Coronavirus vaccine
The present invention is directed to a nucleic acid suitable for use in treatment or prophylaxis of an infection with a coronavirus, preferably with a Coronavirus SARS-CoV-2, or a disorder related to such an infection, preferably COVID-19. The present invention is also directed to compositions, polypeptides, and vaccines. The compositions and vaccines preferably comprise at least one of said nucleic acid sequences, preferably nucleic acid sequences in association a lipid nanoparticle (LNP). The invention is also directed to first and second medical uses of the nucleic acid, the composition, the polypeptide, the combination, the vaccine, and the kit, and to methods of treating or preventing a coronavirus infection, preferably a Coronavirus infection.
1. A purified RNA comprising:
(a) a 5′ cap structure;
(b) at least one coding sequence encoding a SARS-CoV-2 spike protein at least 95% identical to SEQ ID NO: 10 that is a pre-fusion stabilized spike protein (S_stab) comprising K986P and V987P stabilizing substitutions and further comprising a D614G amino acid substitution relative to SEQ ID NO: 10; and
(c) a 3′ untranslated region (UTR) comprising at least one poly(A) sequence having 30 to 200 adenosine nucleotides.
2. The purified RNA of claim 1 , wherein the 5′ cap is a m7G, cap0, cap1, cap2, a modified cap0, or a modified cap1 structure.
3. The purified RNA of claim 2 , wherein the 5′ cap is a cap1 structure.
4. The purified RNA of claim 1 , wherein the purified RNA comprises a terminal poly(A) sequence of 30 to 200 adenosine nucleotides.
5. The purified RNA of claim 1 , further comprising a 5′ UTR.
6. The purified RNA of claim 1 , wherein the at least one coding sequence encoding the SARS-CoV-2 spike protein has a G/C content of at least about 50%.
7. The purified RNA of claim 1 , wherein the purified RNA is a replicon RNA.
8. The purified RNA of claim 7 , wherein the replicon RNA encodes replicase elements derived from an alphavirus.
9. The purified RNA of claim 8 , wherein the replicon RNA encodes replicase elements derived from VEE.
10. The purified RNA of claim 1 , wherein the SARS-CoV-2 spike protein comprises the D614G amino acid substitution and a E484K amino acid substitution relative to SEQ ID NO: 10.
11. The purified RNA of claim 10 , wherein the SARS-CoV-2 spike protein comprises at least one of the following amino acid substitutions relative to SEQ ID NO: 10: D80A, D215G, K417N, N501Y, and/or A701V.
12. The purified RNA of claim 11 , wherein the SARS-CoV-2 spike protein comprises the following amino acid substitutions relative to SEQ ID NO: 10: D80A, D215G, K417N, E484K, N501Y, D614G, and A701V.
13. The purified RNA of claim 3 , wherein the purified RNA comprises a 1-methylpseudouridine nucleotide substitution at one or more uracil position(s).
14. The purified RNA of claim 1 , wherein the purified RNA has been purified by RP-HPLC and/or TFF.
15. The purified RNA of claim 14 , wherein the purified RNA has been purified by TFF.
16. The purified RNA of claim 1 , wherein the SARS-CoV-2 spike protein comprises an amino acid sequence at 98% identical to SEQ ID NO: 10.
17. The purified RNA of claim 1 , wherein the at least one coding sequence comprises a nucleic acid sequence at least 80% identical to SEQ ID NO: 137.
18. The purified RNA of claim 17 , wherein the at least one coding sequence comprises a nucleic acid sequence at least 90% identical to SEQ ID NO: 137.
19. A pharmaceutical composition comprising the purified RNA of claim 1 and at least one pharmaceutically acceptable carrier.
20. The composition of claim 19 , wherein the RNA is complexed or associated with lipid nanoparticles (LNPs).
21. The composition of claim 19 , wherein the LNPs comprises:
(i) at least one cationic lipid component;
(ii) at least one neutral lipid component;
(iii) at least one sterol component; and
(iv) at least one PEG-lipid component,
wherein (i) to (iv) are in a molar ratio of about 20-60% cationic lipid component, 5-25% neutral lipid component, 25-55% sterol component, and 0.5-10% PEG-lipid component.
22. The composition of claim 20 , wherein the at least one PEG-lipid component is present in the LNPs in a molar ratio of about 0.5% to 5%.
23. The composition of claim 22 , wherein the at least one PEG-lipid component is PEG-2000-DMG.
24. The composition of claim 23 , wherein the at least one neutral lipid component is DSPC and the at least one sterol component is cholesterol.
25. The composition of claim 24 , wherein the LNPs have a mean diameter of from about 50 nm to 200 nm as determined by dynamic light scattering.
26. A method of stimulating an immune response to a SARS-CoV-2 spike protein in a subject comprising administering to the subject an effective amount of the composition of claim 25 .
27. The method of claim 26 , wherein the purified RNA is a replicon RNA that encodes replicase elements derived from an alphavirus.
28. The method of claim 27 , wherein the SARS-CoV-2 spike protein comprises at least one of the following amino acid substitutions relative to SEQ ID NO: 10: E484K, D80A, D215G, K417N, N501Y, and/or A701V.
29. The method of claim 26 , wherein the purified RNA comprises a terminal poly(A) sequence of 30 to 200 adenosine nucleotides and a 5′ cap that is a cap1 structure.
30. The method of claim 29 , wherein the at least one coding sequence comprises a nucleic acid sequence at least 80% identical to SEQ ID NO: 137.
31. The method of claim 30 , wherein the at least one coding sequence comprises a nucleic acid sequence at least 90% identical to SEQ ID NO: 137.
32. The method of claim 27 , wherein the replicon RNA encodes replicase elements derived from VEE.
33. The method of claim 27 , wherein the LNPs have a mean diameter of from about 50 nm to 200 nm as determined by dynamic light scattering and a polydispersity index (PDI) of 0.1 to 0.5 as determined by dynamic light scattering.
34. The method of claim 33 , wherein the LNPs have a PDI of less than 0.2 as determined by dynamic light scattering.
35. The method of claim 27 , wherein the subject is a human subject.
36. The method of claim 35 , wherein the composition comprises about 1 μg to about 200 μg of the RNA.
37. The method of claim 36 , wherein the composition comprises about 5 μg to about 100 μg of the RNA.
38. The method of claim 26 , wherein the method comprises administering the composition to the subject at least twice.
39. A container comprising a vaccine dose comprising the pharmaceutical composition of claim 25 , wherein about 1 μg to about 200 μg of the RNA is present in said vaccine dose.
40. The container of claim 39 , wherein about 5 μg to about 100 μg of the RNA is present in said vaccine dose.
41. The container of claim 39 , wherein the 5′ cap of the RNA is a m7G, cap0, cap1, cap2, a modified cap0, or a modified cap1 structure.
42. The container of claim 41 , wherein the 5′ cap is a cap1 structure.
43. The container of claim 39 , wherein the RNA comprises a terminal poly(A) sequence of 30 to 200 adenosine nucleotides.
44. The container of claim 39 , wherein the RNA further comprises a 5′ UTR.
45. The container of claim 39 , wherein the at least one coding sequence encoding the SARS-CoV-2 spike protein has a G/C content of at least about 50%.
46. The container of claim 45 , wherein 100% of the uracil positions in the RNA are replaced with 1-methylpseudouridine.
47. The container of claim 45 , wherein the RNA is a replicon RNA.
48. The container of claim 47 , wherein the replicon RNA encodes replicase elements derived from an alphavirus.
49. The container of claim 48 , wherein the replicon RNA encodes replicase elements derived from VEE.
50. The purified RNA of claim 1 , wherein the purified RNA is a mRNA.