Cell Research (2008); 18: 997-1006.
[cited by applicant]
Cheng et al., “Advances of AKT pathway in human oncogenesis and as a target for anti-cancer drug discovery”, Curr Cancer Drug Targets 8(1) 2-6 (2008).
[cited by applicant]
Cheruvanky, et al., “Rapid isolation of urinary exosomal biomarkers using a nanomembrane ultrafiltration concentrator.” Am J Physiol Renal Physiol. (2007); 292: F1657-F1661.
[cited by applicant]
Cheung et al., “Natural variation in human gene expression assessed in lymphoblastoid cells.” Nature Genetics, 33:422-425 (2003).
[cited by applicant]
Cho et al., “Hypermethylation of CpG island loci and hypomethylation of LINE-1 and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features”, J Pathol 211 (3) 269-277 (2007).
[cited by applicant]
Choi, et al., “Proteomic Analysis of Microvesicles Derived from Human Colorectal Cancer Cells.” Journal of Proteome Rsearch (2007); 6: 4646-4655.
[cited by applicant]
Choi, et al., “Proteomic analysis of microvesicles derived from human colorectal cancer ascites.” Proteomic (2011); 11 (13): 2745-2751.
[cited by applicant]
Ciafrè et al., “Extensive modulation of a set of microRNAs in primary glioblastoma.” Biochemical and Biophysical Research Communications, 334:1351-1358 (2005).
[cited by applicant]
Clayton et al., “Human tumor-derived exosomes selectively impair lymphocyte responses to interleukin-2.” Cancer Res., 67(15):7458-7466 (2007).
[cited by applicant]
Cocucci, et al., “Shedding microvesicles: artefacts no more.” Trends in Cell Biology (2009); 19 (2): 43-51.
[cited by applicant]
Contreras-Galindo et al., “Human endogenous retrovirus K (HML-2) elements in the plasma of people with ymphoma and breast cancer”, J Virol 82(19) 9329-9336 (2008).
[cited by applicant]
Cooperberg, et al., “The Changing Face of Low-risk Prostate Cancer: Trends in Clinical Presentation and Primary Management.” J Clin Oncolog (2004); 22 (11): 2141-2149.
[cited by applicant]
Corsten et al., “Circulating MicroRNA-208b and MicroRNA-499 Reflect Myocardial Damage in Cardiovascular Disease.” Circulation Cardiovascular Genetics, 2:499-506 (2010).
[cited by applicant]
Cortez and Calin, “MicroRNA identification in plasma and serum: a new tool to diagnose and monitor diseases”, Expert Opin Biol Ther 9(6) 703-711 (2009).
[cited by applicant]
Cotton, et al., “Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations.” Proc Natl Acad Sci U S A (1988); 85 (12): 4397-4…
[cited by applicant]
Cowell et al., “Application of oligonucleotides arrays for coincident comparative genomic hybridization, ploidy status and loss of heterozygosity studies in human cancers”, Methods Mol Biol 556: 47-65 (2009).
[cited by applicant]
Daskalos et al., “Hypomethylation of retrotransposable elements correlates with genomic instability in non-small cell lung cancer.” Int J Cancer 124(1) 81-87 (2009).
[cited by applicant]
Day et al., “PCA3: from basic molecular science to the clinical lab”, Cancer Lett 301(1) 1-6 (2011).
[cited by applicant]
Deregibus et al., “Endothelial progenitor cell-derived microvesicles activate an angiogenic program in endothelial cells by a horizontal transfer of mRNA”, Blood 110(7) 2440-2448 (2007).
[cited by applicant]
Dermer “Another anniversary for the war on cancer.” Nature Biotechnology 12(3):320 (1994).
[cited by applicant]
Diehl et al., “BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions”, Nat Methods 3(7) 551-559 (2006).
[cited by applicant]
Diehl et al., “Circulating mutant DNA to assess tumor dynamics.” Nat Med., 14(9):985-999 (2008).
[cited by applicant]
Diehl et al., “Detection and quantification of mutations in the plasma of patients with colorectal tumors.” PNAS (2005); 102(45): 16268-16373.
[cited by applicant]
Dowling et al., “mTORC1-mediated cell proliferation, but not cell growth, controlled by the 4E-BPs”, Science 328 (5982) 1172-1176 (2010).
[cited by applicant]
Dressman et al., “Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations”, Proc Nall Acad Sci USA 100(15) 8817-S822 (2003).
[cited by applicant]
Duijvesz et al., “Exosomes as biomarker treasure chests for prostate cancer”, Eur Urol 59(5) 823-831 (2011).
[cited by applicant]
Eastham et al., “Relationship between clonogenic cell survival, DNA damage and chromosomal radiosensitivity in nine human cervix carcinoma cell lines” Int. Journal Radial. Biol (2001); 77(3): 295-302.
[cited by applicant]
El-Hefnawy, et al., “Characterization of amplifiable, circulating RNA in plasma and its potential as a tool for cancer diagnostics.” Clinical Chemistry, 50(3): 564-573 (2004).
[cited by applicant]
Estécio et al., “LINE-1 Hypomethylation in Cancer Is Highly Variable and Inversely Correlated with Microsatellite Instability”, PLoS One 2(5) e399 (2007).
[cited by applicant]
Extended European Search Report for European Patent Application No. 11839005.3, dated Mar. 27, 2014, 8 pages.
[cited by applicant]
Fabbri et al., “MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B.” PNAS, 104(40):15805-15810 (2007).
[cited by applicant]
Fernandez-Llama, et al., “Tamm-Horsfall protein and urinary exosome isolation.” Kidney Int. (Apr. 2010); 77(8):736-742. Epub Feb. 3, 2010.
[cited by applicant]
Fiorentino et al., “The minisequencing method: an alternative strategy for preimplantation genetic diagnosis of single gene disorders”, Mol Human Reprod 9(7) 399-410 (2003).
[cited by applicant]
Fischer and Lerman, “[11] Two-dimensional electrophoretic separation of restriction enzyme fragments of DNA.” Methods in Enzymology (1979); 68: 183-191.
[cited by applicant]
Fischer and Lerman, “Length-independent separation of DNA restriction fragments in two-dimensional gel electrophoresis.” Cell (1979); 16(1): 191-200.
[cited by applicant]
Forbes et al., “COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer”, Nucleic Acids Res 38(Database issue) D652-D657 (2010).
[cited by applicant]
Forbes et al., “COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer”, Nuclec Acids Res 39(Database issue) D945-D950 (2011).
[cited by applicant]
Forbes et al., “The Catalogue of Somatic Mutations in Cancer (COSMIC)”, Supplement 57:Unit-10.11, 32 pages (2008).
[cited by applicant]
Furnari, et al., “Malignant astrocytic glioma: genetics, biology, and paths to treatment.” Genes & Dev. (2007); 21: 2683-2710.
[cited by applicant]
Gambim, et al., “Platelet-derived exosomes induce endothelial cell apoptosis through peroxynitrite generation: experimental evidence for a novel mechanism of septic vascular dysfunction”, Crit Care 11 (5) R 107 (2007).
[cited by applicant]
Geiss et al., “Direct multiplexed measurement of gene expression with color-coded probe pairs.” Nat Biotechnol. (2008); 26 (3): 317-325.
[cited by applicant]
GenBank (Accession NM_005896) submitted Jan. 31, 2003, 4 pages.
[cited by applicant]
Gene Annot, “Probes for MYC availible on Affymetrix arrays HG-U95, HG-U 133, HG-U 133 Plus 2.0”, Weizmann Institute of Science found at URL http://genecards.weizmann.ac.il/cgi-bin/geneannot/ga_search.pl (Apr. 20, 2001, …
[cited by applicant]
Ginestra et al., “The amount and proteolytic content of vesicles shed by human cancer cell lines correlates with their in vitro invasiveness.” Anticancer Research, 18(5A): 3433-3437 (1998).
[cited by applicant]
Golan et al., “Human endogenous retrovirus (HERV-K) reverse transcriptase as a breast cancer prognostic marker”, Neoplasia 10(6) 521-533 (2008).
[cited by applicant]
Gonzales, et. al., “Urinary exosomes: is there a future?” Nephrol Dial Transplant (2008); 23 (6): 1799-1801.
[cited by applicant]
Goodier and Kazazian, Jr., “Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites”, Cell 135(1) 23-35 (2008).
[cited by applicant]
Gormally et al., “Circulating free dna in plasma or serum as biomarker of carcinogenesis: practical aspects and biological significance.” Mutat Res., 635:105-117 (2007).
[cited by applicant]
Grant, et al., “The Proteins of Normal Urine.” The Proteins of Normal Urine Journal of Clinical Pathology 1957;10:360-368.
[cited by applicant]
Greco, et al., “Argosomes: a potential vehicle for the spread of morphogens through epithelia.” Cell., 106 (5): 633-645 (2001).
[cited by applicant]
Green et al., “The prognostic significance of IDH1 mutations in younger adult patients with acute myeloid leukemia is dependent on FLT3/ITD status”, Blood 116(15) 277-2782 (2010).
[cited by applicant]
Groskopf et al., “Aptima pca3 molecular urine test: development of a method to aid in the diagnosis of prostate cancer.” Clin Chem., 52(6):1089-1095 (2006).
[cited by applicant]
Guatelli, et al., “Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication.” Proc Natl Acad Sci U S A (1990); 87 (19): 1874-1878.
[cited by applicant]
Guescini et al., “Astrocytes and Glioblastoma cells release exosomes carrying mtDNA”, J Neural Transm (2010); 117(1) 1-4.
[cited by applicant]
Hahn, “Molecular biology of double-minute chromosomes.” BioEssays (1993); 15(7): 477-484.
[cited by applicant]
Hanahan and Weinberg, “The hallmarks of cancer”, Cell 100(1) 57-70 (2000).
[cited by applicant]
Hartman et al., “Patients with IDH1 wild type anaplastic astrocytomas exhibit worse prognosis than IDH1-mutated glioblastomas, and IDH1 mutation status accounts for the unfavorable prognostic effect of higher age: impli…
[cited by applicant]
Heimberger et al., “The natural history of EGFR and EGFRvIII in glioblastoma patients”, J Transl Med 3: 38 (2005).
[cited by applicant]
Hessels et al., “DD3PCA3-based Molecular Urine Analysis for the Diagnosis of Prostate Cancer.” European Urology, 44:8-16 (2003).
[cited by applicant]
Hessels, et. al., “Detection of TMPRSS2-ERG Fusion Transcripts and Prostate Cancer Antigen 3 in Urinary Sediments May Improve Diagnosis of Prostate Cancer.” Clin Cancer Res (2007); 13 (17): 5103-5108.
[cited by applicant]
Hildebrant et al., “Genetic variations in the PI3K/PTEN/AKT/mTOR pathway are associated with clinical outcomes in esophageal cancer patients treated with chemoradiotherapy”, J Clin Oncol 27(6) 857-871 (2009).
[cited by applicant]
Holdhoff et al., “Analysis of Circulating Tumor DNA to Confirm Somatic KRAS Mutations.” J Natl Cancer Inst 101(18) 1284-1285 (2009).
[cited by applicant]
Hunter, et al., “Detection of microRNA Expression in Human Peripheral Blood Microvesicles.” PLoS One. 2008; 3(11 ):e3694. Epub Nov. 11, 2008. (Year: 2008).
[cited by applicant]
Iero et al., “Tumour-released exosomes and their implications in cancer immunity.” Cell Death and Differentiation, 15:80-88 (2008).
[cited by applicant]
Iorio et al., “MicroRNA signatures in human ovarian cancer.” Cancer Research, 67(18):8699-8707 (2007).
[cited by applicant]
Itadani Et al., “Can systems biology understand pathway activation? Gene expression signatures as surrogate markers for understanding the complexity of pathway activation”, Curr Genomics 9(5) 349-360 (2008).
[cited by applicant]
Jacquillet, et al., “Urinary vesicles: in splendid isolation.” Nephrol Dial Transplant. Jun. 2013; 28(6):1332-1335. Epub Jan. 24, 2013.
[cited by applicant]
Janowska-Wieczorek et al., “Microvesicles derived from activated platelets induce metastasis and angiogenesis in lung cancer.” Int J Cancer., 113 (5): 752-760 (2005).
[cited by applicant]
Ji et al., “MALAT-1, a novel noncoding RNA, and thymosin β4 predict metastasis and survival in early-stage non-small cell lung cancer”, Oncogene 22(39) 8031-8041 (2003).
[cited by applicant]
Johnson et al., “Surface-immobilized peptide aptamers as probe molecules for protein detection.” Anal Chem., 80:978-983 (2008).
[cited by applicant]
Jones et al., “Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.” Science, 321(5897):1801-1806 (2008).
[cited by applicant]
Kan and Dozy, “Antenatal diagnosis of sickle-cell anaemia by DNA analysis of amniotic-fluid cells.” The Lancet (1978); 312(8096): 910-912.
[cited by applicant]
Kan and Dozy, “Polymorphism of DNA sequence adjacent to human β-globin structural gene: relationship to sickle mutation.” PNAS (1978); 75(11): 5631-5635.
[cited by applicant]
Kang et al., “Mutational analysis of IDH1 codon 132 in glioblastomas and other common cancers”, Int J Cancer 125 (2) 353-355 (2009).
[cited by applicant]
Kato et al., “A monoclonal antibody IMab-1 specifically recognizes IDH1R132H, the most common glioma-derived mutation”, Biochem Biophys Res Commun 390(3) 547-551 (2009).
[cited by applicant]
Katoh and Kurata, “Association of endogenous retroviruses and long terminal repeats with human disorders”, Frontiers in Oncology (2013) 3 (234): 1-8.
[cited by applicant]
Keller, et al., “CD24 is a marker of exosomes secreted into urine and amniotic fluid.” Kidney Int. (2007); 72 (9): 1095-1102.
[cited by applicant]
Keller, et al., “Exosomes: From biogenesis and secretion to biological function.” Immunology Letters (2006); 107: 102-108.
[cited by applicant]
Kislauskis et al., “Sequences Responsible for Intracellular Localization of β-Actin Messenger RNA Also Affect Cell Phenotype.” J Cell Biol., 127:441-451 (1994).
[cited by applicant]
Kleiman et al., “HERV-K(HML-2) GAG/ENV antibodies as indicator for therapy effect in patients with germ cell tumors.” Int J Cancer 110(3) 459-461 (2004).
[cited by applicant]
Klein et al., “Combined transcriptome and genome analysis of single microstatic cells.” Nature Biotechnology, 20:387-392 (2002).
[cited by applicant]
Klemke et al., “Regulation of Cell Motility by Mitogen-activated Protein Kinase”, J Cell Biol 137(2) 481-492 (1997).
[cited by applicant]
Koga, et. al., “Purification, Characterization and Biological Significance of Tumor derived Exosomes.” Anticancer Research (2005); 25 (6A): 3703-3708.
[cited by applicant]
Kosaka et al., “Circulating microRNA in body fluid: a new potential biomarker for cancer diagnosis and prognosis”, Cancer Sci 101(10) 2087-2092 (2010).
[cited by applicant]
Kristensen and Hansen, “PCR-based methods for detecting single-locus DNA methylation biomarkers in cancer diagnostics, prognostics, and response to treatment”, Clin Chem 55(8) 1471-1483 (2009).
[cited by applicant]
Krupp, G., “Stringent RNA quality control using the Agilent 2100 bioanalyzer.” Application note, Agilent Technologies, Feb. 1, 2005, 8 pages, retrieved from the Internet http://www.chem.agilent.com/library/applications/…
[cited by applicant]
Kwoh, et al., “Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format.” Proc Natl Acad Sci U S A (1989); 86: 1173-1177.
[cited by applicant]
Landegren, et al., “A ligase-mediated gene detection technique.” Science (1988); 241(4869): 1077-1080.
[cited by applicant]
Laxman et al., “A first-generation multiplex biomarker analysis of urine for the early detection of prostate cancer.” Cancer Research, 68:645-649 (2008).
[cited by applicant]
Lee et al., “Micro RNA expression and clinical outcome of small cell lung cancer.” PLoS One, 6(6):e21300 (2011).
[cited by applicant]
Li, et al., “BEAMing up for detection and quantification of rare sequence variants.” Nat Methods. (2006); 3(2): 95-97.
[cited by applicant]
Li, et al., “Replacing PCR with COLD-PCR enriches variant DNA sequences and redefines the sensitivity of genetic testing.” Nature Medicine (2008); 14(5): 579-584.
[cited by applicant]
Liu et al., “Murine Mammary Carcinoma Exosomes Promote Tumor Growth by Suppression of NK Cell Function.” J Immunol., 176:1375-1385 (2006).
[cited by applicant]
Liu, et al., “Reconstitution, activities, and structure of the eukaryotic RNA exosome.” Cell (2006); 127 (6): 1223-1237.
[cited by applicant]
Lo and Chiu, “Prenatal diagnosis: progress through plasma nucleic acids,” Nat Rev Genet. (2007); 8(1): 71-77.
[cited by applicant]
Lo et al., “Plasma placental RNA allelic ratio permits noninvasive prenatal chromosomal aneuploidy detection.” Nat Med., 13(2):218-223 (2007).
[cited by applicant]
Lo, et al., “Automated gating offlow cytometry data via robust model-based clustering”, Cytometry 73(4) 321-332 (2008).
[cited by applicant]
Löwer et al., “The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences”, Proc Nall Acad Sci USA 93(11) 5177-5184 (1996).
[cited by applicant]
Mack et al., “Transfer of the chemokine receptor CCR5 between cells by membrane-derived microparticles: a mechanism for cellular human immunodeficiency virus 1 infection.” Nature Medicine, 6(7):769-775 (2000).
[cited by applicant]
Maheswaran, et. al., “Detection of mutations in EGFR in circulating lung-cancer cells.” N Engl J Med. (2008); 359 (4): 366-377.
[cited by applicant]
Mallardo et al., “Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain.” Proc Natl Acad Sci USA, 100(4): 2100-2105 (2003).
[cited by applicant]
Maron et al., “Gene expression analysis in pregnant women and their infants identifies unique fetal biomarkers that circulate in maternal blood.” J Clin Invest., 117(10): 3007-3019 (2007).
[cited by applicant]
May “How Many Species Are there on Earth?”, Science 241(1) 1441-1449 (1998).
[cited by applicant]
Mellinghoff, et al., “Molecular Determinants of the Response of Glioblastomas to EGFR Kinase Inhibitors.” The New England Journal of Medicine (2005); 353: 2012-2024.
[cited by applicant]
Michael A, et al., “Exosomes from human saliva as a source of microRNA biomarkers.” Oral Dis. Jan. 2010; 16(1):34-8. Epub Jul. 15, 2009. (Year: 2010).
[cited by applicant]
Miele, et al., “Autocatalytic replication of a recombinant RNA.” J Mol Biol. (1983); 171: 281-295.
[cited by applicant]
Millimaggi et al., “Tumor vesicle-associated CD147 modulates the angiogenic capability of endothelial cells.” Neoplasia 9(4):349-357 (2007).
[cited by applicant]
Miranda, et al., “Nucleic acids within urinary exosomes/microvesicles are potential biomarkers for renal disease.” Kidney International (2010); 78(2): 191-199.
[cited by applicant]
Mitchell et al., “Can urinary exosomes act as treatment response markers in prostate cancer?”, J Transl Med 7: 4 (2009).
[cited by applicant]
Modrek et al., “Genome-wide detection of alternatives splicing in expressed sequences of human genes”, Nucleic l\cids Research 29(13) 2850-2859 (2001).
[cited by applicant]
Moscatello, et al., “Frequent Expression of a Mutant Epidermal Growth Factor Receptor in Multiple Human Tumors.” Cancer Research (1995); 55: 5536-5539.
[cited by applicant]
Myers, et al., “Detection of single base substitutions by ribonuclease cleavage at mismatches in RNA:DNA duplexes.” Science (1985); 230(4731): 1242-1246.
[cited by applicant]
Nagrath et al., “Isolation of rare circulating tumour cells in cancer patients by microchip technology.” Nature, 450(7173): 1235-1239 (2007).
[cited by applicant]
Nakanishi, et. al., “PCA3 Molecular Urine Assay Correlates With Prostate Cancer Tumor Volume: Implication in Selecting Candidates for Active Surveillance.” The Journal of Urology (2008); 179 (5): 1804-1810.
[cited by applicant]
Nakazawa, et al., “UV and skin cancer: specific p53 gene mutation in normal skin as a biologically relevant exposure measurement.” Proc Natl Acad Sci U S A. (1994); 91: 360-364.
[cited by applicant]
Ng et al., “mRNA of placental origin is readily detectable in maternal plasma.” Proc Natl Acad Sci USA., 100(8):4748-4753 (2003).
[cited by applicant]
Ng et al., “The concentration of circulating corticotropin-releasing hormone mRNA in maternal plasma is increased in preeclampsia.” Clin Chem. 49(5):727-731 (2003).
[cited by applicant]
Nilsson, et al., “Prostate cancer-derived urine exosomes: a novel approach to biomarkers for prostate cancer.” British Journal of Cancer (2009); 100: 1603-1607.
[cited by applicant]
Nishikawa et al., “Immunohistochemical analysis of the mutant epidermal growth factor, ΔEGFR, in glioblastoma.” Brain Tumor Pathol 21(2) 53-56 (2004).
[cited by applicant]
Noerholm et al., “RNA expression patterns in serum microvesicles from patients with glioblastoma multiforme and controls”, BMC Cancer 12: 22 (2012).
[cited by applicant]
Novakova et al., “MicroRNA involvement in glioblastoma pathogenesis”, Biochem Biophys Res Commun 386(1) 1-5 (2009).
[cited by applicant]
Oliveira et al., “Distinct patterns of KRAS mutations in colorectal carcinomas according to gerrnline mismatch repair defects and hMLH1 methylation status”, Hum Mol Genet 13(19) 2303-2311 (2004).
[cited by applicant]
Orita, et al., “Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms.” PNAS (1989); 86(8): 2766-2770.
[cited by applicant]
Orozco and Lewis, “Flow cytometric analysis of circulating microparticles in plasma.” Cytometry A (2010); 77A(6): 502-514.
[cited by applicant]
Orozco, et al., “Membrane Protected Apoptotic Trophoblast Microparticles Contain Nucleic Acids.” The Amerian Journal of Pathology (2008); 173 (6): 1595-1608.
[cited by applicant]
Ostrowski et al., “Rab27a and Rab27b control different steps of the exosome secretion pathway”, Nat Cell Biol 12 (1) 19-30 sup pp. 1-13 (2010).
[cited by applicant]
Parsons et al., “An Integrated Genomic Analysis of Human Glioblastoma Multiforme.” Science, 321(5897): 1807-1821 (2008).
[cited by applicant]
PCT/US2011/060251, International Preliminary Report on Patentability, dated May 14, 2013, 7 pages.
[cited by applicant]
PCT/US2011/060251, International Search Report and Written Opinion, mailed Mar. 5, 2012, 9 pages.
[cited by applicant]
Pelloski, et al., “Epidermal Growth Factor Receptor Variant III Status Defines Clinically Distinct Subtypes of Glioblastoma.” Journal of Clinical Oncology (2007); 25(16): 2288-2294.
[cited by applicant]
Pisitkun, et al. Identification and proteomic profiling of exosomes in human urine. Proc Natl Acad Sci US A. Sep. 7, 2004; 101(36):13368-73. Epub Aug. 23, 2004. (Year: 2004).
[cited by applicant]
Pisitkun, et. al., “Discovery of urinary biomarkers.” Mol Cell Proteomics (2006); 5 (10): 1760-1771.
[cited by applicant]
Pleasance et al., “A comprehensive catalogue of somatic mutations from a human cancer genome”, Nature 463 (7278) 191-196 (2010).
[cited by applicant]
Rak et al., “Genetic determinants of cancer coagulopathy, angiogenesis and disease progression”, Vnitr Lek 52(Suppl 1) 135-138 (2006).
[cited by applicant]
Raposo, et al., “B lymphocytes secrete antigen-presenting vesicles.” Journal of Experimental Medicine (1996); 183: 1161-1172.
[cited by applicant]
Ratajczak et al., “Membrane-derived microvesicles: important and underappreciated mediators of cell-to-cell communication.” Leukemia, 20:1487-1496 (2006).
[cited by applicant]
Revenfeld et al., “Diagnostic and prognostic potential of extracellular vesicles in peripheral blood”, Clin Ther 36(6) 830-846 (2014).
[cited by applicant]
Roman-Gomez et al., “Repetitive DNA hypomethylation in the advanced phase of chronic myeloid leukemia”, Leuk Res 32(3) 487-490 (2008).
[cited by applicant]
Rood, IM, et al., Comparison of three methods for isolation of urinary microvesicles to identify biomarkers of nephrotic syndrome. Kidney Int. Oct. 2010; 78(8):810-6. Epub Aug. 4, 2010. (Year: 2010).
[cited by applicant]
Ruprecht et al., “Endogenous retroviruses and cancer.” Cell Mol Life Sci 65(21) 3366-3382 (2008).
[cited by applicant]
Ruprecht et al., “Human endogenous retrovirus family HERV-K(HML-2) RNA transcripts are selectively packaged into retroviral particles produced by the human germ cell tumor line Tera-1 and originate mainly from a proviru…
[cited by applicant]
Ryan, et. al., “A prospective study of circulating mutant KRAS2 in the serum of patients with colorectal neoplasia: strong prognostic indicator in postoperative follow up.” Gut (2003); 52:101-108.
[cited by applicant]
Saal and Harvey, “MicroRNAs and the kidney: coming of age.” Current Opinion in Nophrology and Hypertension, 18(4):317-323 (2009).
[cited by applicant]
Saito-Hisaminto et al., “Genome-Wide Profiling of Gene Expression in 29 Normal Human Tissues with cDNA Microarray”, DNA Research (2002); 9: 35-45.
[cited by applicant]
Sarbassov et al., “Prolonged rapamycin treatment inhibits mTORC2 assembly and Akt/PKB”, Mol Cell 22(2) 159-168 (2006).
[cited by applicant]
Schetter et al., “MicroRNA expression profiles associated with prognosis and therapeutic outcome in colon adenocarcinoma.” JAMA, 299(4):425-436 (2008).
[cited by applicant]
Shinojima et al., “Prognostic value of epidermal growth factor receptor in patients with glioblastoma multiforme”, Cancer Res 63(20) 6962-6970 (2003).
[cited by applicant]
Schmidt, et al., “QuantitativeMulti-Gene Expression Profiling of Primary Prostate Cancer.” The Prostate (2006); 66(14): 1521-1534.
[cited by applicant]
Silva et al., “Selective gene silencing by viral delivery of short hairpin RNA”, Virol J 7: 248 (2010).
[cited by applicant]
Simons and Raposo, “Exosomes—vesicular carriers for intercellular communication”, Curr Opin Cell Biol 21 (4) 575-581 (2009).
[cited by applicant]
Simpson RJ, et al. “Proteomic profiling of exosomes: current perspectives.” Proteomics. Oct. 2008; 8(19):4083-99. (Year: 2008).
[cited by applicant]
Singh et al., “Gene Expression correlates of clinical prostate cancer behavior”, Cancer Cell (2002); 1(2): 203-209.
[cited by applicant]
Skog, et al., “Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers.” Nature Cell Biology (2008); 10(12): 1470-1476.
[cited by applicant]
Sliva and Schnierle, “Selective gene silencing by viral delivery of short hairpin RNA”, Virol J 7: 248 (2010).
[cited by applicant]
Srikantan et al., “PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer”, Proc Nall Acad Sci USA 97(22) 12216-12221 (2000).
[cited by applicant]
Steemers, et al., “Whole-genome genotyping with the single-base extension assay.” Nature Methods (2006); 3: 31-33.
[cited by applicant]
Stoorvogel, et al., “The Biogenesis and Functions of Exosomes.” Traffic (2002); 3 (5): 321-330.
[cited by applicant]
Tam, W., “The emergent role of microRNAs in molecular diagnostics of cancer.” J Mol Diagn (2008); 10(5): 411-144.
[cited by applicant]
Talor and Shah, “Methods of isolating extracellular vesicles impact down-stream analyses of their cargoes.” Methods. (Oct. 2015); 87: 3-10. Epub Mar. 10, 2015.
[cited by applicant]
Taylor and Gercel-Taylor, “MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer.” Gynecol Oncol. (2008); 110: 13-21.
[cited by applicant]
Taylor and Gercel-Taylor, “Tumour-derived exosomes and their role in cancer-associated T-cell signalling defects.” British Journal of Cancer, 92 (2): 305-311 (2005).
[cited by applicant]
Tewes, et. al., “Molecular profiling and predictive value of circulating tumor cells in patients with metastatic breast cancer: an option for monitoring response to breast cancer related therapies.” Breast Cancer Res Tr…
[cited by applicant]
The Cancer Genome Atlas (TCGA) Research Network, “Comprehensive genomic characterization defines human glioblastoma genes and core pathways”, Nature 455(7216) 1061-1068 (2008).
[cited by applicant]
The International SNP Map Working Group., “A map of human genome sequence variation containing 1.42 million ingle nucleotide polymorphisms” Nature (2001); 409: 928-933.
[cited by applicant]
Théry et al., “Isolation and characterization of exosomes from cell culture supernatants and biological fluids.” Curr Protoc Cell Biol. Chapter 3:Unit 3 22.1-3.22.29, (2006).
[cited by applicant]
Théry, et al., “Exosomes: composition, biogenesis and function.” Nature Reviews Immunology (2002); 2 (8): 569-579.
[cited by applicant]
Ting et al., “Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers”, Science 331 (6017) 593-596 (2011).
[cited by applicant]
Tomlins et al., “Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer”, Science 310 (5748) 644-648 (2005).
[cited by applicant]
Tullis, et al., “Calcium protects DNase I from proteinase K: a new method for the removal of contaminating RNase from DNase I.” Anal Biochem. (1980); 107(1): 260-264.
[cited by applicant]
Valadi, et al., “Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.” Nature Cell Biology (2007); 9: 654-659.
[cited by applicant]
Van Dijk, et al., “Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways.” RNA (2007); 13: 1027-1035.
[cited by applicant]
Velculescu, et al., “Serial Analysis of Gene Expression.” Science (1995); 270(5235): 484-487.
[cited by applicant]
Voisset et al., “Human RNA “Rumor” Viruses: the Search for Novel Human Retroviruses in Chronic Disease.” Microbiol Mol Biol Rev 72(1) 157-196 (2008).
[cited by applicant]
Wang-Johanning et al., “Human endogenous retrovirus K triggers an antigen-specific immune response in breast cancer patients”, Cancer Res 68(14) 5869-5877 (2008).
[cited by applicant]
Went et al., “Frequent epcam protein expression in human carcinomas.” Hum Pathol., 35:122-128 (2004).
[cited by applicant]
Wieckowski and Whiteside, “Human tumor-derived vs dendritic cell-derived exosomes have distinct biologic roles and molecular profiles.” Immunol Res., 36(1-3):247-254 (2006).
[cited by applicant]
Wong et al., “Circulating placental RNA in maternal plasma is associated with a preponderance of 5′ mRNA fragments: implications for noninvasive prenatal diagnosis and monitoring.” Clin Chem., 51(10):1786-1795 (2005).
[cited by applicant]
Wood et al., “The genomic landscapes of human breast and colorectal cancers.” Science, 318:1108-1113 (2007).
[cited by applicant]
Wright and Lange, “Newer potential biomarkers in prostate cancer”, Rev Urol 9(4) 207-213 (2007).
[cited by applicant]
Yan et al., “1DH1 and 1DH2 mutations in gliomas”, N Engl J Med 360(8) 765-773 (2009).
[cited by applicant]
Yoshimoto et al., “Development of a real-lime RT-PCR assay for detecting EGFRvIII in glioblastoma samples”, Clin Cancer Res 14(2) 488-493 (2008).
[cited by applicant]
Yu and Rak, “Shedding of tissue factor (TF)-containing microparticles rather than alternatively spliced TF is the main source of TF activity released from human cancer cells.” Journal of Thrombosis and Haemostatis (2004…
[cited by applicant]
Yu et al., “Oncogenic events regulating tissue factor expression.” Haematological Reports, 1(9):18-20 (2005).
[cited by applicant]
Yuan et al., “Transfer of MicroRNAs by Embryonic Stem Cell Microvesicles.” PLoS One 4(3) e4772 (2009).
[cited by applicant]
Zhou, et al., “Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery.” Kidney Int. (2006); 69(8): 1471-1476.
[cited by applicant]
Moenner, et al., “Ribonuclease inhibitor protein of human erythrocytes: characterization, loss of activity in response to oxidative stress, and association with Heinz bodies,” Blood Cells Mol Dis. Jun. 1998; 24(2): 149-…
[cited by applicant]