IP Library Granted Patent US 12,365,869
Granted Patent B2
US 12,365,869 · App. 18/541,917 · Granted Jul 22, 2025

Systems for production of products to promote nitrogen use efficiency in plants

Inventors: Luis Francisco Velazquez (Grand Prairie, TX); Allana Kay Welsh (Denton, TX); Neissa Maryann Pinzon (Frisco, TX); Maud Ann Wrightson Hinchee (Little Elm, TX); Robert D Chisholm (Mckinney, TX); Mohammad Kamrul Hassan (Aubrey, TX); Leslie Michelle Perry (Fort Worth, TX); Shashi S Rajbanshi (Frisco, TX); Katherine McElhany Williams (Corinth, TX)
Assignee: TENFOLD TECHNOLOGIES, LLC
C12N1/20A01N63/22A01N63/25A01P21/00C05F11/08C12M23/58C12M27/00C12M29/18C12M47/02
View Patent ↗
Loading inventors, assignments & file history…
Monitor This Case
Get email alerts when status or documents change.
Order Certified Copies
Most orders are placed with the USPTO same day — all within 24 business hours.
Order via The Patent Place →
Pre-filled with this patent's details
Quick Facts
Patent No.
US 12,365,869
App. No.
18/541,917
Granted
Jul 22, 2025
Kind
B2
Abstract

The present disclosure provides methods and systems for production of biostimulants that promote nitrogen use efficiency in plants. Embodiments described include methods of making a biostimulant composition in a bioreactor system that includes two or more containers arranged in series. The bioreactor system may include an established population of a nitrogen use efficiency-promoting microbial strain. The method may include operating the bioreactor system by transferring into the system an aqueous feedstock that comprises a microbial consortium, transferring working fluid between containers of the system, and collecting a product. The method may further include maintaining a concentration of a nitrogen use efficiency-promoting microbial strain in the system.

Claims (47)

1. A bioreactor system comprising:

(a) a conduit comprising a stream of an aqueous feedstock in fluid communication with a first container comprising a volume of a first working fluid and a first container outflow port in fluid communication with the first working fluid and located below the top of the first working fluid, wherein the aqueous feedstock comprises a microbial consortium, wherein the first working fluid comprises an established population of a nitrogen use efficiency-promoting microbial strain;

(b) a second container in fluid communication with the first container, wherein the second container comprises a second working fluid and a second container inflow port in fluid communication with the first container outflow port and arranged to allow hydraulically balanced continuous flow of the first working fluid from the first container outflow port to the second container inflow port driven by gravity, and wherein the second container comprises a second container outflow port located below the top of the second working fluid, and wherein the second container is configured to maintain a population of the nitrogen use efficiency-promoting microbial strain;

(c) one or more additional containers arranged in series with the first container and the second container, wherein each of the one or more additional containers comprises a volume of a working fluid and is in fluid communication with at least one other container in the series, wherein either the second container or at least one of the one or more additional containers comprises a product outflow stream port, wherein at least two of the first container, the second container, or the one or more additional containers are fluidized bed reactors, and wherein the one or more additional containers are configured to maintain a population of the nitrogen use efficiency-promoting microbial strain; and

(d) a product outflow stream in fluid communication with the product outflow stream port, wherein the product outflow stream port is configured to allow hydraulically balanced continuous flow of the product outflow stream driven by gravity.

2. The bioreactor system of claim 1 , wherein the nitrogen use efficiency-promoting microbial strain is one that performs nitrogen fixation, promotes nitrogen fixation in the tissues of plants, recruits nitrogen fixers to the root zones or other tissues of plants, or increases organic nitrogen content and/or mineralization of organic nitrogen in soil.

3. The bioreactor system of claim 1 , wherein the nitrogen use efficiency-promoting microbial strain is positive for a nifH gene.

4. The bioreactor system of claim 1 , wherein the nitrogen use efficiency-promoting microbial strain is one that promotes plant growth in a nitrogen-poor growth medium.

5. The bioreactor system of claim 1 , wherein the nitrogen use efficiency-promoting microbial strain is of the genus Kosakonia, Klebsiella, Rahnella, Kluyvera, Enterobacter, Achromobacter, Microbacterium, Gluconobacter, Methylobacterium, Pseudomonas, Pantoea, Azospirillum, Azocarus, Herbaspirillum, Burkholderia, Cyanobacteria, Bacillus , or Paenibacillus.

6. The bioreactor system of claim 1 , wherein the nitrogen use efficiency-promoting microbial strain is of the species Kosakonia sacchari, Klebsiella variicola, Rahnella aquatilis, Kluyvera intermedia, Kosakonia pseusosacchari, Enterobacter spp., Achromobacter marplatensis, Azopirillum lipoferum, Microbacterium murale, Gluconobacter diazotrophicus, Methylobacterium symbioticum, Paenibacillus borealis, Bacillus megaterium ( Priestia megaterium ), or Paenibacillus sonchi.

7. The bioreactor system of claim 1 , wherein the bioreactor system is a continuous flow bioreactor system and the stream of the aqueous feedstock is a continuous stream.

8. The bioreactor system of claim 1 , wherein each of the first container and the one or more additional containers comprises a concentration of the nitrogen use efficiency-promoting microbial strain that remains at least 1×10 2 CFU/ml during operation of the bioreactor system.

9. The bioreactor system of claim 1 , wherein the microbial consortium comprises at least 1×10 5 CFU/ml of microbes.

10. The bioreactor system of claim 1 , wherein the aqueous feedstock further comprises an organic material digestible by microbes present in the first container, the second container, and the one or more additional containers.

11. The bioreactor system of claim 10 , wherein the organic material comprises manure or material derived from manure.

12. The bioreactor system of claim 1 , wherein the aqueous feedstock further comprises rock phosphate particles.

13. The bioreactor system of claim 1 , wherein the microbial consortium comprises microbes derived from manure and rock phosphate particles.

14. The bioreactor system of claim 1 , wherein the container comprising the product outflow stream port is a clarifier container configured to separate a portion of a working fluid in the clarifier container into a supernatant portion and a floc portion.

15. The bioreactor system of claim 14 , wherein the clarifier container comprises one or more floc folding flights configured to agitate settled floc in the clarifier container without resuspending solids in the floc portion into the supernatant portion.

16. The bioreactor system of claim 14 , further comprising a floc return stream that flows from the clarifier to an earlier container in the series.

17. The bioreactor system of claim 14 , wherein the product outflow stream comprises the supernatant portion.

18. The bioreactor system of claim 17 , wherein the product outflow stream comprises at least 1×10 4 CFU/ml of the nitrogen use efficiency-promoting microbial strain.

19. The bioreactor system of claim 17 , wherein the product outflow stream comprises at least 1×10 2 CFU/ml of a sporulated form of the nitrogen use efficiency-promoting microbial strain.

20. The bioreactor system of claim 17 , wherein the product outflow stream comprises a total dry weight of 0.2 to 2.5 mg/ml.

21. The bioreactor system of claim 17 , wherein the product outflow stream has a chemical oxygen demand of 80 to 500 mg/L.

22. The bioreactor system of claim 17 , wherein the product outflow stream has an electrical conductivity between 1.3 and 3.0 mS/cm.

23. The bioreactor system of claim 1 , wherein the first working fluid comprises malate at a concentration of at least 0.2% w/v.

24. The bioreactor system of claim 1 , wherein the first working fluid comprises soy flour at a concentration of at least 0.2% w/v.

25. The bioreactor system of claim 1 , wherein the first working fluid comprises microaerobic conditions.

26. The bioreactor system of claim 25 , wherein the working fluid in at least one of the one or more additional containers comprises microaerobic conditions.

27. The bioreactor system of claim 1 , wherein the system has a hydraulic retention time of at least 5 days.

28. The bioreactor system of claim 1 , wherein the first working fluid further comprises an established population of a second nitrogen use efficiency-promoting microbial strain.

29. The bioreactor system of claim 28 , wherein the second nitrogen use efficiency-promoting microbial strain is of the species Kosakonia sacchari, Klebsiella variicola, Rahnella aquatilis, Kluyvera intermedia, Kosakonia pseusosacchari, Enterobacter spp., Achromobacter marplatensis, Azopirillum lipoferum, Microbacterium murale, Gluconobacter diazotrophicus, Methylobacterium symbioticum, Paenibacillus borealis, Bacillus megaterium ( Priestia megaterium ), or Paenibacillus sonchi.

30. The bioreactor system of claim 1 , wherein the first working fluid comprises a total population of microbes positive for a nifH gene of at least 1×10 5 CFU/ml.

31. The bioreactor system of claim 1 , wherein the fluidized bed reactors are configured to maintain a higher concentration of the nitrogen use efficiency-promoting microbial strain in the bioreactor system as compared to packed bed reactors.

32. The bioreactor system of claim 1 , wherein the second container is configured to maintain a concentration of the nitrogen use efficiency-promoting microbial strain at at least the concentration of the nitrogen use efficiency-promoting microbial strain in the first working fluid in the first container.

33. The bioreactor system of claim 1 , wherein the fluidized bed reactors comprise particles of an inorganic substrate.

34. The bioreactor system of claim 33 , wherein the particles of the inorganic substrate are rock phosphate particles.

35. The bioreactor system of claim 28 , wherein the nitrogen use efficiency-promoting microbial strain is of the genus Paenibacillus , and the second nitrogen use efficiency-promoting microbial strain is of the genus Bacillus.

36. The bioreactor system of claim 35 , wherein the nitrogen use efficiency-promoting microbial strain is of the species Paenibacillus borealis and the second nitrogen use efficiency-promoting microbial strain is of the species Bacillus megaterium.

37. The bioreactor system of claim 36 , wherein the Paenibacillus borealis comprises the Paenibacillus borealis strain deposited under ATCC Accession No. PTA-127654 and the Bacillus megaterium comprises the Bacillus megaterium strain deposited under ATCC Accession No. PTA-127653.

38. The bioreactor system of claim 37 , wherein the first working fluid further comprises a Paenibacillus sonchi strain deposited under ATCC Accession No. PTA-127655.

39. The bioreactor system of claim 17 , wherein the product outflow stream comprises at least 1×10 2 CFU/ml of the nitrogen use efficiency-promoting microbial strain.

40. The bioreactor system of claim 1 , wherein the second container is configured to maintain the population of the nitrogen use efficiency-promoting microbial strain for at least 5 days.

41. The bioreactor system of claim 40 , wherein the one or more additional containers are configured to maintain the population of the nitrogen use efficiency-promoting microbial strain for at least 5 days.

42. The bioreactor system of claim 1 , wherein the second container is configured to maintain the population of the nitrogen use efficiency-promoting microbial strain for at least 2 months.

43. The bioreactor system of claim 42 , wherein the one or more additional containers are configured to maintain the population of the nitrogen use efficiency-promoting microbial strain for at least 2 months.

Assignments (1)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 2, 2024
From: VELAZQUEZ, LUIS FRANCISCO; WELSH, ALLANA KAY; PINZON, NEISSA MARYANN; HINCHEE, MAUD ANN WRIGHTSON; CHISHOLM, ROBERT D.; HASSAN, MOHAMMAD KAMRUL; PERRY, LESLIE MICHELLE; RAJBANSHI, SHASHI S.; MCELHANY WILLIAMS, KATHERINE
To: TENFOLD TECHNOLOGIES, LLC
Reel/Frame 066978/0799 →
Continuity (4)
Provisional Application 63610535 · Dec 15, 2023
Provisional Application 63510615 · Jun 27, 2023
Provisional Application 63509263 · Jun 20, 2023
Related Publication 20240425789A1 · Dec 26, 2024
References Cited (176)
US 4245432A · Dannelly · 1981 [cited by applicant]
US 4339456A · Rushing · 1982 [cited by applicant]
US 4372080A · Rushing · 1983 [cited by applicant]
US 4465017A · Simmons · 1984 [cited by applicant]
US 4634587A · Hsiao · 1987 [cited by applicant]
US 4735015A · Schmolka · 1988 [cited by applicant]
US 4759945A · Nemecek et al. · 1988 [cited by applicant]
US 5328942A · Akhtar et al. · 1994 [cited by applicant]
US 5389399A · Bazin et al. · 1995 [cited by applicant]
US 5554445A · Struszczyk et al. · 1996 [cited by applicant]
US 5580544A · Dao et al. · 1996 [cited by applicant]
US 5661103A · Harms et al. · 1997 [cited by applicant]
US 5791084A · Kohno et al. · 1998 [cited by applicant]
US 5821112A · Botto et al. · 1998 [cited by applicant]
US 5849320A · Turnblad et al. · 1998 [cited by applicant]
US 5876739A · Turnblad et al. · 1999 [cited by applicant]
US 5918413A · Otani et al. · 1999 [cited by applicant]
US 5939356A · Wellinghoff · 1999 [cited by applicant]
US 6054044A · Hoffland · 2000 [cited by examiner]
US 9187381B1 · Lanz · 2015 [cited by applicant]
US 10577358B2 · Davidson et al. · 2020 [cited by applicant]
US 10793484B2 · Dent et al. · 2020 [cited by applicant]
US 11357233B2 · Verstraete et al. · 2022 [cited by applicant]
US 11565979B2 · Temme et al. · 2023 [cited by applicant]
US 11618720B2 · Dent et al. · 2023 [cited by applicant]
US 11866698B2 · Wigley et al. · 2024 [cited by applicant]
US 11871752B2 · Wigley et al. · 2024 [cited by applicant]
US 20090318292A1 · Kang · 2009 [cited by applicant]
US 20100154299A1 · Kobayashi et al. · 2010 [cited by applicant]
US 20120297846A1 · Lanciault et al. · 2012 [cited by applicant]
US 20130244061A1 · Dhar et al. · 2013 [cited by applicant]
US 20130324406A1 · Chisholm · 2013 [cited by examiner]
US 20180072633A1 · Dent et al. · 2018 [cited by applicant]
US 20190039964A1 · Temme et al. · 2019 [cited by applicant]
US 20200131096A1 · Kanagalingam · 2020 [cited by examiner]
US 20220033868A1 · Danquah et al. · 2022 [cited by applicant]
US 20220151241A1 · Reisinger et al. · 2022 [cited by applicant]
US 20230234898A1 · Dent et al. · 2023 [cited by applicant]
US 20230292764A1 · Santiago-Ortiz et al. · 2023 [cited by applicant]
EP 2674411A1 · 2013 [cited by examiner]
KR 20130123276A · 2013 [cited by examiner]
WO WO2013056084A2 · 2013 [cited by applicant]
WO WO2020245675A1 · 2020 [cited by applicant]
WO WO2021150993A1 · 2021 [cited by examiner]
WO WO2024263793 · 2024 [cited by applicant]
Achouak, W. et al., Comparative phylogeny of rrs and nifH genes in the Bacillaceae, International Journal of Systematic Bacteriology, vol. 49, (1999):961-967. [cited by applicant]
Ali, A. et al., Functional analysis and genome mining reveal high potential of biocontrol and plant growth promotion in nodule-inhabiting bacteria within Paenibacillus polymyxa complex, Frontiers in Microbiology, vol. 1… [cited by applicant]
Ambrosini, A. et al., Diazotrophic bacilli isolated from the sunflower rhizosphere and the potential of Bacillus mycoides B38V as biofertiliser, Annals of Applied Biology, vol. 168, (2016):93-110. [cited by applicant]
Ambrosini, A. et al., Genome sequence of Bacillus mycoides B38V, a growth-promoting bacterium of sunflower, Genome Announcements, vol. 3, 2 (2015):1-2. [cited by applicant]
Amicucci, M.J. et al., Strategy for structural elucidation of polysaccharides: elucidation of a maize mucilage that harbors diazotrophic bacteria, Analytical Chem., vol. 91, (2019):7254-7265. [cited by applicant]
Anand, R. et al., Detection of GFP-labeled Peanibacillus polymyxa in autofluorescing pine seedling tissues, Biol. Fertil. Soils, vol. 49, (2013):111-118. [cited by applicant]
Aslam, S. et al., Dual action of chromium-reducing and nitrogen-fixing Bacillus megaterium-ASNF3 for improved agro-rehabilitation of chromium-stressed soils, Biotech, vol. 6, (2016):125. [cited by applicant]
Barber, L.E. et al., Acetylene reduction (nitrogen fixation) associated with corn inoculated with Spirillum, Applied and Environmental Microbiology, vol. 32, 2 (1976):108-113. [cited by applicant]
Bastida, F. et al., Soil microbial diversity-biomass relationships are driven by soil carbon content across global biomes, The ISME Journal, vol. 15, 7 (2021):2081-2091. [cited by applicant]
Benedetto, N.A.D. et al., The role of plant growth promoting bacteria in improving nitrogen use efficiency for sustainable crop production: a focus on wheat, AIMS Microbiology, vol. 3, 3 (2017):413-434. [cited by applicant]
Bennett, A.E. et al., Plant lignin content altered by soil microbial community, New Phytologist, vol. 206, (2015):166-174. [cited by applicant]
Berge, O. et al., Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov. isolated from plant roots, soil and food, International Journal of Systematic and Evolutionary Microbiology, vol. 52, (2002):607-616. [cited by applicant]
Bloch, S.E. et al., Biological nitrogen fixation in maize: optimizing nitrogenase expression in a root-associated diazotroph, Journal of experimental botany, vol. 71, 15 (2020):4591-4603. [cited by applicant]
Carvalho, T.L.G. et al., Nitrogen signalling in plant interaction with associative and endophytic diazotrophic bacteria, vol. 65, 19 (2014):5631-5642. [cited by applicant]
Chakraborty, S. et al., Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles, vol. 12, 4085 (2021). [cited by applicant]
Chakraborty, S. et al., Scripting a new dialogue between diazotrophs and crops, Trends in Microbiology, (2023). [cited by applicant]
Chauhan, H. et al., Inoculation with selected microbial consortia not only enhances growth and yield of French bean but also reduces fertilizer application under field condition, Scientia Horticulture, vol. 197, (2015):… [cited by applicant]
Choo, Q. et al., Phylogeny and characterization of three nifH-Homologous genes from Paenibacillus azotofixans, Applied and Environmental Microbiology, vol. 69, 6 (2003):3658-3662. [cited by applicant]
Clark, A., The merit of corn biological products used in-furrow, B.S. University of Missouri, (2012). [cited by applicant]
Combes-Meynet, E. et al., The Pseudomonas secondary metabolite 2,4-diacetylphloroglucinol is a signal inducing rhizoplane expression of Azospirillum genes involved in plant-growth promotion, MPMI e-Xtra, vol. 24, 2 (201… [cited by applicant]
Davis, W.G., Nitrogen use in cereal crops with Pivot Bio Proven inoculant, B.S., Kansa State University, 2017. [cited by applicant]
Delavaux, C.S. et al., Beyond nutrients: a meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils, Ecology, vol. 98, 8 (2017):2111-2119. [cited by applicant]
Diaz-Garcia, L. et al., Dilution-to-Stimulation/Extinction Method: a combination enrichment strategy to develop a minimal and versatile lignocellulolytic bacterial consortium, Applied and Environmental Microbiology, vol… [cited by applicant]
Ding, Y. et al., Isolation and identification of nitrogen-fixing bacilli from plant rhizospheres in Beijing region, Journal of Applied Microbiology, vol. 99, (2005):1271-1281. [cited by applicant]
Domeignoz-Horta, L.A. et al., Direct evidence for the role of microbial community composition in the formation of soil organic matter composition and persistence, Nature, vol. 1, 1 (2021). [cited by applicant]
Domeignoz-Horta, L.A. et al., Microbial diversity drives carbon use efficiency in a model soil, Nature Communications, vol. 11, (2020):3684. [cited by applicant]
Dudeja, S.S. et al., Interaction of endophytic microbes with legumes, Journal of Basic Microbiology, vol. 52, (2012):248-260. [cited by applicant]
Elo, S. et al., Humus bacteria of Norway spruce stands: plant growth promoting properties and birch, red fescue and alder colonizing capacity, FEMS Microbiology Ecology, vol. 31, (2000):143-152. [cited by applicant]
Elo, S. et al., Paenibacillus borealis sp. nov., a nitrogen fixing species isolated from spruce forest humus in Finland, vol. 51, (2001):535-545. [cited by applicant]
Farzadfar, S. et al., Soil organic nitrogen: an overlooked but potentially significant contribution to crop nutrition, Plant Soil, vol. 462, (2021):7-23. [cited by applicant]
Fernandes, G.D.C. et al., Alternative nitrogenase and pseudogenes: unique features of the Paenibacillus riograndensis nitrogen fixation system, Research in Microbiology, vol. 165, (2014):571-580. [cited by applicant]
Figueiredo, M.V.B. et al., Plant growth-promoting rhizobacteria for improving nodulation and nitrogen fixation in the common bean (Phaseolus vulgaris L.), World J. Microbiol. Biotechnology, vol. 24, (2008)L1187-1193. [cited by applicant]
Gupta, R.S. et al., Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. … [cited by applicant]
Halim, M.A. et al., Genome sequence of a Gram-Positive diazotroph, Paenibacillus durus type strain ATCC 35681, American Society for Microbiology, Genome Announcements, vol. 4, 1 (2016):1-2. [cited by applicant]
Halim, M.A. et al., Transcriptional analysis of nitrogen fixation in Paenibacillus durus during growth in nitrogen-enriched medium, Letters in applied microbiology vol. 72,5 (2021): 610-618. [cited by applicant]
Hamaoka, K. et al., Diversity of endophytic bacterial microbiota in grapevine shoot xylems varies depending on wine grape-growing region, cultivar, and shoot growth stage, Scientific Reports, vol. 12, (2022):15772. [cited by applicant]
Hestrin, R. et al., Synergies between mycorrhizal fungi and soil microbial communities increase plant nitrogen acquisition, Communications Biology, vol. 2, (2019):233. [cited by applicant]
Horn, M.A. et al. Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the… [cited by applicant]
Huang, W. et al., Comparative genomic analysis reveals metabolic diversity of different Paenibacillus groups, Applied Microbiology and Biotechnology, vol. 104, (2020):10133-10143. [cited by applicant]
Iniguez, A.L. et al., Nitrogen fixation in wheat provided by Klebsiella penumoniae 342, Molecular Plant-Microbe Interactions, vol. 17, 10 (2004):1078-1085. [cited by applicant]
Itoh, K. et al., Changes in acetylene reduction activities and nifH genes associated with field- grown sweet potatoes with different nursery farmes and cultivars, Horticulture, vol. 5, 53 (2019). [cited by applicant]
Kang, A. et al., Nitrogen fertilization modulates beneficial rhizosphere interactions through signaling effect of nitric oxide, Plant Physiology, vol. 00, (2021):1-12. [cited by applicant]
Kim, K.K. et al., Reclassification of Paenibacillus ginsengisoli as a later heterotypic synonym of Paenibacillus anaericanus, International Journal of Systematic and Evolutionary Microbiology, vol. 61, (2011):2101-2106. [cited by applicant]
Kim, T. et al., Quantifying nitrogen loss hotspots and mitigation potential for individual fields in the US corn belt with a metamodeling approach, Environm. Res. Lett., vol. 16, (2021):075008. [cited by applicant]
Kisiel, A. et al., Medicago truncatula Gaertn. as a model for understanding the mechanisms of growth promotion by bacteria from rhizosphere and nodules of alfalfa, Planta, vol. 243, (2016):1169-1189. [cited by applicant]
Kisiel, A. et al., Oxidative status of Medicago truncatula seedlings after inoculation with rhizobacteria of the genus Pseudomonas Paenibacillus and Sinorhizobium, International Journal of Molecular Sciences, vol. 24, (… [cited by applicant]
Kloepper, J.W. et al., A review of issues related to measuring colonization of plant roots by bacteria, Can. J. Microbiol., vol. 38, (1992). [cited by applicant]
Korir, H. et al., Co-inoculation effect of rhizobia and plant growth promoting rhizobacteria on common bean growth in a low phosphorus soil, Frontiers in Plant Science, vol. 8, 141 (2017). [cited by applicant]
Lagunas, B. et al., Rhizobial nitrogen fixation efficiency shapes endosphere bacterial communities and Medicago truncatula host growth, Microbiome, vol. 11, (2023):146. [cited by applicant]
Lawson, C.E. et al., Common principles and best practices for engineering microbiomes, Nature Reviews, Microbiology, vol. 17, (2019):725-741. [cited by applicant]
Li, C.Y. et al., Nitrogen-fixing Bacillus sp. associated with Douglas-fir tuberculate ectomycorrhizae, Plant and Soil, vol. 140, (1992):35-40. [cited by applicant]
Li, Q. et al., Paenibacillus Sinensis sp. nov., a Nitrogen-fixing species isolated from plant rhizospheres, Research Square, (2021). [cited by applicant]
Li, Y. et al., Diazotroph Paenibacillus triticisoli BJ-18 drives the variation in bacterial, diazotrophic and fungal communities in the rhizosphere and root/shoot endosphere of maize, International Journal of Molecular … [cited by applicant]
Li, Y. et al., Diazotrophic Paenibacillus beijingensis BJ-18 provides nitrogen for plant and promotes plant growth, nitrogen uptake and metabolism, Frontiers in Microbiology, vol. 10, 1119 (2019). [cited by applicant]
Liu, X. et al., Paenibacillus strains with nitrogen fixation and multiple beneficial properties for promoting plant growth, PeerJ, vol. 7, (2019):e7445. [cited by applicant]
Logan, N.A. et al., Endospore-forming soil bacteria, Soil Biology, vol. 27, 1-353. [cited by applicant]
Lopes, L.D. et al., Sugars and jasmonic acid concentration in root exudates affect maize rhizosphere bacterial communities, (2022). [cited by applicant]
Ma, Y. et al., Paenibacillus sabinae sp. nov., a nitrogen-fixing species isolated from the rhizosphere soils of shrubs, International Journal of Systematic and Evolutionary Microbiology, vol. 57, (2007):6-11. [cited by applicant]
Mandon, K. et al., Redox regulation in diazotrophic bacteria in interaction with plants, Antioxidants, vol. 10, (2021):880. [cited by applicant]
Masood, S. et al., Bacillus pumilus promotes the growth and nitrogen uptake of tomato plants under nitrogen fertilization, Scientia Horticulturae, vol. 272, (2020):109581. [cited by applicant]
No Author, Altura, Plant Nutrition (product information catalogue). [cited by applicant]
No Author, Ativus PK, Plant Nutrition (product information catalogue). [cited by applicant]
No Author, Black Label ZN, Plant Nutrition (product information catalogue). [cited by applicant]
No Author, Enhancing Crop Performance, Activating the Soil (poster—Sound). [cited by applicant]
No Author, Levitate, Plant Nutrition (product information catalogue). [cited by applicant]
No Author, Prologue, Lead into P1, Nature Solubilizing Technology (product information catalogue). [cited by applicant]
No Author, Utrisha N nutrient efficiency optimizer, Application in Corn. [cited by applicant]
No Author, Utrisha N nutrient efficiency optimizer, Application in Soybean. [cited by applicant]
No Author, Utrisha N nutrient efficiency optimizer, specimen label. [cited by applicant]
Ospina-Betancourth, C. et al., Enrichment of Nitrogen-Fixing Bacteria in a Nitrogen-deficient wasterwater treatment system, Environmental Science and Technology, vol. 54, (2020):3539-3548. [cited by applicant]
Padda, K.P. et al., Plant growth promotion and nitrogen fixation in canola (Brassica napus) by an endophytic strain of Paenibacillus polymyxa and its GFP-tagged derivative in a long-term study, Botany, vol. 94, 12 (2016… [cited by applicant]
Pankievicz, V.C.S. et al., Diazotrophic Bacteria and Their Mechanisms to Interact and Benefit Cereals, Molecular Plant-Microbe Interactions, vol. 34, 5 (2021):491-498. [cited by applicant]
Papik, J. et al., The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity, Biotechnology advances, vol. 44, (2020). [cited by applicant]
Park, J. et al., Synergistic effect of co-inoculation with phosphate-solubilizing bacteria, Korean Journal of Agricultural Science, vol. 43, 3 (2016):401-414. [cited by applicant]
Puri, A. et al., Can a diazotrophic endophyte originally isolated from lodgepole pine colonize an agricultural crop (corn) and promote its growth?, Soil Biology and Biochemistry, vol. 89, (2015):210-216. [cited by applicant]
Puri, A. et al., Evidence of nitrogen fixation and growth promotion in canola (Brassica napus L.) by an endophytic diazotroph Paenibacillus polymyxa P2b-2R, Biol. Fertl. Soils, (2015). [cited by applicant]
Puri, A. et al., Seedling growth promotion and nitrogen fixation by a bacterial endophyte Paenibacillus polymyxa P2b-2R and its GFP derivative in corn in a long-term trial, Symbiosis, vol. 69, (2016):123-129. [cited by applicant]
Puri, A., Plant growth promotion and nitrogen fixation by Paenibacillus polymyxa in corn and canola, B. Tech., Punjab Agricultural University, (2013). [cited by applicant]
Rodriguez-Gonzalez, C. et al., High resistance of sludge enriched with nitrogen-fixing bacteria to ammonium salts and its potential as a biofertilizer, Bioengineering, vol. 8, 55 (2021). [cited by applicant]
Rosado, A.S. et al., Genetic diversity of nifH gene sequences in Paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments, Applied and Enviro… [cited by applicant]
Rozycki, H. et al., Diazotrophic bacteria in root-free soil and in the root zone of pine (Pinus sylvestris L.) and oak (Quercus robur L.), Applied Soil Ecology, vol. 12, (1999):239-250. [cited by applicant]
Ruiz-Herrera, J. et al., A novel intracellular nitrogen-fixing symbiosis made by Ustilago maydis and Bacillus spp., New Phytologist, vol. 207, (2015):769-777. [cited by applicant]
Rybakova, D. et al., Endophytes-assisted biocontrol: novel insights in ecology and the mode of action of Paenibacillus, Plant Soil, (2015). [cited by applicant]
Saifuddin, M. et al., Microbial carbon use efficiency predicted from genome-scale metabolic models, Nature Communications, vol. 10, (2019):3568. [cited by applicant]
Samain, E. et al., Efficacy and durability of Paenibacillus sp. strain B2 in co-inoculation with Arthrobacter sp. SSM-004 and Microbacterium sp. SSM-001 for growth promotion and resistance induction in wheat against Myc… [cited by applicant]
Saxena, A.K. et al., Bacillus species in soil as a natural resource for plant health and nutrition, Journal of Applied Microbiology, vol. 128, (2022):1583-1594. [cited by applicant]
Seldin, L. et al., Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soils and grass roots, International Journal of Systematic Bacteriology, vol. 34, 4 (1984):451-456. [cited by applicant]
Shrestha, A. et al., Enhancement of nitrogen-fixing activity of Enterobacteriaceae strains isolated from sago palm (Metroxylon sagu) by microbial interaction with non-nitrogen fixers, Microbes Environmen., vol. 22, 1 (2… [cited by applicant]
Singh, R.K. et al., Diversity of nitrogen-fixing rhizobacteria associated with sugarcane: a comprehensive study of plant-microbe interactions for growth enhancement in Saccharum spp., BMC Plant Biology, vol. 20, (2020):… [cited by applicant]
Singh, R.K. et al., Exploring the corn microbiome: a detailed review on current knowledge, techniques, and future directions, PhytoFrontiers, vol. 2, (2022):158-175. [cited by applicant]
Smercina, D.N. et al., To fix or not to fix: controls on free-living nitrogen fixation in the rhizosphere, Applied and Environmental Microbiology, vol. 85, 6 (2019):e0256-18. [cited by applicant]
Solanki, A.C. et al., Co-inoculation of non-symbiotic bacteria bacillus and paraburkholderia can improve the soybean yield, nutrient uptake and soil parameters, Molecular Biotechnology, (2023). [cited by applicant]
Sprent, J.I. et al., Evolution of nitrogen-fixing symbioses, Proceedings of the Royal Society of Edinburgh, vol. 85B, (1985):215-237. [cited by applicant]
Stajkovic, O. et al., Isolation and characterization of endophytic non-rhizobial bacteria from root nodules of alfalfa (Medicago sativa L.), Botanica SERBICA, vol. 33, 1 (2009):107-114. [cited by applicant]
Sun, X. et al., Bacillus velezensis stimulates rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions, ISME Journal, vol. 16, (2022):774-787. [cited by applicant]
Tang, A. et al., Effects of selected functional bacteria on maize growth and nutrient use efficiency, Microorganisms, vol. 8, (2020):854. [cited by applicant]
Timmusk, S. et al., Paenibacillus polymyxa invades plant roots and forms biofilms, Applied and Environmental Microbiology, vol. 71, 11 (2005):7292-7300. [cited by applicant]
Van Deynze, A. et al., Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota, PLOS Biology, vol. 16, (2018):e2006352. [cited by applicant]
Waller, S. et al., Examining the effects of the nitrogen environment on growth and N2-fization of endophytic Herbaspirillum seropedicae in maize seedlings by applying 11C radiotracing, Microorganisms vol. 9, (2021):1582. [cited by applicant]
Wang, Y. et al., A novel lignin degradation bacterial consortium for efficient pulping, Bioresource Technology, vol. 139, (2013):113-119. [cited by applicant]
Wang, Z. et al., Complementary resource preferences spontaneously emerge in diauxic microbial communities, Nature Communications, vol. 12, (2021):6661. [cited by applicant]
Waters, M.T. et al., Strigolactone signaling and evolution, Annu. Rev. Plant Biol., vol. 68, (2017):291-322. [cited by applicant]
Wen, A. et al., Enabling biological nitrogen fixation for cereal crops in fertilized fields, ACS Synthetic Biology, vol. 10, (2021):3264-3277. [cited by applicant]
White, J.F. et al., Rhizophagy cycle: an oxidative process in plants for nutrient extraction from symbiotic microbes, Microorganisms, vol. 6, 3 (2018):95. [cited by applicant]
Wolinska, K.W. et al., Trytophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots, PNAS, vol. 118, 49 (2021):e211115211118. [cited by applicant]
Worrich, A. et al., Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments, Nature Communications, vol. 8, (2017). [cited by applicant]
Xie, J. et al., Comparative genomic and functional analysis reveal conservation of plant growth promoting traits in Paenibacillus polymyxa and its closely related species, Scientific Reports, vol. 6, (2015):21329. [cited by applicant]
Xiong, C. et al., Host selection shapes crop microbiome assembly and network complexity, New Phytologist, vol. 229, (2021):1091-1104. [cited by applicant]
Yang, H. et al., Substrate utilization by endophytic bacteria Paenibacillus polymyxa P2b-2R that may facilitate bacterial entrance and survival inside diverse plant hosts, FACETS, vol. 2, (2017):120-130. [cited by applicant]
Yoneyama, K. et al., How do nitrogen and phosphorus deficiencies affect strigolactone production and exudation?, Planta, vol. 235, (2012):1197-1207. [cited by applicant]
Yu, X. et al., Co-inoculation with phosphate-solubilizing and nitrogen-fixing bacteria on solubilization of rock phosphate and their effect on growth promotion and nutrient uptake by walnut, European Journal of Soil Bio… [cited by applicant]
Farges, B. et al. Axenic cultures of Nitrosomonas europaea and Nitrobacter winogradskyi in autotrophic conditions: a new protocol for kinetic studies. Applied biochemistry and biotechnology 167(5):1076-1091 (2012). [cited by applicant]
Grommen, R. et al. An improved nitrifying enrichment to remove ammonium and nitrite from freshwater aquaria systems. Aquaculture 211(1-4):115-124 (2002). [cited by applicant]
Jeong, J W. et al. A Mathematical Model for Examining Growth and Sporulation Processes of Bacillus subtilis. Biotechnology and Bioengineering 35(2):160-184 (1990). [cited by applicant]
Lindemann, Stephen R. et al. Engineering microbial consortia for controllable outputs. The ISME Journal 10(9):2077-2084 (2016). [cited by applicant]
Pommerening-Roser, Andreas et al. Phylogenetic Diversity within the Genus Nitrosomonas. Systematic and Applied Microbiology 19(3):344-351 (1996). [cited by applicant]
Said, Sami Ben, and Dani Or. Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia. Frontiers in Microbiology 18:1125, 1-8 (2017). [cited by applicant]
Van Kessel, Maartje A.H.J. et al. Complete nitrification by a single microorganism. Nature 528(7583):555-559 (2015). [cited by applicant]
Aziz, Ramy K. et al. The RAST Server: rapid annotations using subsystems technology. BMC genomics 9(75):1-15 (2008). [cited by applicant]
Gaby, John Christian and Daniel H Buckley. The Use of Degenerate Primers in qPCR Analysis of Functional Genes Can Cause Dramatic Quantification Bias as Revealed by Investigation of nifH Primer Performance. Microbial eco… [cited by applicant]
Hugerth, Luisa W and Anders F Andersson. Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing. Frontiers in microbiology 8(1561):1-22 (2017). [cited by applicant]
Kim, Kil Yong. et al. Enterobacter agglomerans, phosphate solubilizing bacteria, and microbial activity in soil: Effect of carbon sources. Soil Biology and Biochemistry 30(8-9):995-1003 (1998). [cited by applicant]
Mirza, et al. Clinical Significance of Promoter Hypermethylation of ERß and RARß2 in tumor and serum DNA in Indian breast cancer patients. Annals of Surgical Oncology 19(9):3107-3115 (2012). [cited by applicant]
Needleman, Saul B, and Christian D. Wunsch. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. Journal of Molecular Biology 48(3):443-453 (1970). [cited by applicant]
PCT/US2024/034839 International Search Report and Written Opinion dated Dec. 17, 2024. [cited by applicant]
PCT/US2024/034839 Invitation to Pay Additional Fees dated Oct. 11, 2024. [cited by applicant]
Pearson, William R, and David J. Lipman. Improved Tools for Biological Sequence Comparison. Proceedings of the National Academy of Sciences 85(8):2444-2448 (1988). [cited by applicant]
Poly, Franck. et al. Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Research in microbiology 152(1):95-103 (2001). [cited by applicant]
Smith, Temple F., and Michael S. Waterman. Comparison of biosequences. Advances in applied mathematics 2(4):482-489 (1981). [cited by applicant]
U.S. Appl. No. 18/541,671 Office Action dated Sep. 5, 2024. [cited by applicant]
U.S. Appl. No. 18/541,671 Notice of Allowance dated Mar. 21, 2025. [cited by applicant]