IP Library Granted Patent US 12,404,342
Granted Patent B2
US 12,404,342 · App. 17/822,638 · Granted Sep 2, 2025

Conjugates for targeted cell surface editing

Inventors: Elliot C. Woods (Burlingame, CA); Han Xiao (East Palo Alto, CA); Carolyn R. Bertozzi (Menlo Park, CA); Melissa Gray (Stanford, CA)
Assignee: The Board of Trustees of the Leland Stanford Junior University
C07K16/32A61P35/00C07K19/00C12N9/2402C12Y302/01018C07K2317/732C07K2319/035C07K2319/33C07K2319/74
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,404,342
App. No.
17/822,638
Granted
Sep 2, 2025
Kind
B2
Abstract

Provided are conjugates including a targeting moiety that binds to a cell surface molecule of a target cell and a target cell surface-editing enzyme. Also provided are compositions and kits that include the conjugates, as well as methods of using the conjugates. Methods of making conjugates are also provided.

Claims (25)

1. A method of treating cancer in an individual in need thereof, the method comprising administering to the individual a therapeutically effective amount of a conjugate comprising (a) an antibody that binds to a tumor-associated cell surface molecule of a cancer cell and (b) a sialidase conjugated to the antibody, whereupon, after administration to the individual, the sialidase cleaves a sialic acid from the surface of the cancer cell, wherein the sialic acid is a ligand for a sialic acid-binding Ig-like lectin (Siglec) receptor, wherein the sialidase is a prokaryotic sialidase or a eukaryotic sialidase.

2. The method of claim 1 , wherein the conjugate, when administered to the individual, modulates an immune pathway in the individual.

3. The method of claim 1 , wherein the conjugate, when administered to the individual, cleaves all or a portion of the sialic acid from the surface of the cancer cell.

4. The method of claim 1 , wherein the Siglec receptor is an inhibitory immune receptor present on an immune cell selected from the group consisting of: a natural killer (NK) cell, a macrophage, a monocyte, a neutrophil, a dendritic cell, a T cell, a B cell, a mast cell, a basophil, and an eosinophil.

5. The method of claim 1 , wherein the Siglec receptor is Siglec 7.

6. The method of claim 1 , wherein the Siglec receptor is Siglec 9.

7. The method of claim 1 , wherein the sialidase is a bacterial sialidase.

8. The method of claim 7 , wherein the bacterial sialidase is a Salmonella typhimurium sialidase or a Vibrio cholerae sialidase.

9. The method of claim 8 , wherein the sialidase is a Vibrio cholerae sialidase.

10. The method of claim 1 , wherein the sialidase is a mammalian neuraminidase.

11. The method of claim 10 , wherein the mammalian neuraminidase is a human neuraminidase.

12. The method of claim 11 , wherein the sialidase is a human neuraminidase selected from the group consisting of: human neuraminidase 1, human neuraminidase 2, human neuraminidase 3, and human neuraminidase 4.

13. The method of claim 1 , wherein the antibody is an IgG, a single chain Fv (scFv), Fab, (Fab) 2 , or (scFv′) 2 .

14. The method of claim 1 , wherein the antibody comprises a fragment crystallizable (Fc) region.

15. The method of claim 14 , wherein the sialidase is conjugated to the Fc region of the antibody.

16. The method of claim 1 , wherein the sialidase is conjugated to a heavy chain of the antibody.

17. The method of claim 16 , wherein the sialidase is conjugated to the C-terminus of the heavy chain.

18. The method of claim 1 , wherein the sialidase is conjugated to the antibody via a linker.

19. The method of claim 1 , wherein the conjugate is a fusion protein.

20. The method of claim 1 , wherein cleavage of sialic acid on the surface of the cancer cell enhances natural killer (NK) cell activation by increasing natural-killer group 2 member D protein (NKG2D) binding to a NKG2D ligand on the cancer cell surface.

21. The method of claim 1 , wherein the cancer cell is a carcinoma cell.

22. The method of claim 1 , wherein the cancer cell is selected from the group consisting of: a breast cancer cell, an ovarian cancer cell, a gastric cancer cell, and a colon cancer cell.

23. The method of claim 1 , wherein the cell surface molecule is human epidermal growth factor receptor 2 (HER2).

24. The method of claim 1 , wherein the antibody is trastuzumab.

25. The method of claim 1 , wherein the antibody is selected from the group consisting of: cetuximab, daratumumab, girentuximab, panitumumab, ofatumumab, and rituximab.

Assignments (4)
CORRECTIVE ASSIGNMENT TO CORRECT THE APPLICATION NUMBER 17/882,638 PREVIOUSLY RECORDED AT REEL: 061348 FRAME: 0215. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Dec 9, 2022
From: WOODS, ELLIOT C.; XIAO, HAN; GRAY, MELISSA
To: THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY
Reel/Frame 062116/0620 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 7, 2022
From: BERTOZZI, CAROLYN R.
To: HOWARD HUGHES MEDICAL INSTITUTE
Reel/Frame 061348/0204 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 7, 2022
From: WOODS, ELLIOT C.; XIAO, HAN; GRAY, MELISSA
To: THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY
Reel/Frame 061348/0215 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 7, 2022
From: HOWARD HUGHES MEDICAL INSTITUTE
To: THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY
Reel/Frame 061348/0229 →
Continuity (3)
Continuation 16308732
Provisional Application 62357645 · Jul 1, 2016
Related Publication 20230287140A1 · Sep 14, 2023
References Cited (51)
US 4510129A · Knop et al. · 1985 [cited by applicant]
US 4975278A · Senter et al. · 1990 [cited by applicant]
US 6877169B2 · Acquaviva · 2005 [cited by applicant]
US 7645448B2 · Fang et al. · 2010 [cited by applicant]
US 7807174B2 · Fang et al. · 2010 [cited by applicant]
US 8084036B2 · Yu et al. · 2011 [cited by applicant]
US 8398971B2 · Fang et al. · 2013 [cited by applicant]
US 8512710B2 · Fang et al. · 2013 [cited by applicant]
US 8623419B2 · Malakhov et al. · 2014 [cited by applicant]
US 8722869B2 · Fang et al. · 2014 [cited by applicant]
US 9212353B2 · Fang et al. · 2015 [cited by applicant]
US 9764007B2 · Fang et al. · 2017 [cited by applicant]
US 10280191B2 · Deamer · 2019 [cited by applicant]
US 10300116B2 · Moss · 2019 [cited by applicant]
US 10328128B2 · Moss · 2019 [cited by applicant]
US 10351828B2 · Hawley · 2019 [cited by applicant]
US 10525109B2 · Fang et al. · 2020 [cited by applicant]
US 10918736B2 · Kim et al. · 2021 [cited by applicant]
US 10940185B2 · Yasukawa et al. · 2021 [cited by applicant]
US 20110135570A1 · Janatpour · 2011 [cited by applicant]
US 20110142912A1 · Moser et al. · 2011 [cited by applicant]
US 20150152187A1 · Sun · 2015 [cited by examiner]
US 20170119859A1 · Moss · 2017 [cited by applicant]
US 20180271997A1 · Wang · 2018 [cited by examiner]
US 20190247460A1 · Connaris et al. · 2019 [cited by applicant]
US 20200164049A1 · Moss · 2020 [cited by applicant]
US 20200222511A1 · Moss · 2020 [cited by applicant]
WO WO2014037785 · 2014 [cited by applicant]
WO WO2014037785A2 · 2014 [cited by examiner]
WO WO2016038064 · 2016 [cited by applicant]
WO WO2017100725 · 2017 [cited by applicant]
WO WO2018231661 · 2018 [cited by applicant]
WO WO2020018996 · 2020 [cited by applicant]
Bhat et al., 2014, BioProcess International, downloaded from https://bioprocessintl.com/manufacturing/monoclonal-antibodies/next-step-homogenous-bioconjugate-development-optimizing-payload-plac (Year: 2014). [cited by examiner]
Miyagi et al., Glycobiology vol. 22 No. 7 pp. 880-896, 2012 (Year: 2012). [cited by examiner]
Gray et al. (2020) “Targeted Glycan Degradation Potentiates the Anticancer Immune Response in Vivo” Nature Chemical Biology, vol. 16, No. 2, pp. 1376-1384. [cited by applicant]
Alley and Snodgrass (1977) “Effectiveness of Neuraminidase in Experimental Immunotherapy of Two Murine Pulmonary Carcinomas” Cancer Research, 37:95-101. [cited by applicant]
Bhat et al. (2021) “The Next Step in Homogenous Bioconjugate Development: Optimizing Payload Placement and Conjugate Composition” BioProcess International, downloaded from https://bioprocessintl.com/manufacturing/monocl… [cited by applicant]
Bosch et al. (2013) “Drugs Targeting B-Cells in Autoimmune Diseases” Springer Science & Business Media, pp. 1-4. [cited by applicant]
Chu et al. (2006) “Lineage Determination of CD20-B-Cell Neoplasms: An Immunohistochemical Study” Am J Clin Pathol 126:534-544. [cited by applicant]
Hudak et al. (2014) “Glycocalyx engineering reveals a Siglec-based mechanism for NK cell immunoevasion” Nat. Chem.Biol. 10:69-75. [cited by applicant]
Jandus et al. (2014) “Interactions between Siglec-7/9 receptors and ligands influence NK cell-dependent tumor immunosurveillance” J. Clin. Invest. 124:1810-1820. [cited by applicant]
Kim et al. (2011) “Features and applications of bacterial sialidases” Appl Microbiol Biotechnol., 91:1-15. [cited by applicant]
Malakhov et al. (2006) “Sialidase Fusion Protein as a Novel Broad-Spectrum Inhibitor of Influenza Virus Infection” Antimicrobial Agents and Chemotherapy, 50(4):1470-1479. [cited by applicant]
McCombs et al. (2016) “Enhanced Cross-Linking of Diazirine-Modified Sialylated Glycoproteins Enabled through Profiling of Sialidase Specificities” ACS Chem. Biol., 11:185-192. [cited by applicant]
Mitri et al. (2012) “The HER2 Receptor in Breast Cancer: Pathophysiology, Clinical Use, and New Advances in Therapy” Chemotherapy Research and Practice vol. 2012, Article ID 743193, 7 pages. [cited by applicant]
Rabuka et al (2012) “Site-specific chemical protein conjugation using genetically encoded aldehyde tags” Nature Protocols, 7(6):1052-1067. [cited by applicant]
“Trastuzumab Product Approval Information—Licensing Action Sep. 25, 1998”. U.S. Food and Drug Administration (FDA). Retrieved Jun. 7, 2021. [cited by applicant]
Tseng et al. (2007) “Desialylation of human cancer cells leading apoptosis by treatment with purified and overexpressed nanI cloned from Clostridium perfringens ATCC 10543” Enzyme and Microbial Tech., 41(1-2):5-12. [cited by applicant]
Van Rooijen et al. (1992) “Monoclonal antibody mediated targeting of enzymes—A comparative study using the mouse spleen as a model system” Journal Of Immunological Methods, 151(1-2):149-155. [cited by applicant]
Xiao et al. (2016) “Precision glycocalyx editing as a strategy for cancer immunotherapy” Proceedings Of The National Academy Of Sciences, 113(37):10304-10309. [cited by applicant]