IP Library Granted Patent US 8,124,766
Granted Patent B2
US 8,124,766 · App. 12/621,109 · Granted Feb 28, 2012

Inhibitors of diacylglycerol acyltransferase

Assignee: Madrigal Pharmaceuticals, Inc.
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Quick Facts
Patent No.
US 8,124,766
App. No.
12/621,109
Granted
Feb 28, 2012
Kind
B2
Abstract

Provided herein are compounds of the formula (I): as well as pharmaceutically acceptable salts thereof, wherein the substituents are as those disclosed in the specification. These compounds, and the pharmaceutical compositions containing them, are useful for the treatment of diseases such as, for example, obesity, type II diabetes mellitus and metabolic syndrome.

Claims (79)

1. A compound of formula (I):

wherein:

X is oxygen, sulfur or nitrogen;

Y is carbon or nitrogen;

Z is carbon or nitrogen;

R1 is lower alkyl, halo lower alkyl, alkoxy, lower alkyl alkoxy or absent;

R2, R2′, independently of each other, is halogen, alkoxy, lower alkyl, haloloweralkyl, haloalkoxy, benzyloxy or absent;

R3 is hydrogen or lower alkyl, wherein if X is oxygen or sulfur, then R3 is absent; and

Q is piperazine-1-carboxylic acid lower alkyl ester, piperidine-1-carboxylic acid lower alkyl ester, piperazin-1-yl-2,2-dimethyl-4-oxo-lower akanoic acid, piperidin-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid benzyl ester, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid, piperidine-1-carbonyl-4-cyclohexanecarboxylic acid, piperazine-1-carbonyl-2-cyclopentanecarboxylic acid, N-lower alkoxy lower alkyl-N-lower alkyl-amino, N-cycloloweralkyl-N-lower alkyl-amino, N-pyrrolidine-1-carboxylic acid lower alkyl ester, O-pyrrolidine-1-carboxylic acid lower alkanoic ester, O-pyrrolidine-1-carboxylic acid lower alkyl ester, pyrrolidine-3-ylamino-1-carboxylic acid lower alkyl ester, pyrrolidin-3-ylamino-1-carboxylic acid lower alkyl amide, piperidin-1-yl-4-oxo-2-phenyl-lower alkanoic acid, piperidine-1-carbonyl-2-cyclopentanecarboxylic acid, piperidin-1-yl-2-oxo-lower alkyl-cyclopentanecarboxylic acid, piperazin-1-yl-4-oxo-lower alkyl acid, piperidin-1-yl-4-oxo-lower alkanoic acid, piperazin-1-yl-2-oxo-ethyl-3-methyl-lower alkanoic acid, piperazin-1-yl-4-oxo-2-cyclohexyl-butyric acid, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidin-3-oxy-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, pyrrolidin-3-oxy-1-yl-4-benzoic acid, 2,4-dioxo-thiazolidin-5-yl-acetyl-piperazin-1-yl or piperazin-1-yl-4-benzoic acid,

or a pharmaceutically acceptable salt thereof.

2. The compound according to claim 1 , wherein X is sulfur.

3. The compound according to claim 1 , wherein X is nitrogen.

4. The compound according to claim 1 , wherein Y is carbon.

5. The compound according to claim, 1 , wherein Z is nitrogen.

6. The compound according to claim 1 , wherein Z is carbon.

7. The compound according to claim 1 , wherein R1 is hydrogen or lower alkyl.

8. The compound according to claim 1 , wherein R2 or R2′, independently of each other, is alkoxy, lower alkyl or absent.

9. The compound according to claim 1 , wherein R3 is lower alkyl or hydrogen.

10. The compound according to claim 1 , wherein Q is piperazine-1-carboxylic acid tert-butyl ester, piperazine-1-carboxylic acid ethyl ester, piperazin-1-yl-2,2-dimethyl-4-oxo-butyric acid, piperidin-1-yl-2,2-dimethyl-4-oxo-butyric acid, piperazine-1-carbonyl-trans-4-cyclohexanecarboxylic acid, piperidine-1-carbonyl-trans-4-cyclohexanecarboxylic acid, (1R, 2R)-piperazine-1-carbonyl-2-cyclopentanecarboxylic acid, N-2-methoxyethyl-N-methyl-amino, N-cyclopropyl-N-methyl-amino or (S)-pyrrolidin-3-ylamino-1-carboxylic acid ethyl ester.

11. The compound according to claim 1 , wherein Q is piperidin-1-yl-4-oxo-2-phenyl-butyric acid, piperidin-1-yl-2-oxo-ethyl-cyclopentanecarboxylic acid, piperazin-1-yl-4-oxo-butyric acid, piperazin-1-yl-2-oxo-ethyl-3-methyl-butyric acid, (S)-pyrrolidin-3-ylamino-1-carboxylic acid tert-butyl amide, (S)-pyrrolidin-3-yloxy-1-yl-2,2-dimethyl-4-oxo-butyric acid, (S)-pyrrolidin-3-yloxy-1-yl-4-benzoic acid, (S)-pyrrolidin-3-yloxy-1-carboxylic acid ethyl ester, or 2,4-dioxo-thiazolidin-5-yl-acetyl-piperazin-1yl.

12. A compound, selected from the group consisting of:

4-(4-{5-[(4-chloro-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyrie acid,

4-(4-{5-[(5-bromo-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid,

4-(4-{5-[(4,5-dichloro-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid,

trans-4-(4-{5-[(1-ethyl-4-methoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazine-1-carbonyl)-cyclohexane carboxylic acid,

(1R,2R)-2-(4-4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazine-1-carbonyl)-cyclopentanecarboxylic acid,

(S)-3-{5-[(4-chloro-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester,

1-ethyl-4-methyl-1H-indole-2-carboxylic acid [6-((S)-1-tert-butylcarbarnoyl-pyrrolidin-3-ylamino)-pyridin-3-yl]-amide,

4-(4-{4-[(4,5-dichloro-1-ethyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid,

4-((S)-3-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenoxy}-pyrrolidin-1-yl)-2,2-dimethyl-4-oxo butyric acid,

4-((S)-3-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenoxy}-pyrrolidin-1-yl)-benzoic acid,

4-ethoxy-1-ethyl-1H-indole-2-carboxylic acid (4-{4-[2-(2,4-dioxo-thiazolidin-5-yl)-acetyl]-piperazin-1-yl}-phenyl)-amide,

3-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenoxyl}-pyrrolidine-1-carboxylic acid ethyl Ester,

4-(4-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid,

trans-4-(4-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazine-1-carbonyl)-cyclohexanecarboxylic acid and

trans-4-(4-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperidine-1-carbonyl)-cyclohexanecarboxylic acid or a pharmaceutical acceptable salt thereof.

13. The compound of claim 1 wherein said compound has the formula:

or a pharmaceutically acceptable salt thereof.

14. The compound of claim 13 wherein Q is piperazine-1-carboxylic acid lower alkyl ester, piperazin-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid benzyl ester, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid, piperazine-1-carbonyl-2-cyclopentanecarboxylic acid, piperazin-1-yl-4-oxo-lower alkanoic acid, piperidin-1-yl-4-oxo-lower alkanoic acid, piperazin-1-yl-2-oxo-ethyl-3-methyl-lower alkanoic acid, piperazin-1-yl-4-oxo-2-cyclohexyl-lower alkanoic acid, 2,4-dioxo-thiazolidin-5-yl-acetyl-piperazin-1-yl or piperazin-1-yl-4-lower alkanoic acid.

15. The compound of claim 14 wherein said compound is 4-(4-{5-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid or a pharmaceutically acceptable salt thereof.

16. The compound of claim 14 wherein said compound is 4-{5-[(1-ethyl-4,6-dimethoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazine-1-carboxylic acid tert-butyl ester or a pharmaceutically acceptable salt thereof.

17. The compound of claim 14 wherein said compound is 4-(4-{5-[(4,5-dichloro-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid or a pharmaceutically acceptable salt thereof.

18. The compound of claim 14 wherein said compound is 4-(4-{5-[(1-ethyl-4-methoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-yl)-piperazine-1-carbonyl)-cyclohexanecarboxylic acid or a pharmaceutically acceptable salt thereof.

19. The compound of claim 14 wherein said compound is 4-(4-{5-[(1-ethyl-4-methoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazine-1-carbonyl)-cyclohexanecarboxylic acid benzyl ester or a pharmaceutically acceptable salt thereof.

20. The compound of claim 14 wherein said compound is 4-{5-[(4-chloro-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-yl}-piperazine-1-carboxylic acid tert-butyl ester or a pharmaceutically acceptable salt thereof.

21. The compound of claim 14 wherein said compound is 4-{5-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-yl}-piperazine-1-carboxylic acid tert-butyl ester or a pharmaceutically acceptable salt thereof.

22. The compound of claim 13 wherein Q is N-lower alkoxy lower alkyl-N-lower alkyl-amino or N-cycloloweralkyl-N-lower alkyl-amino.

23. The compound of claim 22 wherein said compound is 1-ethyl-5-trifluoromethoxy-1H-indole-2-carboxylic acid {6-[(2-methoxy-ethyl)-methyl-amino]-pyridin-3-yl}-amide or a pharmaceutically acceptable salt thereof.

24. The compound of claim 22 wherein said compound is 2-(4-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]phenyl}-piperidine-1-carbonyl)-cyclopentanecarboxylic acid or a pharmaceutically acceptable salt thereof.

25. The compound of claim 22 wherein said compound is 1-ethyl-5-methoxy-1H-indole-2-carboxylic acid {6-[(2-methoxy-ethyl)-methyl-amino]-pyridin-3-yl}-amide or a pharmaceutically acceptable salt thereof.

26. The compound of claim 22 wherein said compound is 5-chloro-1-ethyl-1H-indole-2-carboxylic acid [6-(cyclopropyl-methyl-amino)-pyridin-3-yl]amide or a pharmaceutically acceptable salt thereof.

27. The compound of claim 13 wherein Q is N-pyrrolidine-1-carboxylic acid lower alkyl ester, O-pyrrolidine-1-carboxylic acid lower alkanoic ester, O-pyrrolidine-1-carboxylic acid lower alkyl ester, pyrrolidine-3-ylamino-1-carboxylic acid lower alkyl ester, pyrrolidin-3-ylamino-1-carboxylic acid tert-butyl amide, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidin-3-oxy-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, or pyrrolidin-3-oxy-1-yl-4-benzoic acid.

28. The compound of claim 27 wherein said compound is 3-{5-[(5-bromo-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

29. The compound of claim 27 wherein said compound is 3-{5-[(1-ethyl-5-methoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

30. The compound of claim 27 wherein said compound is 1-ethyl-4-methyl-1H-indole-2-carboxylic acid [6-1-tert-butylcarbamoyl-pyrrolidin-3-ylamino)-pyridin-3-yl]-amide or a pharmaceutically acceptable salt thereof.

31. The compound of claim 27 wherein said compound is (3-{5-[(1-ethyl-4,6-dimethoxy-1H-indole-2-carbonyl)-amino]-pyridin-2-ylamino}pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

32. The compound of claim 27 wherein said compound is (S)-3-{5-[(1-ethyl-4-methyl-1H-indole-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

33. The compound of claim 27 wherein said compound is 3-{5-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

34. The compound of claim 1 wherein said compound is

or a pharmaceutically acceptable salt thereof.

35. The compound of claim 34 wherein Q is piperazine-1-carboxylic acid lower alkyl ester, piperazin-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid benzyl ester, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid, piperazine-1-carbonyl-2-cyclopentanecarboxylic acid, piperazin-1-yl-4-oxo-lower alkanoic acid, piperidin-1-yl-4-oxo-lower alkanoic acid, piperazin-1-yl-2-oxo-ethyl-3-methyl-lower alkanoic acid, piperazin-1-yl-4-oxo-2-cyclohexyl-lower alkanoic acid, 2,4-dioxo-thiazolidin-5-yl-acetyl-piperazin-1-yl or piperazin-1-yl-4-lower alkanoic acid.

36. The compound of claim 35 wherein said compound is (2-(4-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazine-1-carbonyl)-cyclopentanecarboxylic acid or a pharmaceutically acceptable salt thereof.

37. The compound of claim 35 wherein said compound is 4-(4-{4-[(4,5-diehloro-1-ethyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid or a pharmaceutically acceptable salt thereof.

38. The compound of claim 35 wherein said compound is 4-ethoxy-1-ethyl-1H-indole-2-carboxylic acid (4-{4-[2-(2,4-dioxo-thiazolidin-5-yl)-acetyl]-piperazin-1-yl}-phenyl)-amide or a pharmaceutically acceptable salt thereof.

39. The compound of claim 35 wherein said compound is 4-(4-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid or a pharmaceutically acceptable salt thereof.

40. The compound of claim 35 wherein said compound is 4-(4-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenyl}-piperazine-1-carbonyl)-cyclohexanecarboxylic acid or or a pharmaceutically acceptable salt thereof.

41. The compound of claim 34 wherein Q is piperidin-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, piperidine-1-carbonyl-trans-4-cyclohexanecarboxylic acid, piperidin-1-yl-4-oxo-2-phenyl-lower alkanoic acid, piperidine-1-carbonyl-2-cyclopentanecarboxylic acid, piperidin-1-yl-2-oxo-ethyl-cyclopentanecarboxylic acid, or piperidin-1-yl-4-oxo-lower alkanoic acid.

42. The compound of claim 41 wherein said compound is 4-(4-{4-[(7-methoxy-3-methyl-1h-indole-2-carbonyl)-amino]-phenyl}-piperidine-1-carbonyl)-cyclohexanecarboxylic acid or pharmaceutically acceptable salts thereof.

43. The compound of claim 34 wherein Q is N-pyrrolidine-1-carboxylic acid lower alkyl ester, O-pyrrolidine-1-carboxylic acid lower alkanoic ester, O-pyrrolidine-1-carboxylic acid lower alkyl ester, pyrrolidine-3-ylamino-1-carboxylic acid lower alkyl ester, pyrrolidin-3-ylamino-1-carboxylic acid tert-butyl amide, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidin-3-oxy-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, or pyrrolidin-3-oxy-1-yl-4-benzoic acid.

44. The compound of claim 43 wherein said compound is 4-3-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenoxy}-pyrrolidin-1-yl)-2,2-dimethyl-4-oxo-butyric acid or a pharmaceutically acceptable salt thereof.

45. The compound of claim 43 wherein said compound is 4-((S)-3-{4-[(4-ethoxy-1-ethyl-1H-indole-2-carbonyl)-amino]-phenoxy}-pyrrolidin-1-yl)-benzoic acid or a pharmaceutically acceptable salt thereof.

46. The compound of claim 43 wherein said compound is 3-{4-[(7-methoxy-3-methyl-1H-indole-2-carbonyl)-amino]-phenoxyl-pyrrolidine-1-carboxylic acid ethyl ester or a pharmaceutically acceptable salt thereof.

47. The compound of claim 1 wherein said compound has the formula:

or a pharmaceutically acceptable salt thereof.

48. The compound of claim 47 wherein Q is piperazine-1-carboxylic acid lower alkyl ester, piperazin-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid benzyl ester, piperazine-1-carbonyl-4-cyclohexanecarboxylic acid, piperazine-1-carbonyl-2-cyclopentanecarboxylic acid, piperazin-1-yl-4-oxo-lower alkanoic acid, piperidin-1-yl-4-oxo-lower alkanoic acid, piperazin-1-yl-2-oxo-ethyl-3-methyl-lower alkanoic acid, piperazin-1-yl-4-oxo-2-cyclohexyl-lower alkanoic acid, 2,4-dioxo-thiazolidin-5-yl-acetyl-piperazin-1-yl or piperazin-1-yl-4-lower alkanoic acid.

49. The compound of claim 48 wherein said compound is 4-(4-{5-[(4-chloro-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid.

50. The compound of claim 48 wherein said compound is 4-(4-{5-[(5-bromo-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-yl}-piperazin-1-yl)-2,2-dimethyl-4-oxo-butyric acid.

51. The compound of claim 47 wherein Q is N-pyrrolidine-1-carboxylic acid lower alkyl ester, O-pyrrolidine-1-carboxylic acid lower alkanoic ester, O-pyrrolidine-1-carboxylic acid lower alkyl ester, pyrrolidine-3-ylamino-1-carboxylic acid lower alkyl ester, pyrrolidin-3-ylamino-1-carboxylic acid tert-butyl amide, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidine-3-oxy-1-carboxylic acid lower alkyl ester, pyrrolidin-3-oxy-1-yl-2,2-dimethyl-4-oxo-lower alkanoic acid, or pyrrolidin-3-oxy-1-yl-4-benzoic acid.

52. The compound of claim 51 wherein said compound is 3-{5-[(4-chloro-benzo[b]thiophene-2-carbonyl)-amino]-pyridin-2-ylamino}-pyrrolidine-1-carboxylic acid ethyl ester hydrochloride or pharmaceutically acceptable salts thereof.

Assignments (5)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNEE'S ADDRESS PREVISOUSLY RECORDED ON REEL 027216 FRAME 0440.ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT OF ASSIGNORS INTEREST Recorded Jun 12, 2012
From: VIA, LLC
To: MADRIGAL PHARMACEUTICALS, INC.
Reel/Frame 028390/0021 →
COLLATERAL ASSIGNMENT OF PATENTS Recorded Nov 16, 2011
From: MADRIGAL PHARMACEUTICALS, INC.
To: BAY CITY CAPITAL FUND IV, L.P.
Reel/Frame 027241/0166 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 11, 2011
From: VIA PHARMACEUTICALS, INC.
To: VIA, LLC
Reel/Frame 027216/0375 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 11, 2011
From: VIA, LLC
To: MADRIGAL PHARMACEUTICALS, INC.
Reel/Frame 027216/0440 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 19, 2010
From: BOLIN, DAVID ROBERT; HAYDEN, STUART; QIAN, YIMIN; YUN, WEIYA
To: VIA PHARMACEUTICALS, INC.
Reel/Frame 023961/0739 →
Continuity (2)
Provisional Application 61119467 · Dec 3, 2008
Related Publication 20100145047A1 · Jun 10, 2010